Wall clock time and date at job start Sun Mar 29 2020 21:28:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39630 * 120.14770 * 260.27870 * 3 2 1 5 5 C 1.37951 * 119.84583 * 179.72112 * 4 3 2 6 6 C 1.38364 * 120.14902 * 0.53319 * 5 4 3 7 7 C 1.50696 * 119.84921 * 179.74007 * 6 5 4 8 8 C 1.52998 * 109.47235 * 270.02443 * 7 6 5 9 9 N 1.46906 * 109.47153 * 179.97438 * 8 7 6 10 10 C 1.46893 * 110.99969 * 180.02562 * 9 8 7 11 11 C 1.50703 * 109.47177 * 180.02562 * 10 9 8 12 12 H 1.07994 * 119.99690 * 359.97438 * 11 10 9 13 13 C 1.37872 * 120.00017 * 179.97438 * 11 10 9 14 14 N 1.31513 * 120.00368 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 120.00138 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.46716 * 90.00039 * 15 13 11 17 17 H 1.48497 * 109.47261 * 210.00401 * 15 13 11 18 18 H 1.48497 * 109.46747 * 330.00656 * 15 13 11 19 19 C 1.38366 * 120.30555 * 359.76678 * 6 5 4 20 20 C 1.37947 * 120.14940 * 359.95280 * 19 6 5 21 21 H 1.07999 * 120.08232 * 359.97438 * 4 3 2 22 22 H 1.08002 * 119.92831 * 180.25347 * 5 4 3 23 23 H 1.09004 * 109.46695 * 30.02569 * 7 6 5 24 24 H 1.08997 * 109.47414 * 150.02246 * 7 6 5 25 25 H 1.08996 * 109.47541 * 299.99980 * 8 7 6 26 26 H 1.09002 * 109.47189 * 60.00332 * 8 7 6 27 27 H 1.00907 * 110.99752 * 303.95206 * 9 8 7 28 28 H 1.09001 * 109.47101 * 299.99554 * 10 9 8 29 29 H 1.09001 * 109.47654 * 59.99486 * 10 9 8 30 30 H 0.97001 * 120.00422 * 179.97438 * 14 13 11 31 31 H 1.07993 * 119.92703 * 179.97438 * 19 6 5 32 32 H 1.08003 * 120.07687 * 180.02562 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2691 0.2048 1.1901 5 6 4.6486 0.1985 1.1839 6 6 5.3374 0.0014 0.0002 7 6 6.8443 0.0016 0.0002 8 6 7.3542 1.4246 -0.2361 9 7 8.8232 1.4249 -0.2355 10 6 9.3495 2.7779 -0.4596 11 6 10.8560 2.7384 -0.4529 12 1 11.3709 1.8019 -0.2973 13 6 11.5768 3.8978 -0.6455 14 7 10.9498 5.0383 -0.8345 15 14 13.4442 3.8490 -0.6366 16 1 13.9396 3.6063 -2.0153 17 1 13.9710 5.1465 -0.1425 18 1 13.9065 2.7552 0.2551 19 6 4.6489 -0.1954 -1.1838 20 6 3.2694 -0.1972 -1.1910 21 1 2.7328 0.3633 2.1140 22 1 5.1923 0.3522 2.1044 23 1 7.2076 -0.3594 0.9625 24 1 7.2078 -0.6511 -0.7934 25 1 6.9909 1.7856 -1.1983 26 1 6.9908 2.0773 0.5576 27 1 9.1845 1.0341 0.6219 28 1 9.0005 3.1484 -1.4234 29 1 8.9995 3.4398 0.3325 30 1 11.4570 5.8540 -0.9696 31 1 5.1926 -0.3482 -2.1042 32 1 2.7332 -0.3513 -2.1158 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594717553.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:28:48 Heat of formation + Delta-G solvation = 20.514080 kcal Electronic energy + Delta-G solvation = -14174.486244 eV Core-core repulsion = 11712.545030 eV Total energy + Delta-G solvation = -2461.941214 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.51418 -37.87303 -37.13678 -34.95326 -33.50433 -31.98275 -30.22675 -27.83187 -24.79369 -23.66731 -23.25863 -22.23686 -19.86327 -18.52632 -16.94246 -16.77543 -16.42645 -16.07355 -15.47258 -15.18360 -14.97245 -14.76350 -14.39361 -14.12709 -13.89072 -13.80684 -13.65272 -13.23564 -12.84598 -12.66507 -12.37453 -12.24009 -12.16293 -11.86915 -11.69466 -11.26930 -10.63669 -9.91923 -9.66815 -9.08919 -8.20341 -6.31587 -0.19722 0.45890 1.44327 1.45876 1.57044 1.59203 1.92328 2.42509 2.86324 2.91314 3.13301 3.56858 3.91447 4.01778 4.15413 4.28997 4.42860 4.48421 4.59376 4.73034 4.87901 4.99840 5.11059 5.18071 5.25286 5.30697 5.35007 5.37457 5.64425 5.71642 5.92105 6.04893 6.42156 6.47309 6.76923 6.93670 7.39791 8.91223 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.068050 B = 0.003581 C = 0.003540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 411.362960 B = 7817.434474 C = 7908.818282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.470 5.470 2 C 0.282 3.718 3 C -0.053 4.053 4 C -0.064 4.064 5 C -0.122 4.122 6 C -0.048 4.048 7 C -0.072 4.072 8 C 0.066 3.934 9 N -0.690 5.690 10 C 0.207 3.793 11 C -0.535 4.535 12 H 0.067 0.933 13 C 0.000 4.000 14 N -0.936 5.936 15 Si 0.973 3.027 16 H -0.274 1.274 17 H -0.283 1.283 18 H -0.261 1.261 19 C -0.121 4.121 20 C -0.063 4.063 21 H 0.149 0.851 22 H 0.147 0.853 23 H 0.086 0.914 24 H 0.087 0.913 25 H 0.056 0.944 26 H 0.018 0.982 27 H 0.338 0.662 28 H -0.002 1.002 29 H -0.039 1.039 30 H 0.265 0.735 31 H 0.146 0.854 32 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.585 -11.661 2.917 16.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.146 5.146 2 C -0.032 4.032 3 C -0.056 4.056 4 C -0.084 4.084 5 C -0.140 4.140 6 C -0.050 4.050 7 C -0.110 4.110 8 C -0.064 4.064 9 N -0.321 5.321 10 C 0.079 3.921 11 C -0.573 4.573 12 H 0.085 0.915 13 C -0.199 4.199 14 N -0.576 5.576 15 Si 0.797 3.203 16 H -0.199 1.199 17 H -0.209 1.209 18 H -0.185 1.185 19 C -0.139 4.139 20 C -0.084 4.084 21 H 0.166 0.834 22 H 0.164 0.836 23 H 0.105 0.895 24 H 0.106 0.894 25 H 0.074 0.926 26 H 0.036 0.964 27 H 0.155 0.845 28 H 0.017 0.983 29 H -0.022 1.022 30 H 0.073 0.927 31 H 0.164 0.836 32 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -13.281 -11.659 2.223 17.812 hybrid contribution 0.951 0.983 0.687 1.531 sum -12.330 -10.676 2.910 16.567 Atomic orbital electron populations 1.81265 1.13382 1.11034 1.08939 1.25945 0.92795 0.92124 0.92314 1.16084 0.83248 1.09961 0.96341 1.21339 0.94196 0.95835 0.97031 1.21233 0.93624 1.00309 0.98817 1.20256 0.95750 0.95143 0.93817 1.20581 0.90110 0.95975 1.04333 1.21899 0.88124 0.96479 0.99860 1.60541 1.06609 1.23337 1.41570 1.19199 0.94430 0.84963 0.93505 1.21581 0.92298 0.94453 1.49017 0.91470 1.25969 1.04339 0.94880 0.94665 1.70091 1.37771 0.99522 1.50205 0.85328 0.78617 0.77640 0.78685 1.19926 1.20886 1.18513 1.21240 0.93619 1.00362 0.98703 1.21341 0.94176 0.95877 0.96984 0.83368 0.83560 0.89521 0.89418 0.92558 0.96419 0.84510 0.98348 1.02156 0.92655 0.83642 0.83388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -11.98 18.54 19.00 0.35 -11.63 16 2 C 0.28 5.80 15.33 88.33 1.35 7.16 16 3 C -0.05 -0.89 5.73 -21.36 -0.12 -1.01 16 4 C -0.06 -0.96 9.76 22.54 0.22 -0.74 16 5 C -0.12 -1.97 9.68 22.23 0.22 -1.75 16 6 C -0.05 -0.89 5.14 -19.81 -0.10 -0.99 16 7 C -0.07 -1.57 5.60 29.85 0.17 -1.40 16 8 C 0.07 2.07 5.67 86.30 0.49 2.56 16 9 N -0.69 -27.74 6.49 -517.93 -3.36 -31.11 16 10 C 0.21 10.84 5.44 85.56 0.47 11.30 16 11 C -0.54 -29.91 9.32 25.60 0.24 -29.68 16 12 H 0.07 3.61 7.81 -2.91 -0.02 3.59 16 13 C 0.00 -0.03 5.46 84.65 0.46 0.44 16 14 N -0.94 -56.05 13.29 21.45 0.28 -55.77 16 15 Si 0.97 43.42 29.54 68.60 2.03 45.45 16 16 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 17 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 18 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 19 C -0.12 -2.02 9.68 22.23 0.22 -1.80 16 20 C -0.06 -0.97 9.76 22.54 0.22 -0.75 16 21 H 0.15 1.66 8.06 -2.91 -0.02 1.64 16 22 H 0.15 1.95 8.06 -2.91 -0.02 1.92 16 23 H 0.09 1.66 8.08 -2.38 -0.02 1.64 16 24 H 0.09 1.87 8.08 -2.39 -0.02 1.85 16 25 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 26 H 0.02 0.57 8.14 -2.39 -0.02 0.55 16 27 H 0.34 12.55 8.72 -89.69 -0.78 11.76 16 28 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 29 H -0.04 -2.21 8.14 -2.39 -0.02 -2.23 16 30 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16 31 H 0.15 2.10 8.06 -2.91 -0.02 2.07 16 32 H 0.15 1.71 8.06 -2.91 -0.02 1.69 16 Total: -1.00 -66.06 291.53 3.46 -62.60 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: 0.33 Total: 7.13 kcal Atomic # 6 Polarization: -20.50 SS G_CDS: 3.82 Total: -16.68 kcal Atomic # 7 Polarization: -95.78 SS G_CDS: -2.72 Total: -98.50 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Total: -66.06 3.46 -62.60 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594717553.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.116 kcal (2) G-P(sol) polarization free energy of solvation -66.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.602 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds