Wall clock time and date at job start Sun Mar 29 2020 21:37:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34534 * 126.81337 * 2 1 4 4 N 1.36413 * 108.85680 * 179.97438 * 3 2 1 5 5 C 1.46496 * 124.86879 * 180.02562 * 4 3 2 6 6 C 1.53003 * 109.47280 * 84.79045 * 5 4 3 7 7 C 1.50700 * 115.54980 * 278.88637 * 6 5 4 8 8 H 1.08003 * 120.00145 * 144.64768 * 7 6 5 9 9 C 1.37878 * 119.99821 * 324.64240 * 7 6 5 10 10 N 1.31513 * 120.00177 * 337.20499 * 9 7 6 11 11 Si 1.86798 * 119.99857 * 157.20472 * 9 7 6 12 12 H 1.48507 * 109.47188 * 90.00001 * 11 9 7 13 13 H 1.48503 * 109.47366 * 209.99991 * 11 9 7 14 14 H 1.48501 * 109.47105 * 330.00082 * 11 9 7 15 15 C 1.53001 * 117.49970 * 133.17187 * 6 5 4 16 16 C 1.53002 * 60.00095 * 252.51446 * 15 6 5 17 17 C 1.34871 * 110.26255 * 0.26572 * 4 3 2 18 18 C 1.36726 * 108.37872 * 359.56506 * 17 4 3 19 19 C 1.43198 * 126.93781 * 180.19071 * 18 17 4 20 20 N 3.64297 * 92.52331 * 179.97438 * 2 1 3 21 21 H 1.09005 * 109.47433 * 90.00248 * 1 2 3 22 22 H 1.09004 * 109.47136 * 209.99570 * 1 2 3 23 23 H 1.09004 * 109.47536 * 329.99744 * 1 2 3 24 24 H 1.07995 * 125.57071 * 359.96358 * 3 2 1 25 25 H 1.09000 * 109.47660 * 204.79143 * 5 4 3 26 26 H 1.09005 * 109.47221 * 324.79556 * 5 4 3 27 27 H 0.97000 * 120.00181 * 184.97933 * 10 9 7 28 28 H 1.08999 * 117.49721 * 0.02562 * 15 6 5 29 29 H 1.08997 * 117.49801 * 145.02217 * 15 6 5 30 30 H 1.08998 * 117.49360 * 252.51340 * 16 15 6 31 31 H 1.09002 * 117.49624 * 107.48777 * 16 15 6 32 32 H 1.08001 * 125.81162 * 179.73227 * 17 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3131 1.0771 0.0000 4 7 3.6108 0.6565 0.0006 5 6 4.7780 1.5417 0.0013 6 6 5.1046 1.9540 1.4381 7 6 4.2734 3.0805 1.9958 8 1 3.9959 3.0814 3.0396 9 6 3.8672 4.1102 1.1737 10 7 4.5316 4.3707 0.0690 11 14 2.3733 5.1350 1.6288 12 1 2.8004 6.2936 2.4537 13 1 1.7132 5.6245 0.3919 14 1 1.4184 4.3016 2.4027 15 6 6.5656 1.8657 1.8837 16 6 5.5439 0.8537 2.4062 17 6 3.6650 -0.6911 -0.0049 18 6 2.3859 -1.1741 0.0007 19 6 1.9852 -2.5488 0.0015 20 7 1.6673 -3.6394 0.0016 21 1 -0.3634 0.0000 -1.0277 22 1 -0.3634 -0.8901 0.5138 23 1 -0.3634 0.8900 0.5139 24 1 1.9863 2.1064 -0.0006 25 1 5.6315 1.0180 -0.4293 26 1 4.5605 2.4305 -0.5911 27 1 4.2907 5.1389 -0.4721 28 1 7.2942 1.5142 1.1532 29 1 6.9259 2.6226 2.5804 30 1 5.2321 0.9450 3.4467 31 1 5.6003 -0.1638 2.0195 32 1 4.5656 -1.2873 -0.0099 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596266922.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:57 Heat of formation + Delta-G solvation = 83.985564 kcal Electronic energy + Delta-G solvation = -15578.371429 eV Core-core repulsion = 13119.182545 eV Total energy + Delta-G solvation = -2459.188884 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.06078 -38.43419 -37.25750 -34.27720 -33.80766 -31.16433 -28.70131 -27.71051 -26.23738 -22.98586 -22.72111 -21.07885 -20.63485 -18.61904 -18.12036 -16.63384 -16.47668 -16.03692 -15.34190 -14.94311 -14.71285 -14.52079 -14.08885 -13.82283 -13.64442 -13.63298 -13.43815 -13.17360 -12.91835 -12.81338 -12.44812 -12.24128 -12.09181 -12.05575 -11.37482 -11.12613 -10.64051 -10.04579 -9.18141 -9.00969 -8.19139 -6.14868 0.88802 1.38776 1.48306 1.56704 1.65815 1.80752 2.19815 2.41599 2.77938 2.93325 3.43672 3.66467 4.06812 4.16342 4.24840 4.37983 4.52725 4.60069 4.68291 4.81102 4.96020 4.96971 5.07076 5.12031 5.19602 5.25576 5.35658 5.52295 5.57401 5.86238 5.93667 6.32154 6.43793 6.56339 6.74708 6.77383 7.41324 8.83924 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.024353 B = 0.009646 C = 0.007615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.489445 B = 2902.046620 C = 3676.274113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.145 4.145 3 C 0.007 3.993 4 N -0.407 5.407 5 C 0.128 3.872 6 C 0.010 3.990 7 C -0.509 4.509 8 H 0.044 0.956 9 C 0.049 3.951 10 N -0.889 5.889 11 Si 0.922 3.078 12 H -0.284 1.284 13 H -0.274 1.274 14 H -0.269 1.269 15 C -0.191 4.191 16 C -0.187 4.187 17 C 0.078 3.922 18 C -0.170 4.170 19 C 0.324 3.676 20 N -0.497 5.497 21 H 0.074 0.926 22 H 0.058 0.942 23 H 0.070 0.930 24 H 0.152 0.848 25 H 0.086 0.914 26 H 0.116 0.884 27 H 0.269 0.731 28 H 0.088 0.912 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.092 0.908 32 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.542 -3.493 -2.123 4.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.152 4.152 3 C -0.122 4.122 4 N -0.076 5.076 5 C 0.007 3.993 6 C 0.009 3.991 7 C -0.546 4.546 8 H 0.062 0.938 9 C -0.153 4.153 10 N -0.526 5.526 11 Si 0.748 3.252 12 H -0.210 1.210 13 H -0.199 1.199 14 H -0.193 1.193 15 C -0.229 4.229 16 C -0.224 4.224 17 C -0.063 4.063 18 C -0.181 4.181 19 C 0.012 3.988 20 N -0.176 5.176 21 H 0.093 0.907 22 H 0.077 0.923 23 H 0.089 0.911 24 H 0.169 0.831 25 H 0.104 0.896 26 H 0.134 0.866 27 H 0.078 0.922 28 H 0.107 0.893 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.111 0.889 32 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -1.798 -4.790 -2.329 5.621 hybrid contribution -0.342 1.345 0.541 1.490 sum -2.140 -3.445 -1.788 4.432 Atomic orbital electron populations 1.20140 0.88540 1.02303 1.02335 1.20593 0.95834 0.89711 1.09036 1.21495 0.82670 0.98875 1.09162 1.43922 1.07218 1.05544 1.50925 1.21838 0.84978 0.93920 0.98524 1.19279 0.93408 0.95148 0.91236 1.20579 1.32402 1.06398 0.95177 0.93770 1.25300 0.97626 0.97413 0.94957 1.69890 1.38722 1.27534 1.16435 0.86111 0.81722 0.79061 0.78281 1.21045 1.19923 1.19333 1.23012 0.94168 1.01741 1.03985 1.22841 1.05935 0.94620 0.99021 1.22049 0.98010 0.83646 1.02590 1.16077 0.93604 0.84707 1.23720 1.24809 0.91878 0.91383 0.90738 1.81185 1.09547 1.12511 1.14319 0.90749 0.92296 0.91075 0.83071 0.89603 0.86649 0.92171 0.89346 0.91457 0.91374 0.88923 0.78882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.02 10.32 71.23 0.74 -1.28 16 2 C -0.14 -4.67 6.36 -18.51 -0.12 -4.79 16 3 C 0.01 0.25 11.28 83.13 0.94 1.19 16 4 N -0.41 -14.11 2.64 -524.32 -1.39 -15.49 16 5 C 0.13 4.80 5.69 86.38 0.49 5.29 16 6 C 0.01 0.43 1.95 -52.93 -0.10 0.33 16 7 C -0.51 -24.66 8.97 25.60 0.23 -24.43 16 8 H 0.04 2.26 7.91 -2.91 -0.02 2.23 16 9 C 0.05 2.34 5.01 84.66 0.42 2.76 16 10 N -0.89 -42.95 11.17 21.45 0.24 -42.71 16 11 Si 0.92 38.33 29.60 68.60 2.03 40.36 16 12 H -0.28 -12.00 7.11 99.48 0.71 -11.30 16 13 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 14 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 15 C -0.19 -7.35 9.88 30.60 0.30 -7.05 16 16 C -0.19 -6.93 9.90 30.60 0.30 -6.62 16 17 C 0.08 2.35 11.06 83.87 0.93 3.28 16 18 C -0.17 -5.38 6.13 -20.19 -0.12 -5.50 16 19 C 0.32 10.58 15.78 88.33 1.39 11.97 16 20 N -0.50 -17.52 18.54 19.00 0.35 -17.17 16 21 H 0.07 1.75 8.14 -2.38 -0.02 1.73 16 22 H 0.06 1.53 8.14 -2.38 -0.02 1.51 16 23 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 24 H 0.15 5.66 8.06 -2.91 -0.02 5.64 16 25 H 0.09 2.77 7.90 -2.39 -0.02 2.75 16 26 H 0.12 4.95 5.42 -2.38 -0.01 4.94 16 27 H 0.27 12.45 8.32 -92.71 -0.77 11.68 16 28 H 0.09 2.99 8.08 -2.39 -0.02 2.98 16 29 H 0.07 2.76 8.14 -2.39 -0.02 2.74 16 30 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 31 H 0.09 2.97 7.92 -2.39 -0.02 2.95 16 32 H 0.19 4.49 8.06 -2.91 -0.02 4.47 16 Total: -1.00 -51.72 287.97 7.75 -43.97 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: 1.11 Total: 15.90 kcal Atomic # 6 Polarization: -30.26 SS G_CDS: 5.40 Total: -24.85 kcal Atomic # 7 Polarization: -74.59 SS G_CDS: -0.79 Total: -75.38 kcal Atomic # 14 Polarization: 38.33 SS G_CDS: 2.03 Total: 40.36 kcal Total: -51.72 7.75 -43.97 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596266922.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.952 kcal (2) G-P(sol) polarization free energy of solvation -51.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.967 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds