Wall clock time and date at job start Sun Mar 29 2020 21:28:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39630 * 120.14770 * 260.27870 * 3 2 1 5 5 C 1.37951 * 119.84583 * 179.72112 * 4 3 2 6 6 C 1.38364 * 120.14902 * 0.53319 * 5 4 3 7 7 C 1.50696 * 119.84921 * 179.74007 * 6 5 4 8 8 C 1.52998 * 109.47235 * 270.02443 * 7 6 5 9 9 N 1.46906 * 109.47153 * 179.97438 * 8 7 6 10 10 C 1.46893 * 110.99969 * 180.02562 * 9 8 7 11 11 C 1.50703 * 109.47177 * 180.02562 * 10 9 8 12 12 H 1.07994 * 119.99690 * 359.97438 * 11 10 9 13 13 C 1.37872 * 120.00017 * 179.97438 * 11 10 9 14 14 N 1.31513 * 120.00368 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 120.00138 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.46716 * 90.00039 * 15 13 11 17 17 H 1.48497 * 109.47261 * 210.00401 * 15 13 11 18 18 H 1.48497 * 109.46747 * 330.00656 * 15 13 11 19 19 C 1.38366 * 120.30555 * 359.76678 * 6 5 4 20 20 C 1.37947 * 120.14940 * 359.95280 * 19 6 5 21 21 H 1.07999 * 120.08232 * 359.97438 * 4 3 2 22 22 H 1.08002 * 119.92831 * 180.25347 * 5 4 3 23 23 H 1.09004 * 109.46695 * 30.02569 * 7 6 5 24 24 H 1.08997 * 109.47414 * 150.02246 * 7 6 5 25 25 H 1.08996 * 109.47541 * 299.99980 * 8 7 6 26 26 H 1.09002 * 109.47189 * 60.00332 * 8 7 6 27 27 H 1.00907 * 110.99752 * 303.95206 * 9 8 7 28 28 H 1.09001 * 109.47101 * 299.99554 * 10 9 8 29 29 H 1.09001 * 109.47654 * 59.99486 * 10 9 8 30 30 H 0.97001 * 120.00422 * 179.97438 * 14 13 11 31 31 H 1.07993 * 119.92703 * 179.97438 * 19 6 5 32 32 H 1.08003 * 120.07687 * 180.02562 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2691 0.2048 1.1901 5 6 4.6486 0.1985 1.1839 6 6 5.3374 0.0014 0.0002 7 6 6.8443 0.0016 0.0002 8 6 7.3542 1.4246 -0.2361 9 7 8.8232 1.4249 -0.2355 10 6 9.3495 2.7779 -0.4596 11 6 10.8560 2.7384 -0.4529 12 1 11.3709 1.8019 -0.2973 13 6 11.5768 3.8978 -0.6455 14 7 10.9498 5.0383 -0.8345 15 14 13.4442 3.8490 -0.6366 16 1 13.9396 3.6063 -2.0153 17 1 13.9710 5.1465 -0.1425 18 1 13.9065 2.7552 0.2551 19 6 4.6489 -0.1954 -1.1838 20 6 3.2694 -0.1972 -1.1910 21 1 2.7328 0.3633 2.1140 22 1 5.1923 0.3522 2.1044 23 1 7.2076 -0.3594 0.9625 24 1 7.2078 -0.6511 -0.7934 25 1 6.9909 1.7856 -1.1983 26 1 6.9908 2.0773 0.5576 27 1 9.1845 1.0341 0.6219 28 1 9.0005 3.1484 -1.4234 29 1 8.9995 3.4398 0.3325 30 1 11.4570 5.8540 -0.9696 31 1 5.1926 -0.3482 -2.1042 32 1 2.7332 -0.3513 -2.1158 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594717553.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:28:48 Heat of formation + Delta-G solvation = 39.204105 kcal Electronic energy + Delta-G solvation = -14173.675783 eV Core-core repulsion = 11712.545030 eV Total energy + Delta-G solvation = -2461.130753 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.75826 -36.85509 -35.71589 -33.30685 -32.00892 -31.28929 -28.88469 -26.14740 -23.47436 -22.96764 -21.47279 -21.12526 -19.11059 -16.44543 -15.91911 -15.78030 -14.85574 -14.73463 -14.48909 -14.24734 -13.77484 -13.59575 -13.36044 -13.01589 -12.70157 -12.53426 -12.21253 -11.75318 -11.43990 -11.33164 -11.13117 -10.81727 -10.66921 -10.56404 -9.95190 -9.25911 -9.23244 -8.83003 -8.50625 -7.36638 -6.05836 -4.08218 0.57628 1.14352 2.45257 2.75201 3.30685 3.36540 3.39965 3.66364 3.69052 4.40162 4.61610 4.65872 4.66362 5.15654 5.17592 5.30115 5.37042 5.43233 5.51948 5.70525 5.79659 5.93355 6.05849 6.07792 6.17986 6.39947 6.52519 6.64577 7.20567 7.26557 7.37734 7.74744 8.09053 8.33501 8.56299 9.01008 9.56986 11.05254 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.068050 B = 0.003581 C = 0.003540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 411.362960 B = 7817.434474 C = 7908.818282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.429 5.429 2 C 0.260 3.740 3 C -0.046 4.046 4 C -0.067 4.067 5 C -0.120 4.120 6 C -0.037 4.037 7 C -0.087 4.087 8 C 0.065 3.935 9 N -0.692 5.692 10 C 0.194 3.806 11 C -0.516 4.516 12 H 0.063 0.937 13 C 0.055 3.945 14 N -0.898 5.898 15 Si 0.900 3.100 16 H -0.280 1.280 17 H -0.287 1.287 18 H -0.273 1.273 19 C -0.117 4.117 20 C -0.067 4.067 21 H 0.130 0.870 22 H 0.133 0.867 23 H 0.073 0.927 24 H 0.084 0.916 25 H 0.066 0.934 26 H 0.020 0.980 27 H 0.329 0.671 28 H 0.028 0.972 29 H -0.013 1.013 30 H 0.262 0.738 31 H 0.136 0.864 32 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.184 -10.516 2.533 16.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.104 5.104 2 C -0.055 4.055 3 C -0.050 4.050 4 C -0.088 4.088 5 C -0.138 4.138 6 C -0.038 4.038 7 C -0.125 4.125 8 C -0.065 4.065 9 N -0.322 5.322 10 C 0.067 3.933 11 C -0.554 4.554 12 H 0.081 0.919 13 C -0.146 4.146 14 N -0.537 5.537 15 Si 0.727 3.273 16 H -0.206 1.206 17 H -0.213 1.213 18 H -0.198 1.198 19 C -0.135 4.135 20 C -0.088 4.088 21 H 0.148 0.852 22 H 0.151 0.849 23 H 0.092 0.908 24 H 0.103 0.897 25 H 0.084 0.916 26 H 0.039 0.961 27 H 0.145 0.855 28 H 0.046 0.954 29 H 0.004 0.996 30 H 0.071 0.929 31 H 0.154 0.846 32 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -13.865 -10.485 1.831 17.479 hybrid contribution 1.193 0.636 0.810 1.575 sum -12.672 -9.850 2.640 16.266 Atomic orbital electron populations 1.81241 1.12173 1.09418 1.07572 1.25795 0.92735 0.93376 0.93564 1.15978 0.84093 1.09302 0.95610 1.21143 0.94307 0.96805 0.96535 1.21066 0.93354 1.00757 0.98595 1.20321 0.96729 0.93871 0.92921 1.20776 0.88976 0.99217 1.03516 1.21840 0.90859 0.93351 1.00445 1.60688 1.03863 1.26744 1.40888 1.19554 0.94971 0.82750 0.96014 1.21185 0.91068 0.94115 1.49051 0.91916 1.24998 0.98928 0.95358 0.95322 1.69959 1.35642 0.98748 1.49378 0.86474 0.85169 0.77275 0.78335 1.20587 1.21300 1.19827 1.21090 0.93309 1.00598 0.98533 1.21161 0.94334 0.96791 0.96468 0.85182 0.84876 0.90816 0.89714 0.91552 0.96147 0.85518 0.95405 0.99554 0.92868 0.84615 0.85123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -5.61 18.54 41.83 0.78 -4.83 16 2 C 0.26 2.84 15.33 -22.47 -0.34 2.50 16 3 C -0.05 -0.43 5.73 -106.93 -0.61 -1.05 16 4 C -0.07 -0.58 9.76 -39.17 -0.38 -0.97 16 5 C -0.12 -1.10 9.68 -39.64 -0.38 -1.48 16 6 C -0.04 -0.38 5.14 -104.53 -0.54 -0.91 16 7 C -0.09 -1.02 5.60 -27.89 -0.16 -1.18 16 8 C 0.07 1.04 5.67 -3.82 -0.02 1.02 16 9 N -0.69 -13.97 6.49 -115.06 -0.75 -14.72 16 10 C 0.19 4.96 5.44 -4.98 -0.03 4.93 16 11 C -0.52 -14.35 9.32 -34.44 -0.32 -14.67 16 12 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 13 C 0.06 1.56 5.46 -17.82 -0.10 1.47 16 14 N -0.90 -26.55 13.29 55.43 0.74 -25.82 16 15 Si 0.90 21.34 29.54 -169.99 -5.02 16.32 16 16 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 17 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 18 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 19 C -0.12 -1.09 9.68 -39.64 -0.38 -1.47 16 20 C -0.07 -0.58 9.76 -39.17 -0.38 -0.96 16 21 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 22 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 23 H 0.07 0.80 8.08 -51.93 -0.42 0.38 16 24 H 0.08 0.99 8.08 -51.93 -0.42 0.57 16 25 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 26 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.33 6.24 8.72 -39.29 -0.34 5.89 16 28 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 29 H -0.01 -0.36 8.14 -51.93 -0.42 -0.79 16 30 H 0.26 7.29 8.31 -40.82 -0.34 6.96 16 31 H 0.14 1.11 8.06 -52.49 -0.42 0.68 16 32 H 0.13 0.90 8.06 -52.48 -0.42 0.48 16 LS Contribution 291.53 15.07 4.39 4.39 Total: -1.00 -30.77 291.53 -7.62 -38.39 By element: Atomic # 1 Polarization: 3.17 SS G_CDS: -4.11 Total: -0.94 kcal Atomic # 6 Polarization: -9.14 SS G_CDS: -3.65 Total: -12.79 kcal Atomic # 7 Polarization: -46.13 SS G_CDS: 0.76 Total: -45.37 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -30.77 -7.62 -38.39 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594717553.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.591 kcal (2) G-P(sol) polarization free energy of solvation -30.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.387 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds