Wall clock time and date at job start Sun Mar 29 2020 21:37:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34534 * 126.81337 * 2 1 4 4 N 1.36413 * 108.85680 * 179.97438 * 3 2 1 5 5 C 1.46496 * 124.86879 * 180.02562 * 4 3 2 6 6 C 1.53003 * 109.47280 * 84.79045 * 5 4 3 7 7 C 1.50700 * 115.54980 * 278.88637 * 6 5 4 8 8 H 1.08003 * 120.00145 * 144.64768 * 7 6 5 9 9 C 1.37878 * 119.99821 * 324.64240 * 7 6 5 10 10 N 1.31513 * 120.00177 * 337.20499 * 9 7 6 11 11 Si 1.86798 * 119.99857 * 157.20472 * 9 7 6 12 12 H 1.48507 * 109.47188 * 90.00001 * 11 9 7 13 13 H 1.48503 * 109.47366 * 209.99991 * 11 9 7 14 14 H 1.48501 * 109.47105 * 330.00082 * 11 9 7 15 15 C 1.53001 * 117.49970 * 133.17187 * 6 5 4 16 16 C 1.53002 * 60.00095 * 252.51446 * 15 6 5 17 17 C 1.34871 * 110.26255 * 0.26572 * 4 3 2 18 18 C 1.36726 * 108.37872 * 359.56506 * 17 4 3 19 19 C 1.43198 * 126.93781 * 180.19071 * 18 17 4 20 20 N 3.64297 * 92.52331 * 179.97438 * 2 1 3 21 21 H 1.09005 * 109.47433 * 90.00248 * 1 2 3 22 22 H 1.09004 * 109.47136 * 209.99570 * 1 2 3 23 23 H 1.09004 * 109.47536 * 329.99744 * 1 2 3 24 24 H 1.07995 * 125.57071 * 359.96358 * 3 2 1 25 25 H 1.09000 * 109.47660 * 204.79143 * 5 4 3 26 26 H 1.09005 * 109.47221 * 324.79556 * 5 4 3 27 27 H 0.97000 * 120.00181 * 184.97933 * 10 9 7 28 28 H 1.08999 * 117.49721 * 0.02562 * 15 6 5 29 29 H 1.08997 * 117.49801 * 145.02217 * 15 6 5 30 30 H 1.08998 * 117.49360 * 252.51340 * 16 15 6 31 31 H 1.09002 * 117.49624 * 107.48777 * 16 15 6 32 32 H 1.08001 * 125.81162 * 179.73227 * 17 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3131 1.0771 0.0000 4 7 3.6108 0.6565 0.0006 5 6 4.7780 1.5417 0.0013 6 6 5.1046 1.9540 1.4381 7 6 4.2734 3.0805 1.9958 8 1 3.9959 3.0814 3.0396 9 6 3.8672 4.1102 1.1737 10 7 4.5316 4.3707 0.0690 11 14 2.3733 5.1350 1.6288 12 1 2.8004 6.2936 2.4537 13 1 1.7132 5.6245 0.3919 14 1 1.4184 4.3016 2.4027 15 6 6.5656 1.8657 1.8837 16 6 5.5439 0.8537 2.4062 17 6 3.6650 -0.6911 -0.0049 18 6 2.3859 -1.1741 0.0007 19 6 1.9852 -2.5488 0.0015 20 7 1.6673 -3.6394 0.0016 21 1 -0.3634 0.0000 -1.0277 22 1 -0.3634 -0.8901 0.5138 23 1 -0.3634 0.8900 0.5139 24 1 1.9863 2.1064 -0.0006 25 1 5.6315 1.0180 -0.4293 26 1 4.5605 2.4305 -0.5911 27 1 4.2907 5.1389 -0.4721 28 1 7.2942 1.5142 1.1532 29 1 6.9259 2.6226 2.5804 30 1 5.2321 0.9450 3.4467 31 1 5.6003 -0.1638 2.0195 32 1 4.5656 -1.2873 -0.0099 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596266922.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:57 Heat of formation + Delta-G solvation = 93.417129 kcal Electronic energy + Delta-G solvation = -15577.962446 eV Core-core repulsion = 13119.182545 eV Total energy + Delta-G solvation = -2458.779900 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.69368 -36.86274 -35.84087 -32.49013 -32.45444 -29.84378 -27.32172 -25.98006 -24.80660 -21.49782 -21.26182 -19.48105 -19.26910 -17.15383 -16.49973 -15.07593 -14.85042 -14.54579 -13.80860 -13.52477 -13.34464 -13.10692 -12.67132 -12.51602 -12.31769 -12.23141 -11.95164 -11.68802 -11.40629 -11.10707 -10.85181 -10.77655 -10.60911 -10.43206 -9.75043 -9.43429 -8.98909 -8.32217 -7.79931 -7.67202 -6.38494 -4.30350 2.21529 3.02755 3.10250 3.17929 3.21945 3.28218 3.59260 4.12796 4.17289 4.68638 4.81292 5.25385 5.33393 5.51502 5.69197 5.81161 5.89354 5.98829 6.05377 6.15878 6.32529 6.37907 6.38510 6.51050 6.67879 6.69876 6.84570 7.09343 7.14407 7.24440 7.65224 7.77047 7.92806 8.10817 8.15800 8.61690 9.24438 10.65734 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.024353 B = 0.009646 C = 0.007615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.489445 B = 2902.046620 C = 3676.274113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.151 4.151 3 C 0.033 3.967 4 N -0.401 5.401 5 C 0.118 3.882 6 C 0.035 3.965 7 C -0.489 4.489 8 H 0.065 0.935 9 C 0.074 3.926 10 N -0.874 5.874 11 Si 0.879 3.121 12 H -0.279 1.279 13 H -0.280 1.280 14 H -0.266 1.266 15 C -0.193 4.193 16 C -0.202 4.202 17 C 0.066 3.934 18 C -0.158 4.158 19 C 0.309 3.691 20 N -0.476 5.476 21 H 0.058 0.942 22 H 0.055 0.945 23 H 0.063 0.937 24 H 0.163 0.837 25 H 0.062 0.938 26 H 0.139 0.861 27 H 0.268 0.732 28 H 0.066 0.934 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.068 0.932 32 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.556 -2.590 -1.738 3.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.158 4.158 3 C -0.097 4.097 4 N -0.069 5.069 5 C -0.002 4.002 6 C 0.034 3.966 7 C -0.525 4.525 8 H 0.083 0.917 9 C -0.130 4.130 10 N -0.511 5.511 11 Si 0.705 3.295 12 H -0.204 1.204 13 H -0.206 1.206 14 H -0.191 1.191 15 C -0.232 4.232 16 C -0.239 4.239 17 C -0.075 4.075 18 C -0.170 4.170 19 C -0.004 4.004 20 N -0.154 5.154 21 H 0.077 0.923 22 H 0.074 0.926 23 H 0.082 0.918 24 H 0.181 0.819 25 H 0.081 0.919 26 H 0.156 0.844 27 H 0.078 0.922 28 H 0.085 0.915 29 H 0.100 0.900 30 H 0.096 0.904 31 H 0.087 0.913 32 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -1.800 -3.886 -1.946 4.704 hybrid contribution -0.347 1.061 0.393 1.183 sum -2.147 -2.825 -1.553 3.874 Atomic orbital electron populations 1.20058 0.90242 1.01791 1.01156 1.20265 0.94588 0.90162 1.10745 1.21503 0.82097 0.98884 1.07239 1.43977 1.07665 1.05018 1.50273 1.22103 0.83897 0.94051 1.00155 1.19200 0.92877 0.94848 0.89719 1.20452 1.31237 1.04987 0.95864 0.91729 1.24930 0.96396 0.96732 0.94899 1.69828 1.38076 1.27186 1.15965 0.86777 0.83743 0.80422 0.78552 1.20445 1.20579 1.19075 1.23025 0.94355 1.01852 1.03928 1.22855 1.07267 0.93909 0.99909 1.21575 0.97024 0.84340 1.04582 1.16036 0.93188 0.84971 1.22792 1.24885 0.92477 0.91608 0.91414 1.81163 1.08897 1.11920 1.13406 0.92300 0.92584 0.91831 0.81933 0.91944 0.84355 0.92215 0.91518 0.89972 0.90372 0.91300 0.81911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.07 10.32 36.00 0.37 -0.69 16 2 C -0.15 -2.55 6.36 -102.53 -0.65 -3.21 16 3 C 0.03 0.60 11.28 -16.82 -0.19 0.41 16 4 N -0.40 -7.29 2.64 -117.08 -0.31 -7.60 16 5 C 0.12 2.30 5.69 -4.04 -0.02 2.28 16 6 C 0.03 0.74 1.95 -155.66 -0.30 0.44 16 7 C -0.49 -11.79 8.97 -34.44 -0.31 -12.10 16 8 H 0.06 1.62 7.91 -52.48 -0.42 1.20 16 9 C 0.07 1.75 5.01 -17.82 -0.09 1.66 16 10 N -0.87 -21.14 11.17 55.43 0.62 -20.52 16 11 Si 0.88 18.62 29.60 -169.99 -5.03 13.59 16 12 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 13 H -0.28 -5.87 7.11 56.52 0.40 -5.46 16 14 H -0.27 -5.66 7.11 56.52 0.40 -5.25 16 15 C -0.19 -3.87 9.88 -26.73 -0.26 -4.14 16 16 C -0.20 -3.94 9.90 -26.73 -0.26 -4.20 16 17 C 0.07 1.09 11.06 -16.76 -0.19 0.90 16 18 C -0.16 -2.69 6.13 -105.12 -0.64 -3.33 16 19 C 0.31 5.38 15.78 -22.47 -0.35 5.02 16 20 N -0.48 -8.83 18.54 41.84 0.78 -8.05 16 21 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 22 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 23 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 24 H 0.16 3.03 8.06 -52.49 -0.42 2.60 16 25 H 0.06 1.09 7.90 -51.93 -0.41 0.68 16 26 H 0.14 3.01 5.42 -51.93 -0.28 2.72 16 27 H 0.27 6.22 8.32 -40.82 -0.34 5.88 16 28 H 0.07 1.22 8.08 -51.93 -0.42 0.80 16 29 H 0.08 1.71 8.14 -51.93 -0.42 1.28 16 30 H 0.08 1.56 8.14 -51.93 -0.42 1.13 16 31 H 0.07 1.22 7.92 -51.93 -0.41 0.81 16 32 H 0.16 2.23 8.06 -52.49 -0.42 1.81 16 LS Contribution 287.97 15.07 4.34 4.34 Total: -1.00 -24.97 287.97 -6.55 -31.51 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -4.03 Total: 3.69 kcal Atomic # 6 Polarization: -14.05 SS G_CDS: -2.91 Total: -16.96 kcal Atomic # 7 Polarization: -37.26 SS G_CDS: 1.09 Total: -36.17 kcal Atomic # 14 Polarization: 18.62 SS G_CDS: -5.03 Total: 13.59 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -24.97 -6.55 -31.51 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596266922.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.928 kcal (2) G-P(sol) polarization free energy of solvation -24.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.511 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds