Wall clock time and date at job start Sun Mar 29 2020 21:46:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36945 * 119.99579 * 2 1 4 4 H 1.07995 * 120.00165 * 322.03200 * 3 2 1 5 5 C 1.38816 * 119.99869 * 142.03784 * 3 2 1 6 6 N 1.31616 * 119.99736 * 157.05348 * 5 3 2 7 7 Si 1.86800 * 119.99914 * 337.05609 * 5 3 2 8 8 H 1.48498 * 109.47361 * 95.68245 * 7 5 3 9 9 H 1.48502 * 109.46706 * 215.68644 * 7 5 3 10 10 H 1.48507 * 109.47152 * 335.68084 * 7 5 3 11 11 C 1.46496 * 120.00151 * 179.97438 * 2 1 3 12 12 C 1.53006 * 109.46857 * 90.00174 * 11 2 1 13 13 C 1.50698 * 109.47022 * 179.97438 * 12 11 2 14 14 C 1.38367 * 119.84904 * 89.99739 * 13 12 11 15 15 C 1.37945 * 120.15100 * 179.97438 * 14 13 12 16 16 C 1.39633 * 119.84754 * 0.02562 * 15 14 13 17 17 C 1.43205 * 120.14733 * 180.02562 * 16 15 14 18 18 N 8.93659 * 119.56932 * 190.69433 * 2 1 3 19 19 C 1.39631 * 119.69785 * 0.27596 * 16 15 14 20 20 C 1.37949 * 119.84804 * 359.46438 * 19 16 15 21 21 H 1.08999 * 109.46744 * 265.66698 * 1 2 3 22 22 H 1.08998 * 109.46805 * 25.66437 * 1 2 3 23 23 H 1.08998 * 109.46758 * 145.66707 * 1 2 3 24 24 H 0.97005 * 119.99839 * 180.02562 * 6 5 3 25 25 H 1.08992 * 109.47594 * 330.00182 * 11 2 1 26 26 H 1.09006 * 109.47149 * 209.99815 * 11 2 1 27 27 H 1.09000 * 109.46964 * 59.99978 * 12 11 2 28 28 H 1.08998 * 109.47196 * 299.99982 * 12 11 2 29 29 H 1.07996 * 119.91734 * 0.02562 * 14 13 12 30 30 H 1.08005 * 120.07305 * 179.97438 * 15 14 13 31 31 H 1.08000 * 120.07504 * 179.69830 * 19 16 15 32 32 H 1.07992 * 119.92431 * 180.22962 * 20 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 1.7811 2.0223 -0.5754 5 6 3.3175 1.3133 0.7395 6 7 4.2040 2.2311 0.4169 7 14 3.6309 0.1818 2.1925 8 1 4.4690 -0.9638 1.7561 9 1 4.3370 0.9330 3.2614 10 1 2.3358 -0.3230 2.7151 11 6 2.1976 -1.2687 0.0006 12 6 2.4526 -1.7109 -1.4418 13 6 3.2067 -3.0157 -1.4413 14 6 2.5122 -4.2124 -1.4406 15 6 3.1962 -5.4104 -1.4406 16 6 4.5925 -5.4134 -1.4408 17 6 5.3090 -6.6533 -1.4414 18 7 5.8750 -7.6377 -1.4424 19 6 5.2869 -4.2020 -1.4351 20 6 4.5903 -3.0113 -1.4406 21 1 -0.3633 -0.0776 1.0247 22 1 -0.3633 0.9263 -0.4451 23 1 -0.3633 -0.8486 -0.5796 24 1 5.0203 2.3197 0.9334 25 1 1.6086 -2.0281 0.5147 26 1 3.1500 -1.1381 0.5143 27 1 3.0416 -0.9514 -1.9559 28 1 1.5002 -1.8415 -1.9556 29 1 1.4322 -4.2085 -1.4408 30 1 2.6528 -6.3438 -1.4396 31 1 6.3668 -4.1973 -1.4304 32 1 5.1261 -2.0737 -1.4399 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595307126.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:47 Heat of formation + Delta-G solvation = 54.930440 kcal Electronic energy + Delta-G solvation = -15042.977799 eV Core-core repulsion = 12582.528990 eV Total energy + Delta-G solvation = -2460.448808 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.52313 -38.09166 -37.38008 -34.31836 -33.40816 -31.98884 -29.98750 -27.99371 -25.83981 -23.65854 -23.16359 -22.25480 -19.85855 -18.69647 -17.36357 -16.68565 -16.40132 -15.68338 -15.46901 -15.13741 -14.98727 -14.79051 -14.45528 -14.31191 -13.96011 -13.78748 -13.52713 -13.33911 -13.00412 -12.67805 -12.48179 -12.33540 -12.04083 -11.98409 -11.68816 -11.33451 -10.60619 -9.92978 -9.71250 -8.70178 -8.18677 -5.55606 -0.19271 0.44817 1.32378 1.43680 1.53621 1.59156 1.92748 2.43440 2.85922 2.90497 3.08586 3.46149 3.91961 4.00732 4.10053 4.29622 4.46389 4.56002 4.62936 4.74111 4.79510 4.87736 5.00398 5.07211 5.18180 5.19496 5.32329 5.36014 5.43432 5.75478 5.92389 5.97244 6.19658 6.41911 7.02781 7.66574 8.08093 9.01118 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.031261 B = 0.006787 C = 0.006126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.457023 B = 4124.323914 C = 4569.228530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.120 3.880 2 N -0.627 5.627 3 C -0.263 4.263 4 H 0.042 0.958 5 C -0.013 4.013 6 N -0.945 5.945 7 Si 0.935 3.065 8 H -0.267 1.267 9 H -0.311 1.311 10 H -0.263 1.263 11 C 0.139 3.861 12 C -0.094 4.094 13 C -0.046 4.046 14 C -0.116 4.116 15 C -0.056 4.056 16 C -0.054 4.054 17 C 0.285 3.715 18 N -0.468 5.468 19 C -0.063 4.063 20 C -0.136 4.136 21 H 0.013 0.987 22 H 0.039 0.961 23 H 0.066 0.934 24 H 0.263 0.737 25 H 0.068 0.932 26 H 0.031 0.969 27 H 0.053 0.947 28 H 0.088 0.912 29 H 0.158 0.842 30 H 0.159 0.841 31 H 0.143 0.857 32 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.167 -14.257 -3.425 15.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.024 4.024 2 N -0.352 5.352 3 C -0.393 4.393 4 H 0.059 0.941 5 C -0.210 4.210 6 N -0.589 5.589 7 Si 0.764 3.236 8 H -0.194 1.194 9 H -0.240 1.240 10 H -0.187 1.187 11 C 0.014 3.986 12 C -0.134 4.134 13 C -0.048 4.048 14 C -0.134 4.134 15 C -0.076 4.076 16 C -0.058 4.058 17 C -0.029 4.029 18 N -0.144 5.144 19 C -0.084 4.084 20 C -0.154 4.154 21 H 0.031 0.969 22 H 0.058 0.942 23 H 0.084 0.916 24 H 0.072 0.928 25 H 0.086 0.914 26 H 0.049 0.951 27 H 0.072 0.928 28 H 0.107 0.893 29 H 0.176 0.824 30 H 0.176 0.824 31 H 0.161 0.839 32 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -3.199 -15.699 -3.382 16.374 hybrid contribution 0.494 0.693 0.730 1.121 sum -2.704 -15.005 -2.653 15.476 Atomic orbital electron populations 1.21223 0.82169 1.00550 0.98420 1.44259 1.02464 1.01530 1.86914 1.18717 1.05994 0.91727 1.22867 0.94055 1.26010 0.96869 0.98242 0.99869 1.69999 1.09297 1.38810 1.40804 0.85984 0.78247 0.78660 0.80749 1.19373 1.23975 1.18715 1.21245 0.95559 0.86987 0.94759 1.21132 1.00241 0.92760 0.99221 1.20371 0.93915 0.95874 0.94624 1.21238 1.01624 0.90188 1.00364 1.21401 0.91222 0.99772 0.95209 1.16024 0.93068 0.86020 1.10690 1.25823 0.92438 0.92544 0.92108 1.81233 1.09785 1.12270 1.11131 1.21245 1.00816 0.90256 0.96075 1.21151 0.94356 0.98320 1.01553 0.96898 0.94217 0.91586 0.92811 0.91368 0.95078 0.92845 0.89335 0.82406 0.82373 0.83919 0.86059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 4.27 10.70 127.77 1.37 5.64 16 2 N -0.63 -27.73 2.47 -726.93 -1.79 -29.52 16 3 C -0.26 -14.42 9.88 84.03 0.83 -13.59 16 4 H 0.04 2.52 8.06 -2.91 -0.02 2.50 16 5 C -0.01 -0.73 5.29 84.86 0.45 -0.28 16 6 N -0.95 -57.43 13.97 21.65 0.30 -57.13 16 7 Si 0.93 44.67 25.10 68.60 1.72 46.39 16 8 H -0.27 -11.95 6.68 99.48 0.66 -11.29 16 9 H -0.31 -15.24 7.11 99.48 0.71 -14.54 16 10 H -0.26 -12.09 7.11 99.48 0.71 -11.39 16 11 C 0.14 5.26 4.52 86.38 0.39 5.65 16 12 C -0.09 -2.95 5.66 29.85 0.17 -2.78 16 13 C -0.05 -1.19 5.14 -19.80 -0.10 -1.29 16 14 C -0.12 -2.22 9.68 22.23 0.22 -2.00 16 15 C -0.06 -0.96 9.76 22.54 0.22 -0.74 16 16 C -0.05 -1.12 5.73 -21.36 -0.12 -1.24 16 17 C 0.29 6.58 15.33 88.34 1.35 7.94 16 18 N -0.47 -12.84 18.53 19.00 0.35 -12.49 16 19 C -0.06 -1.40 9.76 22.54 0.22 -1.18 16 20 C -0.14 -3.57 9.68 22.23 0.22 -3.35 16 21 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 22 H 0.04 1.43 8.00 -2.39 -0.02 1.41 16 23 H 0.07 1.83 8.10 -2.39 -0.02 1.81 16 24 H 0.26 15.16 8.31 -92.70 -0.77 14.39 16 25 H 0.07 2.19 8.07 -2.39 -0.02 2.17 16 26 H 0.03 1.33 3.37 -2.38 -0.01 1.33 16 27 H 0.05 2.00 8.08 -2.39 -0.02 1.98 16 28 H 0.09 2.39 8.08 -2.39 -0.02 2.37 16 29 H 0.16 2.20 8.06 -2.91 -0.02 2.18 16 30 H 0.16 1.81 8.06 -2.91 -0.02 1.79 16 31 H 0.14 2.67 8.06 -2.91 -0.02 2.65 16 32 H 0.12 3.49 8.06 -2.91 -0.02 3.47 16 Total: -1.00 -65.57 282.54 6.85 -58.71 By element: Atomic # 1 Polarization: 0.20 SS G_CDS: 1.07 Total: 1.26 kcal Atomic # 6 Polarization: -12.44 SS G_CDS: 5.21 Total: -7.23 kcal Atomic # 7 Polarization: -98.00 SS G_CDS: -1.14 Total: -99.14 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 1.72 Total: 46.39 kcal Total: -65.57 6.85 -58.71 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595307126.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.645 kcal (2) G-P(sol) polarization free energy of solvation -65.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.715 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds