Wall clock time and date at job start Sun Mar 29 2020 21:35:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37972 * 120.07436 * 2 1 4 4 C 1.38342 * 120.14805 * 180.02562 * 3 2 1 5 5 C 1.50697 * 119.84510 * 179.97438 * 4 3 2 6 6 N 1.46905 * 109.47066 * 90.00212 * 5 4 3 7 7 C 1.46901 * 110.99870 * 180.02562 * 6 5 4 8 8 C 1.50697 * 109.46943 * 180.02562 * 7 6 5 9 9 H 1.08000 * 120.00162 * 359.97438 * 8 7 6 10 10 C 1.37883 * 120.00023 * 180.02562 * 8 7 6 11 11 N 1.31517 * 119.99532 * 359.97438 * 10 8 7 12 12 Si 1.86794 * 120.00003 * 179.97438 * 10 8 7 13 13 H 1.48504 * 109.46907 * 60.00117 * 12 10 8 14 14 H 1.48504 * 109.47065 * 179.97438 * 12 10 8 15 15 H 1.48494 * 109.47302 * 300.00070 * 12 10 8 16 16 C 1.38382 * 120.30579 * 0.25819 * 4 3 2 17 17 C 1.37930 * 120.15237 * 359.48415 * 16 4 3 18 18 C 1.39611 * 120.07523 * 180.02562 * 2 1 3 19 19 C 1.43191 * 120.15131 * 359.97438 * 18 2 1 20 20 N 3.48498 * 80.49501 * 180.02562 * 2 1 3 21 21 H 1.08998 * 109.47262 * 89.99683 * 1 2 3 22 22 H 1.09005 * 109.47290 * 209.99890 * 1 2 3 23 23 H 1.08996 * 109.47431 * 329.99791 * 1 2 3 24 24 H 1.07999 * 119.92477 * 0.02562 * 3 2 1 25 25 H 1.09001 * 109.47558 * 330.00375 * 5 4 3 26 26 H 1.08998 * 109.47216 * 210.00037 * 5 4 3 27 27 H 1.00901 * 110.99869 * 56.04737 * 6 5 4 28 28 H 1.09004 * 109.47031 * 299.99620 * 7 6 5 29 29 H 1.08995 * 109.47111 * 59.99900 * 7 6 5 30 30 H 0.97001 * 119.99132 * 180.02562 * 11 10 8 31 31 H 1.07999 * 119.92320 * 179.74749 * 16 4 3 32 32 H 1.07994 * 120.08131 * 180.25191 * 17 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1940 0.0000 4 6 3.5818 1.1958 -0.0005 5 6 4.3301 2.5038 -0.0011 6 7 4.5738 2.9291 1.3837 7 6 5.3025 4.2041 1.4223 8 6 5.5341 4.6070 2.8559 9 1 5.1756 3.9790 3.6580 10 6 6.2030 5.7780 3.1434 11 7 6.6391 6.5429 2.1665 12 14 6.4895 6.2778 4.9203 13 1 7.2883 5.2306 5.6063 14 1 7.2262 7.5666 4.9594 15 1 5.1825 6.4331 5.6077 16 6 4.2816 0.0020 -0.0065 17 6 3.6032 -1.1989 -0.0011 18 6 2.2066 -1.2082 -0.0005 19 6 1.4956 -2.4510 -0.0005 20 7 0.9315 -3.4371 -0.0015 21 1 -0.3634 0.0001 -1.0276 22 1 -0.3634 -0.8900 0.5138 23 1 -0.3634 0.8899 0.5138 24 1 1.6584 2.1293 0.0004 25 1 3.7378 3.2611 -0.5148 26 1 5.2828 2.3772 -0.5153 27 1 5.0658 2.2153 1.8999 28 1 6.2620 4.0897 0.9179 29 1 4.7165 4.9728 0.9186 30 1 7.1100 7.3665 2.3689 31 1 5.3616 0.0106 -0.0110 32 1 4.1505 -2.1299 -0.0017 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000389893390.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:41 Heat of formation + Delta-G solvation = 22.156360 kcal Electronic energy + Delta-G solvation = -14465.461906 eV Core-core repulsion = 12003.591907 eV Total energy + Delta-G solvation = -2461.869999 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.72901 -37.85711 -36.84838 -34.77684 -33.64252 -32.46048 -29.08675 -28.08808 -26.37335 -23.63374 -23.20095 -22.07780 -19.59787 -18.58640 -17.10829 -16.73631 -16.27510 -15.63494 -15.41077 -15.40079 -15.00625 -14.60418 -14.11215 -14.07069 -13.91884 -13.89465 -13.38565 -13.26458 -12.98055 -12.80997 -12.59635 -12.53803 -12.20841 -11.95468 -11.82427 -11.28525 -10.62413 -9.80050 -9.64765 -9.07058 -8.19475 -6.30004 -0.21825 0.43122 1.44883 1.47546 1.55520 1.60285 1.92154 2.43249 2.84812 2.88977 3.14408 3.69673 3.78046 3.86743 4.04253 4.36040 4.39281 4.52294 4.70594 4.73999 4.76983 4.85585 5.04748 5.12977 5.23394 5.26635 5.33725 5.44350 5.63572 5.68778 5.89834 6.05295 6.43084 6.46222 6.74237 6.92231 7.40874 8.91603 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.045533 B = 0.004316 C = 0.004289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.794345 B = 6486.680459 C = 6526.020874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.033 4.033 3 C -0.108 4.108 4 C -0.041 4.041 5 C 0.090 3.910 6 N -0.682 5.682 7 C 0.207 3.793 8 C -0.536 4.536 9 H 0.064 0.936 10 C 0.003 3.997 11 N -0.934 5.934 12 Si 0.970 3.030 13 H -0.267 1.267 14 H -0.284 1.284 15 H -0.269 1.269 16 C -0.124 4.124 17 C -0.056 4.056 18 C -0.054 4.054 19 C 0.285 3.715 20 N -0.464 5.464 21 H 0.089 0.911 22 H 0.059 0.941 23 H 0.088 0.912 24 H 0.138 0.862 25 H 0.074 0.926 26 H 0.037 0.963 27 H 0.337 0.663 28 H -0.034 1.034 29 H 0.004 0.996 30 H 0.265 0.735 31 H 0.144 0.856 32 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.181 -12.193 -5.398 15.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.036 4.036 3 C -0.126 4.126 4 C -0.043 4.043 5 C -0.039 4.039 6 N -0.313 5.313 7 C 0.080 3.920 8 C -0.574 4.574 9 H 0.082 0.918 10 C -0.195 4.195 11 N -0.574 5.574 12 Si 0.794 3.206 13 H -0.191 1.191 14 H -0.210 1.210 15 H -0.194 1.194 16 C -0.142 4.142 17 C -0.077 4.077 18 C -0.058 4.058 19 C -0.029 4.029 20 N -0.141 5.141 21 H 0.108 0.892 22 H 0.078 0.922 23 H 0.107 0.893 24 H 0.156 0.844 25 H 0.092 0.908 26 H 0.056 0.944 27 H 0.154 0.846 28 H -0.017 1.017 29 H 0.022 0.978 30 H 0.074 0.926 31 H 0.162 0.838 32 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -8.586 -13.254 -5.374 16.681 hybrid contribution 1.465 0.734 0.400 1.687 sum -7.121 -12.519 -4.974 15.238 Atomic orbital electron populations 1.20945 0.89424 1.03660 1.03793 1.20039 0.96970 0.90978 0.95615 1.20966 0.93349 0.97902 1.00409 1.20117 0.94238 0.94572 0.95333 1.20968 0.98178 0.93753 0.90955 1.60591 1.53274 1.05651 1.11742 1.19232 0.89830 0.87072 0.95897 1.21528 1.35738 1.06894 0.93238 0.91750 1.25903 0.95212 0.96343 1.02089 1.70075 1.39355 1.14131 1.33809 0.85429 0.78505 0.77448 0.79186 1.19146 1.20962 1.19419 1.21154 1.01122 0.90929 1.01004 1.21286 0.91387 0.99413 0.95582 1.15971 0.92777 0.85899 1.11117 1.25758 0.92390 0.92488 0.92307 1.81253 1.09801 1.12120 1.10879 0.89220 0.92170 0.89320 0.84374 0.90782 0.94439 0.84609 1.01672 0.97810 0.92644 0.83844 0.82867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.97 9.61 71.24 0.68 -1.29 16 2 C -0.03 -0.67 5.91 -19.60 -0.12 -0.79 16 3 C -0.11 -2.43 9.34 22.23 0.21 -2.22 16 4 C -0.04 -1.02 5.40 -19.81 -0.11 -1.13 16 5 C 0.09 2.80 5.81 85.55 0.50 3.30 16 6 N -0.68 -27.05 6.48 -521.98 -3.38 -30.43 16 7 C 0.21 10.56 5.44 85.56 0.47 11.03 16 8 C -0.54 -29.58 9.32 25.60 0.24 -29.34 16 9 H 0.06 3.45 7.81 -2.91 -0.02 3.43 16 10 C 0.00 0.16 5.46 84.66 0.46 0.62 16 11 N -0.93 -55.08 13.29 21.45 0.28 -54.79 16 12 Si 0.97 43.22 29.54 68.60 2.03 45.25 16 13 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 14 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 15 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 16 C -0.12 -2.54 9.68 22.23 0.22 -2.32 16 17 C -0.06 -1.02 9.76 22.54 0.22 -0.80 16 18 C -0.05 -1.09 5.73 -21.36 -0.12 -1.21 16 19 C 0.28 6.41 13.80 88.33 1.22 7.62 16 20 N -0.46 -12.28 18.54 19.00 0.35 -11.93 16 21 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 22 H 0.06 1.03 7.09 -2.38 -0.02 1.02 16 23 H 0.09 1.27 8.09 -2.39 -0.02 1.25 16 24 H 0.14 2.98 8.06 -2.91 -0.02 2.96 16 25 H 0.07 2.33 8.08 -2.39 -0.02 2.31 16 26 H 0.04 1.14 8.08 -2.39 -0.02 1.12 16 27 H 0.34 12.68 8.72 -89.69 -0.78 11.90 16 28 H -0.03 -1.87 8.14 -2.39 -0.02 -1.89 16 29 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 30 H 0.26 14.72 8.31 -92.71 -0.77 13.95 16 31 H 0.14 2.56 8.06 -2.91 -0.02 2.54 16 32 H 0.15 2.04 8.06 -2.91 -0.02 2.01 16 Total: -1.00 -63.23 289.18 3.49 -59.74 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: 0.34 Total: 8.69 kcal Atomic # 6 Polarization: -20.39 SS G_CDS: 3.86 Total: -16.53 kcal Atomic # 7 Polarization: -94.40 SS G_CDS: -2.74 Total: -97.15 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Total: -63.23 3.49 -59.74 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389893390.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.899 kcal (2) G-P(sol) polarization free energy of solvation -63.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.743 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds