Wall clock time and date at job start Sun Mar 29 2020 21:46:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36945 * 119.99579 * 2 1 4 4 H 1.07995 * 120.00165 * 322.03200 * 3 2 1 5 5 C 1.38816 * 119.99869 * 142.03784 * 3 2 1 6 6 N 1.31616 * 119.99736 * 157.05348 * 5 3 2 7 7 Si 1.86800 * 119.99914 * 337.05609 * 5 3 2 8 8 H 1.48498 * 109.47361 * 95.68245 * 7 5 3 9 9 H 1.48502 * 109.46706 * 215.68644 * 7 5 3 10 10 H 1.48507 * 109.47152 * 335.68084 * 7 5 3 11 11 C 1.46496 * 120.00151 * 179.97438 * 2 1 3 12 12 C 1.53006 * 109.46857 * 90.00174 * 11 2 1 13 13 C 1.50698 * 109.47022 * 179.97438 * 12 11 2 14 14 C 1.38367 * 119.84904 * 89.99739 * 13 12 11 15 15 C 1.37945 * 120.15100 * 179.97438 * 14 13 12 16 16 C 1.39633 * 119.84754 * 0.02562 * 15 14 13 17 17 C 1.43205 * 120.14733 * 180.02562 * 16 15 14 18 18 N 8.93659 * 119.56932 * 190.69433 * 2 1 3 19 19 C 1.39631 * 119.69785 * 0.27596 * 16 15 14 20 20 C 1.37949 * 119.84804 * 359.46438 * 19 16 15 21 21 H 1.08999 * 109.46744 * 265.66698 * 1 2 3 22 22 H 1.08998 * 109.46805 * 25.66437 * 1 2 3 23 23 H 1.08998 * 109.46758 * 145.66707 * 1 2 3 24 24 H 0.97005 * 119.99839 * 180.02562 * 6 5 3 25 25 H 1.08992 * 109.47594 * 330.00182 * 11 2 1 26 26 H 1.09006 * 109.47149 * 209.99815 * 11 2 1 27 27 H 1.09000 * 109.46964 * 59.99978 * 12 11 2 28 28 H 1.08998 * 109.47196 * 299.99982 * 12 11 2 29 29 H 1.07996 * 119.91734 * 0.02562 * 14 13 12 30 30 H 1.08005 * 120.07305 * 179.97438 * 15 14 13 31 31 H 1.08000 * 120.07504 * 179.69830 * 19 16 15 32 32 H 1.07992 * 119.92431 * 180.22962 * 20 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 1.7811 2.0223 -0.5754 5 6 3.3175 1.3133 0.7395 6 7 4.2040 2.2311 0.4169 7 14 3.6309 0.1818 2.1925 8 1 4.4690 -0.9638 1.7561 9 1 4.3370 0.9330 3.2614 10 1 2.3358 -0.3230 2.7151 11 6 2.1976 -1.2687 0.0006 12 6 2.4526 -1.7109 -1.4418 13 6 3.2067 -3.0157 -1.4413 14 6 2.5122 -4.2124 -1.4406 15 6 3.1962 -5.4104 -1.4406 16 6 4.5925 -5.4134 -1.4408 17 6 5.3090 -6.6533 -1.4414 18 7 5.8750 -7.6377 -1.4424 19 6 5.2869 -4.2020 -1.4351 20 6 4.5903 -3.0113 -1.4406 21 1 -0.3633 -0.0776 1.0247 22 1 -0.3633 0.9263 -0.4451 23 1 -0.3633 -0.8486 -0.5796 24 1 5.0203 2.3197 0.9334 25 1 1.6086 -2.0281 0.5147 26 1 3.1500 -1.1381 0.5143 27 1 3.0416 -0.9514 -1.9559 28 1 1.5002 -1.8415 -1.9556 29 1 1.4322 -4.2085 -1.4408 30 1 2.6528 -6.3438 -1.4396 31 1 6.3668 -4.1973 -1.4304 32 1 5.1261 -2.0737 -1.4399 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595307126.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:48 Heat of formation + Delta-G solvation = 71.483963 kcal Electronic energy + Delta-G solvation = -15042.259984 eV Core-core repulsion = 12582.528990 eV Total energy + Delta-G solvation = -2459.730994 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.51638 -36.75942 -35.98021 -32.90226 -31.55656 -31.05110 -28.70227 -26.22138 -24.40471 -22.71624 -21.74868 -20.67923 -18.88799 -16.75329 -15.76918 -15.58771 -15.05921 -14.50507 -14.11944 -13.96936 -13.54079 -13.35510 -13.20234 -12.87351 -12.63696 -12.59377 -12.19895 -11.70073 -11.58248 -11.25255 -11.09009 -10.90611 -10.60580 -10.43419 -9.84610 -9.58652 -9.00549 -8.70034 -8.52238 -6.87111 -6.06741 -3.47342 0.80017 1.37667 2.60766 2.94574 3.26579 3.43581 3.48764 3.86734 3.89296 4.46646 4.82274 4.86730 4.86919 5.23799 5.38482 5.41114 5.46578 5.72905 5.80527 6.00885 6.04692 6.21142 6.23508 6.29186 6.34220 6.45697 6.53558 6.66987 6.80293 6.85719 6.97152 7.42330 7.98938 8.31717 8.92086 9.64294 10.05233 11.08612 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.031261 B = 0.006787 C = 0.006126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.457023 B = 4124.323914 C = 4569.228530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.123 3.877 2 N -0.611 5.611 3 C -0.273 4.273 4 H 0.079 0.921 5 C 0.039 3.961 6 N -0.896 5.896 7 Si 0.873 3.127 8 H -0.282 1.282 9 H -0.300 1.300 10 H -0.270 1.270 11 C 0.145 3.855 12 C -0.108 4.108 13 C -0.031 4.031 14 C -0.126 4.126 15 C -0.068 4.068 16 C -0.056 4.056 17 C 0.265 3.735 18 N -0.436 5.436 19 C -0.066 4.066 20 C -0.119 4.119 21 H 0.007 0.993 22 H 0.046 0.954 23 H 0.028 0.972 24 H 0.264 0.736 25 H 0.040 0.960 26 H 0.056 0.944 27 H 0.085 0.915 28 H 0.069 0.931 29 H 0.132 0.868 30 H 0.128 0.872 31 H 0.129 0.871 32 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.846 -11.366 -3.642 12.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.022 4.022 2 N -0.334 5.334 3 C -0.402 4.402 4 H 0.097 0.903 5 C -0.162 4.162 6 N -0.537 5.537 7 Si 0.703 3.297 8 H -0.210 1.210 9 H -0.228 1.228 10 H -0.195 1.195 11 C 0.019 3.981 12 C -0.148 4.148 13 C -0.033 4.033 14 C -0.144 4.144 15 C -0.089 4.089 16 C -0.059 4.059 17 C -0.050 4.050 18 N -0.111 5.111 19 C -0.086 4.086 20 C -0.137 4.137 21 H 0.025 0.975 22 H 0.064 0.936 23 H 0.046 0.954 24 H 0.074 0.926 25 H 0.059 0.941 26 H 0.074 0.926 27 H 0.103 0.897 28 H 0.087 0.913 29 H 0.149 0.851 30 H 0.146 0.854 31 H 0.147 0.853 32 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -1.852 -12.762 -3.588 13.385 hybrid contribution 0.145 -0.179 0.895 0.924 sum -1.707 -12.941 -2.692 13.328 Atomic orbital electron populations 1.21099 0.84479 0.99132 0.97479 1.44092 1.00883 1.02027 1.86427 1.18820 1.06137 0.90833 1.24384 0.90319 1.25465 0.96791 0.96388 0.97578 1.69881 1.08437 1.36040 1.39352 0.86989 0.78115 0.80137 0.84465 1.20987 1.22808 1.19489 1.21178 0.96616 0.87662 0.92641 1.21437 0.99448 0.92218 1.01720 1.20518 0.93972 0.96108 0.92727 1.21024 1.00358 0.91213 1.01782 1.21087 0.91791 0.98767 0.97246 1.15944 0.92430 0.86779 1.10774 1.25805 0.93219 0.92879 0.93114 1.81199 1.08828 1.11155 1.09955 1.21158 1.00001 0.90758 0.96711 1.21184 0.94040 0.98201 1.00307 0.97475 0.93568 0.95375 0.92618 0.94138 0.92589 0.89658 0.91276 0.85054 0.85423 0.85290 0.84548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.33 10.70 59.85 0.64 2.97 16 2 N -0.61 -13.85 2.47 -181.12 -0.45 -14.30 16 3 C -0.27 -7.34 9.88 -15.05 -0.15 -7.49 16 4 H 0.08 2.28 8.06 -52.49 -0.42 1.86 16 5 C 0.04 1.07 5.29 -17.43 -0.09 0.98 16 6 N -0.90 -26.27 13.97 55.49 0.78 -25.50 16 7 Si 0.87 21.43 25.10 -169.99 -4.27 17.17 16 8 H -0.28 -6.61 6.68 56.52 0.38 -6.24 16 9 H -0.30 -7.53 7.11 56.52 0.40 -7.13 16 10 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 11 C 0.15 2.89 4.52 -4.04 -0.02 2.88 16 12 C -0.11 -1.79 5.66 -27.88 -0.16 -1.95 16 13 C -0.03 -0.44 5.14 -104.53 -0.54 -0.98 16 14 C -0.13 -1.47 9.68 -39.64 -0.38 -1.86 16 15 C -0.07 -0.74 9.76 -39.17 -0.38 -1.12 16 16 C -0.06 -0.66 5.73 -106.93 -0.61 -1.28 16 17 C 0.26 3.42 15.33 -22.49 -0.34 3.07 16 18 N -0.44 -6.43 18.53 41.82 0.78 -5.66 16 19 C -0.07 -0.80 9.76 -39.17 -0.38 -1.18 16 20 C -0.12 -1.64 9.68 -39.64 -0.38 -2.02 16 21 H 0.01 0.13 8.14 -51.93 -0.42 -0.29 16 22 H 0.05 0.86 8.00 -51.93 -0.42 0.44 16 23 H 0.03 0.44 8.10 -51.93 -0.42 0.02 16 24 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 25 H 0.04 0.73 8.07 -51.93 -0.42 0.31 16 26 H 0.06 1.24 3.37 -51.93 -0.18 1.07 16 27 H 0.08 1.58 8.08 -51.93 -0.42 1.16 16 28 H 0.07 1.04 8.08 -51.93 -0.42 0.62 16 29 H 0.13 1.30 8.06 -52.49 -0.42 0.87 16 30 H 0.13 1.09 8.06 -52.48 -0.42 0.67 16 31 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 32 H 0.14 1.92 8.06 -52.49 -0.42 1.50 16 LS Contribution 282.54 15.07 4.26 4.26 Total: -1.00 -29.77 282.54 -5.67 -35.45 By element: Atomic # 1 Polarization: 0.53 SS G_CDS: -3.97 Total: -3.43 kcal Atomic # 6 Polarization: -5.18 SS G_CDS: -2.80 Total: -7.98 kcal Atomic # 7 Polarization: -46.56 SS G_CDS: 1.10 Total: -45.45 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.27 Total: 17.17 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -29.77 -5.67 -35.45 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595307126.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.930 kcal (2) G-P(sol) polarization free energy of solvation -29.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.446 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds