Wall clock time and date at job start Sun Mar 29 2020 21:35:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.34243 * 125.03171 * 2 1 4 4 C 1.46493 * 107.03081 * 180.02562 * 3 2 1 5 5 C 1.39664 * 133.92713 * 179.97438 * 4 3 2 6 6 C 1.38212 * 119.59161 * 179.74766 * 5 4 3 7 7 N 1.39965 * 119.88839 * 180.27923 * 6 5 4 8 8 C 1.46504 * 119.99868 * 180.26546 * 7 6 5 9 9 C 1.50705 * 109.46910 * 179.97438 * 8 7 6 10 10 H 1.07997 * 120.00354 * 0.02562 * 9 8 7 11 11 C 1.37877 * 119.99522 * 179.97438 * 9 8 7 12 12 N 1.31509 * 120.00533 * 0.02562 * 11 9 8 13 13 Si 1.86808 * 119.99535 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47093 * 60.00372 * 13 11 9 15 15 H 1.48504 * 109.46988 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.47049 * 300.00077 * 13 11 9 17 17 C 1.39419 * 120.22394 * 0.55526 * 6 5 4 18 18 C 1.37662 * 120.60417 * 359.44793 * 17 6 5 19 19 C 1.39106 * 120.01674 * 0.28256 * 18 17 6 20 20 N 1.36795 * 125.02618 * 180.02562 * 2 1 3 21 21 H 0.97001 * 125.07805 * 359.95829 * 20 2 1 22 22 H 1.08991 * 109.46766 * 269.98461 * 1 2 3 23 23 H 1.08997 * 109.46689 * 29.98398 * 1 2 3 24 24 H 1.08993 * 109.46689 * 149.98231 * 1 2 3 25 25 H 1.08005 * 126.48619 * 0.02562 * 3 2 1 26 26 H 1.08003 * 120.20454 * 0.06837 * 5 4 3 27 27 H 0.96997 * 119.99871 * 0.27749 * 7 6 5 28 28 H 1.08993 * 109.47548 * 300.00421 * 8 7 6 29 29 H 1.09003 * 109.46876 * 60.00651 * 8 7 6 30 30 H 0.96997 * 119.99950 * 179.97438 * 12 11 9 31 31 H 1.08002 * 119.70119 * 179.73304 * 17 6 5 32 32 H 1.07997 * 119.99225 * 180.26016 * 18 17 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2777 1.0992 0.0000 4 6 3.6709 0.6465 -0.0006 5 6 4.9032 1.3037 -0.0014 6 6 6.0710 0.5645 0.0035 7 7 7.3094 1.2167 0.0087 8 6 8.5487 0.4355 0.0079 9 6 9.7313 1.3697 0.0136 10 1 9.5754 2.4383 0.0177 11 6 11.0124 0.8599 0.0144 12 7 11.2024 -0.4414 0.0099 13 14 12.4783 2.0178 0.0222 14 1 12.4302 2.8692 1.2379 15 1 13.7346 1.2259 0.0213 16 1 12.4355 2.8786 -1.1872 17 6 6.0197 -0.8288 -0.0026 18 6 4.8098 -1.4855 -0.0021 19 6 3.6236 -0.7589 -0.0014 20 7 2.2922 -1.1202 -0.0005 21 1 1.9621 -2.0323 -0.0003 22 1 -0.3632 -0.0003 1.0276 23 1 -0.3632 0.8901 -0.5136 24 1 -0.3632 -0.8898 -0.5141 25 1 1.9353 2.1236 0.0004 26 1 4.9434 2.3830 -0.0004 27 1 7.3470 2.1860 0.0130 28 1 8.5804 -0.1967 0.8952 29 1 8.5839 -0.1891 -0.8847 30 1 12.1037 -0.7999 0.0101 31 1 6.9374 -1.3981 -0.0032 32 1 4.7816 -2.5651 -0.0026 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591773606.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:22 Heat of formation + Delta-G solvation = 46.508924 kcal Electronic energy + Delta-G solvation = -14756.683916 eV Core-core repulsion = 12295.869923 eV Total energy + Delta-G solvation = -2460.813993 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.74701 -37.37823 -34.19857 -32.46610 -31.47121 -30.49307 -28.56087 -26.50454 -25.58646 -22.66568 -21.69973 -20.04517 -19.93492 -17.27598 -17.00391 -15.77330 -15.02060 -14.63724 -14.51574 -13.94117 -13.50134 -13.14877 -13.05219 -12.65445 -12.58156 -12.57303 -12.15327 -11.80523 -11.66882 -11.13813 -10.85101 -10.75058 -10.32501 -10.09446 -9.35204 -9.27841 -8.86156 -8.35427 -7.35785 -6.19289 -6.16722 -4.21263 1.60298 2.43094 3.03526 3.27148 3.31376 3.33657 3.43432 4.30051 4.56878 4.65429 4.90702 5.11118 5.20404 5.31213 5.39878 5.57632 5.69416 5.77310 5.95366 6.02441 6.23813 6.41000 6.63455 6.80777 7.03682 7.12874 7.24046 7.27944 7.50171 7.57084 7.73166 7.91434 8.01570 8.42545 8.77250 9.00531 9.44998 10.93997 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.077363 B = 0.004537 C = 0.004299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 361.841865 B = 6170.569225 C = 6511.957756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.073 3.927 3 C -0.221 4.221 4 C -0.052 4.052 5 C -0.193 4.193 6 C 0.215 3.785 7 N -0.735 5.735 8 C 0.253 3.747 9 C -0.537 4.537 10 H 0.061 0.939 11 C 0.063 3.937 12 N -0.891 5.891 13 Si 0.903 3.097 14 H -0.275 1.275 15 H -0.285 1.285 16 H -0.275 1.275 17 C -0.160 4.160 18 C -0.088 4.088 19 C 0.028 3.972 20 N -0.599 5.599 21 H 0.406 0.594 22 H 0.072 0.928 23 H 0.080 0.920 24 H 0.063 0.937 25 H 0.137 0.863 26 H 0.113 0.887 27 H 0.390 0.610 28 H 0.018 0.982 29 H 0.018 0.982 30 H 0.266 0.734 31 H 0.130 0.870 32 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.588 -0.887 -0.014 17.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.036 4.036 3 C -0.248 4.248 4 C -0.057 4.057 5 C -0.219 4.219 6 C 0.107 3.893 7 N -0.360 5.360 8 C 0.131 3.869 9 C -0.576 4.576 10 H 0.080 0.920 11 C -0.140 4.140 12 N -0.529 5.529 13 Si 0.730 3.270 14 H -0.201 1.201 15 H -0.211 1.211 16 H -0.201 1.201 17 C -0.183 4.183 18 C -0.109 4.109 19 C -0.077 4.077 20 N -0.204 5.204 21 H 0.241 0.759 22 H 0.091 0.909 23 H 0.099 0.901 24 H 0.082 0.918 25 H 0.155 0.845 26 H 0.131 0.869 27 H 0.223 0.777 28 H 0.036 0.964 29 H 0.036 0.964 30 H 0.075 0.925 31 H 0.148 0.852 32 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -17.235 -1.286 -0.015 17.283 hybrid contribution 0.815 0.428 0.012 0.921 sum -16.420 -0.858 -0.004 16.443 Atomic orbital electron populations 1.20407 0.88505 1.03164 1.02632 1.20144 0.92833 0.86342 1.04254 1.21312 0.90824 0.97164 1.15456 1.18784 0.92679 0.91690 1.02511 1.19696 0.89348 0.98417 1.14401 1.17771 0.86368 0.91564 0.93590 1.45416 1.03041 1.08331 1.79250 1.19050 0.79616 0.91872 0.96345 1.21190 0.90669 0.93201 1.52497 0.92048 1.24927 0.99034 0.95296 0.94749 1.69933 1.22311 1.11121 1.49490 0.86482 0.81242 0.80506 0.78744 1.20073 1.21095 1.20077 1.20553 0.97310 0.92992 1.07405 1.19716 0.89359 0.98164 1.03629 1.17971 0.83959 0.94170 1.11590 1.41537 1.04204 1.07253 1.67363 0.75878 0.90940 0.90105 0.91817 0.84547 0.86929 0.77676 0.96393 0.96396 0.92478 0.85249 0.86954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.71 10.39 36.01 0.37 -0.33 16 2 C 0.07 0.91 7.08 -81.78 -0.58 0.33 16 3 C -0.22 -3.25 10.95 -37.67 -0.41 -3.67 16 4 C -0.05 -0.92 6.37 -105.14 -0.67 -1.59 16 5 C -0.19 -3.62 9.94 -39.06 -0.39 -4.01 16 6 C 0.22 4.41 6.65 -83.71 -0.56 3.86 16 7 N -0.74 -16.29 5.73 -59.77 -0.34 -16.64 16 8 C 0.25 6.55 4.66 -5.19 -0.02 6.53 16 9 C -0.54 -14.80 9.28 -34.44 -0.32 -15.12 16 10 H 0.06 1.63 7.60 -52.49 -0.40 1.23 16 11 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 12 N -0.89 -25.86 13.29 55.43 0.74 -25.12 16 13 Si 0.90 21.11 29.54 -169.99 -5.02 16.09 16 14 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 15 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 16 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 17 C -0.16 -3.14 9.28 -39.35 -0.37 -3.50 16 18 C -0.09 -1.48 10.06 -39.47 -0.40 -1.88 16 19 C 0.03 0.47 7.27 -83.89 -0.61 -0.14 16 20 N -0.60 -7.85 6.08 -6.91 -0.04 -7.89 16 21 H 0.41 3.99 8.96 -40.82 -0.37 3.62 16 22 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 23 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.14 1.72 8.06 -52.48 -0.42 1.30 16 26 H 0.11 1.94 8.06 -52.48 -0.42 1.52 16 27 H 0.39 8.09 8.33 -40.82 -0.34 7.75 16 28 H 0.02 0.50 7.94 -51.93 -0.41 0.09 16 29 H 0.02 0.50 7.94 -51.93 -0.41 0.09 16 30 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 31 H 0.13 2.64 6.70 -52.49 -0.35 2.28 16 32 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 LS Contribution 277.73 15.07 4.19 4.19 Total: -1.00 -30.66 277.73 -8.48 -39.14 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: -3.95 Total: 8.10 kcal Atomic # 6 Polarization: -13.83 SS G_CDS: -4.05 Total: -17.87 kcal Atomic # 7 Polarization: -50.00 SS G_CDS: 0.35 Total: -49.65 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -30.66 -8.48 -39.14 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591773606.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.651 kcal (2) G-P(sol) polarization free energy of solvation -30.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.143 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds