Wall clock time and date at job start Sun Mar 29 2020 21:35:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.34243 * 125.03171 * 2 1 4 4 C 1.46493 * 107.03081 * 180.02562 * 3 2 1 5 5 C 1.39664 * 133.92713 * 179.97438 * 4 3 2 6 6 C 1.38212 * 119.59161 * 179.74766 * 5 4 3 7 7 N 1.39965 * 119.88839 * 180.27923 * 6 5 4 8 8 C 1.46504 * 119.99868 * 180.26546 * 7 6 5 9 9 C 1.50705 * 109.46910 * 179.97438 * 8 7 6 10 10 H 1.07997 * 120.00354 * 0.02562 * 9 8 7 11 11 C 1.37877 * 119.99522 * 179.97438 * 9 8 7 12 12 N 1.31509 * 120.00533 * 0.02562 * 11 9 8 13 13 Si 1.86808 * 119.99535 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47093 * 60.00372 * 13 11 9 15 15 H 1.48504 * 109.46988 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.47049 * 300.00077 * 13 11 9 17 17 C 1.39419 * 120.22394 * 0.55526 * 6 5 4 18 18 C 1.37662 * 120.60417 * 359.44793 * 17 6 5 19 19 C 1.39106 * 120.01674 * 0.28256 * 18 17 6 20 20 N 1.36795 * 125.02618 * 180.02562 * 2 1 3 21 21 H 0.97001 * 125.07805 * 359.95829 * 20 2 1 22 22 H 1.08991 * 109.46766 * 269.98461 * 1 2 3 23 23 H 1.08997 * 109.46689 * 29.98398 * 1 2 3 24 24 H 1.08993 * 109.46689 * 149.98231 * 1 2 3 25 25 H 1.08005 * 126.48619 * 0.02562 * 3 2 1 26 26 H 1.08003 * 120.20454 * 0.06837 * 5 4 3 27 27 H 0.96997 * 119.99871 * 0.27749 * 7 6 5 28 28 H 1.08993 * 109.47548 * 300.00421 * 8 7 6 29 29 H 1.09003 * 109.46876 * 60.00651 * 8 7 6 30 30 H 0.96997 * 119.99950 * 179.97438 * 12 11 9 31 31 H 1.08002 * 119.70119 * 179.73304 * 17 6 5 32 32 H 1.07997 * 119.99225 * 180.26016 * 18 17 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2777 1.0992 0.0000 4 6 3.6709 0.6465 -0.0006 5 6 4.9032 1.3037 -0.0014 6 6 6.0710 0.5645 0.0035 7 7 7.3094 1.2167 0.0087 8 6 8.5487 0.4355 0.0079 9 6 9.7313 1.3697 0.0136 10 1 9.5754 2.4383 0.0177 11 6 11.0124 0.8599 0.0144 12 7 11.2024 -0.4414 0.0099 13 14 12.4783 2.0178 0.0222 14 1 12.4302 2.8692 1.2379 15 1 13.7346 1.2259 0.0213 16 1 12.4355 2.8786 -1.1872 17 6 6.0197 -0.8288 -0.0026 18 6 4.8098 -1.4855 -0.0021 19 6 3.6236 -0.7589 -0.0014 20 7 2.2922 -1.1202 -0.0005 21 1 1.9621 -2.0323 -0.0003 22 1 -0.3632 -0.0003 1.0276 23 1 -0.3632 0.8901 -0.5136 24 1 -0.3632 -0.8898 -0.5141 25 1 1.9353 2.1236 0.0004 26 1 4.9434 2.3830 -0.0004 27 1 7.3470 2.1860 0.0130 28 1 8.5804 -0.1967 0.8952 29 1 8.5839 -0.1891 -0.8847 30 1 12.1037 -0.7999 0.0101 31 1 6.9374 -1.3981 -0.0032 32 1 4.7816 -2.5651 -0.0026 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591773606.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:21 Heat of formation + Delta-G solvation = 27.096498 kcal Electronic energy + Delta-G solvation = -14757.525702 eV Core-core repulsion = 12295.869923 eV Total energy + Delta-G solvation = -2461.655779 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.97719 -38.86574 -35.93996 -34.32563 -32.77696 -31.55256 -30.19651 -28.01922 -27.02711 -24.59445 -23.06800 -21.51728 -21.06698 -18.96963 -18.50809 -17.34759 -16.88552 -16.15858 -15.60293 -15.49661 -14.86153 -14.75670 -14.50485 -14.06866 -13.80456 -13.63950 -13.60900 -13.26284 -12.88189 -12.83866 -12.57514 -12.37604 -12.13903 -11.64795 -11.41809 -10.79877 -10.56593 -10.06772 -8.59400 -8.29319 -7.77002 -6.42968 0.27486 0.97814 1.41036 1.44562 1.52611 1.88049 2.33771 2.36307 2.98093 3.04729 3.12350 3.88813 4.01337 4.29694 4.48304 4.56135 4.59914 4.68205 4.85404 4.88140 5.07972 5.14192 5.20122 5.27688 5.33457 5.46641 5.55605 5.59271 5.81887 5.92730 6.01485 6.30203 6.53123 6.81628 6.89374 7.22011 7.32607 8.82456 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.077363 B = 0.004537 C = 0.004299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 361.841865 B = 6170.569225 C = 6511.957756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.099 3.901 3 C -0.251 4.251 4 C -0.073 4.073 5 C -0.194 4.194 6 C 0.187 3.813 7 N -0.741 5.741 8 C 0.275 3.725 9 C -0.559 4.559 10 H 0.069 0.931 11 C 0.009 3.991 12 N -0.927 5.927 13 Si 0.978 3.022 14 H -0.266 1.266 15 H -0.280 1.280 16 H -0.266 1.266 17 C -0.189 4.189 18 C -0.077 4.077 19 C 0.021 3.979 20 N -0.587 5.587 21 H 0.424 0.576 22 H 0.090 0.910 23 H 0.096 0.904 24 H 0.084 0.916 25 H 0.154 0.846 26 H 0.122 0.878 27 H 0.394 0.606 28 H -0.011 1.011 29 H -0.011 1.011 30 H 0.269 0.731 31 H 0.108 0.892 32 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.010 -0.403 -0.012 20.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.011 4.011 3 C -0.277 4.277 4 C -0.078 4.078 5 C -0.219 4.219 6 C 0.082 3.918 7 N -0.370 5.370 8 C 0.152 3.848 9 C -0.597 4.597 10 H 0.087 0.913 11 C -0.191 4.191 12 N -0.565 5.565 13 Si 0.802 3.198 14 H -0.191 1.191 15 H -0.205 1.205 16 H -0.191 1.191 17 C -0.212 4.212 18 C -0.098 4.098 19 C -0.085 4.085 20 N -0.193 5.193 21 H 0.263 0.737 22 H 0.108 0.892 23 H 0.115 0.885 24 H 0.103 0.897 25 H 0.172 0.828 26 H 0.140 0.860 27 H 0.228 0.772 28 H 0.007 0.993 29 H 0.007 0.993 30 H 0.078 0.922 31 H 0.126 0.874 32 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -19.731 -0.820 -0.013 19.748 hybrid contribution 1.289 0.198 0.012 1.304 sum -18.442 -0.622 -0.001 18.452 Atomic orbital electron populations 1.20596 0.84538 1.05037 1.04318 1.20901 0.94998 0.85139 1.00074 1.21612 0.89412 0.99047 1.17614 1.19228 0.93712 0.92617 1.02257 1.19830 0.89344 0.98915 1.13834 1.17990 0.86169 0.92146 0.95521 1.45068 1.02585 1.08148 1.81155 1.18512 0.81302 0.91426 0.93596 1.21579 0.91546 0.93811 1.52737 0.91257 1.25930 1.02217 0.97023 0.93941 1.70070 1.23199 1.13146 1.50125 0.85305 0.77064 0.78226 0.79222 1.19090 1.20528 1.19099 1.20512 0.97796 0.92883 1.10038 1.19895 0.88584 0.99563 1.01748 1.18069 0.85377 0.93994 1.11077 1.41615 1.02819 1.08741 1.66170 0.73678 0.89150 0.88549 0.89699 0.82799 0.86027 0.77155 0.99296 0.99303 0.92205 0.87379 0.84122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.94 10.39 71.24 0.74 -0.20 16 2 C 0.10 2.10 7.08 40.87 0.29 2.39 16 3 C -0.25 -6.79 10.95 23.51 0.26 -6.53 16 4 C -0.07 -2.52 6.37 -20.20 -0.13 -2.65 16 5 C -0.19 -7.42 9.94 22.61 0.22 -7.20 16 6 C 0.19 8.06 6.65 38.12 0.25 8.32 16 7 N -0.74 -34.81 5.73 -343.02 -1.97 -36.78 16 8 C 0.27 15.19 4.66 85.63 0.40 15.59 16 9 C -0.56 -31.81 9.28 25.60 0.24 -31.58 16 10 H 0.07 3.73 7.60 -2.91 -0.02 3.71 16 11 C 0.01 0.49 5.46 84.66 0.46 0.95 16 12 N -0.93 -55.49 13.29 21.45 0.28 -55.20 16 13 Si 0.98 43.63 29.54 68.60 2.03 45.66 16 14 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 15 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 16 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 17 C -0.19 -7.86 9.28 22.42 0.21 -7.65 16 18 C -0.08 -2.61 10.06 22.34 0.22 -2.38 16 19 C 0.02 0.66 7.27 38.97 0.28 0.95 16 20 N -0.59 -13.49 6.08 -175.78 -1.07 -14.56 16 21 H 0.42 6.68 8.96 -92.71 -0.83 5.85 16 22 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 23 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 24 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 25 H 0.15 3.49 8.06 -2.91 -0.02 3.47 16 26 H 0.12 4.26 8.06 -2.91 -0.02 4.24 16 27 H 0.39 17.18 8.33 -92.71 -0.77 16.41 16 28 H -0.01 -0.64 7.94 -2.39 -0.02 -0.66 16 29 H -0.01 -0.65 7.94 -2.39 -0.02 -0.66 16 30 H 0.27 15.06 8.31 -92.71 -0.77 14.28 16 31 H 0.11 4.84 6.70 -2.91 -0.02 4.82 16 32 H 0.14 3.81 8.06 -2.91 -0.02 3.79 16 Total: -1.00 -68.60 277.73 2.27 -66.34 By element: Atomic # 1 Polarization: 25.01 SS G_CDS: -0.46 Total: 24.55 kcal Atomic # 6 Polarization: -33.45 SS G_CDS: 3.45 Total: -30.00 kcal Atomic # 7 Polarization: -103.79 SS G_CDS: -2.75 Total: -106.55 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Total: -68.60 2.27 -66.34 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591773606.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.432 kcal (2) G-P(sol) polarization free energy of solvation -68.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.335 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds