Wall clock time and date at job start Sun Mar 29 2020 21:35:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37972 * 120.07436 * 2 1 4 4 C 1.38342 * 120.14805 * 180.02562 * 3 2 1 5 5 C 1.50697 * 119.84510 * 179.97438 * 4 3 2 6 6 N 1.46905 * 109.47066 * 90.00212 * 5 4 3 7 7 C 1.46901 * 110.99870 * 180.02562 * 6 5 4 8 8 C 1.50697 * 109.46943 * 180.02562 * 7 6 5 9 9 H 1.08000 * 120.00162 * 359.97438 * 8 7 6 10 10 C 1.37883 * 120.00023 * 180.02562 * 8 7 6 11 11 N 1.31517 * 119.99532 * 359.97438 * 10 8 7 12 12 Si 1.86794 * 120.00003 * 179.97438 * 10 8 7 13 13 H 1.48504 * 109.46907 * 60.00117 * 12 10 8 14 14 H 1.48504 * 109.47065 * 179.97438 * 12 10 8 15 15 H 1.48494 * 109.47302 * 300.00070 * 12 10 8 16 16 C 1.38382 * 120.30579 * 0.25819 * 4 3 2 17 17 C 1.37930 * 120.15237 * 359.48415 * 16 4 3 18 18 C 1.39611 * 120.07523 * 180.02562 * 2 1 3 19 19 C 1.43191 * 120.15131 * 359.97438 * 18 2 1 20 20 N 3.48498 * 80.49501 * 180.02562 * 2 1 3 21 21 H 1.08998 * 109.47262 * 89.99683 * 1 2 3 22 22 H 1.09005 * 109.47290 * 209.99890 * 1 2 3 23 23 H 1.08996 * 109.47431 * 329.99791 * 1 2 3 24 24 H 1.07999 * 119.92477 * 0.02562 * 3 2 1 25 25 H 1.09001 * 109.47558 * 330.00375 * 5 4 3 26 26 H 1.08998 * 109.47216 * 210.00037 * 5 4 3 27 27 H 1.00901 * 110.99869 * 56.04737 * 6 5 4 28 28 H 1.09004 * 109.47031 * 299.99620 * 7 6 5 29 29 H 1.08995 * 109.47111 * 59.99900 * 7 6 5 30 30 H 0.97001 * 119.99132 * 180.02562 * 11 10 8 31 31 H 1.07999 * 119.92320 * 179.74749 * 16 4 3 32 32 H 1.07994 * 120.08131 * 180.25191 * 17 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1940 0.0000 4 6 3.5818 1.1958 -0.0005 5 6 4.3301 2.5038 -0.0011 6 7 4.5738 2.9291 1.3837 7 6 5.3025 4.2041 1.4223 8 6 5.5341 4.6070 2.8559 9 1 5.1756 3.9790 3.6580 10 6 6.2030 5.7780 3.1434 11 7 6.6391 6.5429 2.1665 12 14 6.4895 6.2778 4.9203 13 1 7.2883 5.2306 5.6063 14 1 7.2262 7.5666 4.9594 15 1 5.1825 6.4331 5.6077 16 6 4.2816 0.0020 -0.0065 17 6 3.6032 -1.1989 -0.0011 18 6 2.2066 -1.2082 -0.0005 19 6 1.4956 -2.4510 -0.0005 20 7 0.9315 -3.4371 -0.0015 21 1 -0.3634 0.0001 -1.0276 22 1 -0.3634 -0.8900 0.5138 23 1 -0.3634 0.8899 0.5138 24 1 1.6584 2.1293 0.0004 25 1 3.7378 3.2611 -0.5148 26 1 5.2828 2.3772 -0.5153 27 1 5.0658 2.2153 1.8999 28 1 6.2620 4.0897 0.9179 29 1 4.7165 4.9728 0.9186 30 1 7.1100 7.3665 2.3689 31 1 5.3616 0.0106 -0.0110 32 1 4.1505 -2.1299 -0.0017 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000389893390.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:41 Heat of formation + Delta-G solvation = 40.022806 kcal Electronic energy + Delta-G solvation = -14464.687159 eV Core-core repulsion = 12003.591907 eV Total energy + Delta-G solvation = -2461.095252 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.79514 -36.74128 -35.39023 -33.14991 -32.45993 -31.19536 -27.38890 -27.27377 -24.83312 -22.38941 -21.63321 -20.98005 -18.67545 -16.61753 -16.00724 -15.26350 -14.65478 -14.51927 -14.47311 -14.18090 -13.46933 -13.37185 -13.20327 -13.06870 -12.83331 -12.58747 -12.26415 -11.83653 -11.59578 -11.46463 -11.11895 -10.98536 -10.72433 -10.67694 -9.99509 -9.28038 -8.87657 -8.70828 -8.51607 -7.40886 -6.07687 -4.09989 0.72869 1.30098 2.57002 2.89461 3.31560 3.35615 3.38737 3.78377 3.83388 4.40177 4.62672 4.70370 4.85272 5.22676 5.28416 5.30411 5.42570 5.46380 5.48396 5.57838 5.75622 5.86853 6.06216 6.12377 6.19970 6.32167 6.64662 6.81100 7.14700 7.33362 7.38863 7.71635 8.05560 8.28389 8.51202 8.98698 9.55208 11.03310 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.045533 B = 0.004316 C = 0.004289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.794345 B = 6486.680459 C = 6526.020874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.037 4.037 3 C -0.102 4.102 4 C -0.029 4.029 5 C 0.087 3.913 6 N -0.683 5.683 7 C 0.194 3.806 8 C -0.516 4.516 9 H 0.062 0.938 10 C 0.057 3.943 11 N -0.898 5.898 12 Si 0.900 3.100 13 H -0.277 1.277 14 H -0.288 1.288 15 H -0.276 1.276 16 C -0.124 4.124 17 C -0.066 4.066 18 C -0.050 4.050 19 C 0.265 3.735 20 N -0.434 5.434 21 H 0.076 0.924 22 H 0.063 0.937 23 H 0.078 0.922 24 H 0.135 0.865 25 H 0.077 0.923 26 H 0.034 0.966 27 H 0.331 0.669 28 H -0.012 1.012 29 H 0.030 0.970 30 H 0.262 0.738 31 H 0.131 0.869 32 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.897 -11.254 -6.072 14.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.039 4.039 3 C -0.120 4.120 4 C -0.030 4.030 5 C -0.042 4.042 6 N -0.313 5.313 7 C 0.067 3.933 8 C -0.555 4.555 9 H 0.081 0.919 10 C -0.145 4.145 11 N -0.537 5.537 12 Si 0.728 3.272 13 H -0.202 1.202 14 H -0.213 1.213 15 H -0.201 1.201 16 C -0.143 4.143 17 C -0.086 4.086 18 C -0.054 4.054 19 C -0.049 4.049 20 N -0.109 5.109 21 H 0.094 0.906 22 H 0.082 0.918 23 H 0.097 0.903 24 H 0.153 0.847 25 H 0.096 0.904 26 H 0.052 0.948 27 H 0.148 0.852 28 H 0.006 0.994 29 H 0.048 0.952 30 H 0.072 0.928 31 H 0.149 0.851 32 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -8.288 -12.287 -6.043 16.005 hybrid contribution 1.408 0.485 0.677 1.636 sum -6.880 -11.802 -5.366 14.677 Atomic orbital electron populations 1.20897 0.90751 1.03378 1.02832 1.19896 0.95990 0.91507 0.96525 1.20915 0.93635 0.97290 1.00200 1.20334 0.93914 0.95493 0.93294 1.20998 0.97603 0.92194 0.93442 1.60760 1.54579 1.07175 1.08829 1.19593 0.90961 0.85251 0.97464 1.21132 1.35737 1.06555 0.92083 0.91938 1.24985 0.95588 0.96355 0.97576 1.69950 1.38610 1.13657 1.31504 0.86529 0.78375 0.77664 0.84649 1.20236 1.21331 1.20110 1.21033 1.00423 0.91319 1.01489 1.21066 0.91698 0.98778 0.97074 1.15859 0.92342 0.86295 1.10902 1.25737 0.93129 0.92795 0.93254 1.81226 1.08842 1.11151 1.09726 0.90557 0.91794 0.90281 0.84666 0.90412 0.94838 0.85232 0.99405 0.95229 0.92793 0.85101 0.85291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.11 9.61 36.01 0.35 -0.76 16 2 C -0.04 -0.40 5.91 -104.21 -0.62 -1.02 16 3 C -0.10 -1.22 9.34 -39.64 -0.37 -1.59 16 4 C -0.03 -0.38 5.40 -104.53 -0.56 -0.94 16 5 C 0.09 1.36 5.81 -4.97 -0.03 1.33 16 6 N -0.68 -13.55 6.48 -116.34 -0.75 -14.30 16 7 C 0.19 4.83 5.44 -4.98 -0.03 4.80 16 8 C -0.52 -14.19 9.32 -34.44 -0.32 -14.51 16 9 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 10 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 11 N -0.90 -26.18 13.29 55.43 0.74 -25.44 16 12 Si 0.90 21.22 29.54 -169.99 -5.02 16.20 16 13 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 14 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 15 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 16 C -0.12 -1.40 9.68 -39.64 -0.38 -1.79 16 17 C -0.07 -0.68 9.76 -39.17 -0.38 -1.06 16 18 C -0.05 -0.56 5.73 -106.93 -0.61 -1.18 16 19 C 0.27 3.24 13.80 -22.48 -0.31 2.93 16 20 N -0.43 -6.04 18.54 41.84 0.78 -5.27 16 21 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 22 H 0.06 0.61 7.09 -51.93 -0.37 0.24 16 23 H 0.08 0.64 8.09 -51.93 -0.42 0.22 16 24 H 0.14 1.53 8.06 -52.49 -0.42 1.11 16 25 H 0.08 1.21 8.08 -51.93 -0.42 0.79 16 26 H 0.03 0.51 8.08 -51.93 -0.42 0.09 16 27 H 0.33 6.32 8.72 -39.29 -0.34 5.97 16 28 H -0.01 -0.31 8.14 -51.93 -0.42 -0.73 16 29 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 31 H 0.13 1.32 8.06 -52.49 -0.42 0.89 16 32 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 LS Contribution 289.18 15.07 4.36 4.36 Total: -1.00 -29.80 289.18 -7.32 -37.13 By element: Atomic # 1 Polarization: 3.69 SS G_CDS: -4.05 Total: -0.36 kcal Atomic # 6 Polarization: -8.94 SS G_CDS: -3.37 Total: -12.31 kcal Atomic # 7 Polarization: -45.77 SS G_CDS: 0.76 Total: -45.02 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -29.80 -7.32 -37.13 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389893390.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.150 kcal (2) G-P(sol) polarization free energy of solvation -29.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.127 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds