Wall clock time and date at job start Sun Mar 29 2020 21:30:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86805 * 120.00282 * 2 1 4 4 H 1.48499 * 109.47058 * 270.00156 * 3 2 1 5 5 H 1.48499 * 109.46781 * 30.00381 * 3 2 1 6 6 H 1.48504 * 109.46850 * 150.00010 * 3 2 1 7 7 C 1.37874 * 119.99873 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00405 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99929 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47023 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47057 * 179.97438 * 10 9 7 12 12 N 1.46497 * 109.47185 * 180.02562 * 11 10 9 13 13 C 1.34776 * 119.99924 * 180.02562 * 12 11 10 14 14 O 1.21583 * 120.00267 * 359.97438 * 13 12 11 15 15 N 1.34780 * 120.00249 * 179.97438 * 13 12 11 16 16 C 1.47067 * 136.05152 * 359.62914 * 15 13 12 17 17 C 1.53497 * 87.98534 * 153.13820 * 16 15 13 18 18 F 1.39894 * 114.38920 * 139.67034 * 17 16 15 19 19 C 1.47066 * 136.06263 * 179.97438 * 15 13 12 20 20 H 0.97007 * 119.99584 * 359.97438 * 1 2 3 21 21 H 1.08999 * 109.47331 * 60.00158 * 9 7 2 22 22 H 1.09009 * 109.47233 * 299.99691 * 9 7 2 23 23 H 1.08998 * 109.47428 * 60.00211 * 10 9 7 24 24 H 1.09000 * 109.47350 * 299.99811 * 10 9 7 25 25 H 1.09005 * 109.47247 * 59.99744 * 11 10 9 26 26 H 1.09000 * 109.47089 * 300.00219 * 11 10 9 27 27 H 0.96995 * 119.99876 * 359.97438 * 12 11 10 28 28 H 1.09007 * 113.46858 * 267.91303 * 16 15 13 29 29 H 1.08993 * 113.47208 * 38.35639 * 16 15 13 30 30 H 1.09006 * 114.20377 * 272.47966 * 17 16 15 31 31 H 1.09005 * 113.46156 * 321.64401 * 19 15 13 32 32 H 1.08994 * 113.46837 * 92.02042 * 19 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4991 -0.0017 10 6 2.2452 -3.6621 -0.0015 11 6 1.4801 -4.9871 -0.0020 12 7 2.4321 -6.1006 -0.0011 13 6 1.9827 -7.3713 -0.0019 14 8 0.7874 -7.5934 -0.0029 15 7 2.8585 -8.3958 -0.0017 16 6 4.3223 -8.5375 -0.0072 17 6 4.1397 -9.8918 0.6919 18 9 4.9953 -10.8989 0.2328 19 6 2.7709 -9.8639 -0.0018 20 1 -0.4850 0.8401 0.0004 21 1 0.6246 -2.5563 -0.8920 22 1 0.6239 -2.5575 0.8881 23 1 2.8711 -3.6048 0.8890 24 1 2.8725 -3.6040 -0.8909 25 1 0.8538 -5.0447 -0.8923 26 1 0.8530 -5.0449 0.8877 27 1 3.3857 -5.9234 -0.0007 28 1 4.7467 -8.6194 -1.0080 29 1 4.8325 -7.7966 0.6082 30 1 4.0908 -9.8305 1.7791 31 1 1.9621 -10.2504 0.6183 32 1 2.7806 -10.2992 -1.0010 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000612369180.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:30:23 Heat of formation + Delta-G solvation = -52.504173 kcal Electronic energy + Delta-G solvation = -15379.739024 eV Core-core repulsion = 12483.862277 eV Total energy + Delta-G solvation = -2895.876748 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.117 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -48.06506 -40.37018 -38.02444 -35.36729 -33.32656 -31.38418 -29.29679 -26.74296 -26.21930 -23.28595 -22.09333 -20.66724 -19.62349 -18.07690 -17.36268 -16.63146 -16.20247 -15.71053 -15.20821 -15.09683 -14.48911 -14.27599 -13.88944 -13.46462 -13.29497 -12.76210 -12.30296 -11.99238 -11.82668 -11.70422 -10.91867 -10.88058 -10.74864 -10.60902 -10.22435 -9.88949 -9.47735 -9.15907 -9.14139 -8.65357 -8.38534 -6.03103 -4.06380 2.27355 3.18407 3.29918 3.36312 3.38953 3.52765 3.83690 4.05710 4.43256 4.44523 4.71669 4.93777 5.00027 5.14623 5.30713 5.32714 5.65415 5.72090 5.77153 6.14225 6.46077 6.58273 6.79308 6.97772 7.10543 7.61978 7.74437 7.95456 7.98433 8.36197 8.61471 9.00215 9.57886 11.08183 Molecular weight = 230.12amu Principal moments of inertia in cm(-1) A = 0.061417 B = 0.003850 C = 0.003650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 455.786966 B = 7271.315344 C = 7668.363512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.523 4.523 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.120 4.120 11 C 0.134 3.866 12 N -0.736 5.736 13 C 0.736 3.264 14 O -0.583 6.583 15 N -0.668 5.668 16 C 0.077 3.923 17 C 0.054 3.946 18 F -0.195 7.195 19 C 0.104 3.896 20 H 0.261 0.739 21 H 0.020 0.980 22 H 0.020 0.980 23 H 0.054 0.946 24 H 0.054 0.946 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.394 0.606 28 H 0.094 0.906 29 H 0.089 0.911 30 H 0.127 0.873 31 H 0.090 0.910 32 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.083 -18.305 0.967 20.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.561 4.561 8 H 0.074 0.926 9 C -0.014 4.014 10 C -0.158 4.158 11 C 0.011 3.989 12 N -0.389 5.389 13 C 0.439 3.561 14 O -0.460 6.460 15 N -0.409 5.409 16 C -0.047 4.047 17 C 0.017 3.983 18 F -0.176 7.176 19 C -0.021 4.021 20 H 0.071 0.929 21 H 0.038 0.962 22 H 0.038 0.962 23 H 0.073 0.927 24 H 0.073 0.927 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.227 0.773 28 H 0.112 0.888 29 H 0.108 0.892 30 H 0.145 0.855 31 H 0.109 0.891 32 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 8.844 -18.127 0.958 20.192 hybrid contribution 0.980 1.020 -0.141 1.421 sum 9.824 -17.107 0.817 19.744 Atomic orbital electron populations 1.69969 1.06066 1.26710 1.50498 1.25031 0.94862 0.99316 0.95255 0.86575 0.79789 0.83406 0.78101 1.20652 1.21193 1.19893 1.21196 0.92985 0.90927 1.51022 0.92647 1.19034 0.93840 0.90761 0.97746 1.21899 0.99826 0.93211 1.00878 1.21583 0.91246 0.83963 1.02070 1.45343 1.10657 1.03969 1.78955 1.15208 0.83622 0.79628 0.77637 1.90945 1.13293 1.83462 1.58331 1.48250 1.06737 1.06138 1.79804 1.23569 0.82980 0.96354 1.01782 1.23400 0.89285 0.85563 1.00085 1.92838 1.71868 1.62196 1.90683 1.23366 0.97035 0.80073 1.01604 0.92902 0.96200 0.96190 0.92722 0.92727 0.91779 0.91764 0.77255 0.88764 0.89245 0.85498 0.89149 0.88994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.77 13.29 55.43 0.74 -26.04 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.52 -14.55 9.11 -34.44 -0.31 -14.87 16 8 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 9 C 0.02 0.60 4.97 -27.88 -0.14 0.47 16 10 C -0.12 -2.34 5.27 -26.73 -0.14 -2.48 16 11 C 0.13 2.40 5.67 -4.04 -0.02 2.38 16 12 N -0.74 -10.98 5.56 -65.23 -0.36 -11.35 16 13 C 0.74 11.75 8.79 -86.92 -0.76 10.98 16 14 O -0.58 -11.86 17.12 5.29 0.09 -11.77 16 15 N -0.67 -7.67 3.69 -191.07 -0.71 -8.37 16 16 C 0.08 0.57 8.19 -8.51 -0.07 0.50 16 17 C 0.05 0.36 6.03 -26.23 -0.16 0.20 16 18 F -0.20 -1.58 17.45 2.25 0.04 -1.54 16 19 C 0.10 0.90 8.52 -8.52 -0.07 0.83 16 20 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 21 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 22 H 0.02 0.53 8.14 -51.92 -0.42 0.11 16 23 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 24 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 25 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 26 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 27 H 0.39 4.77 8.19 -40.82 -0.33 4.43 16 28 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.13 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 283.78 15.07 4.28 4.28 Total: -1.00 -33.50 283.78 -7.25 -40.75 By element: Atomic # 1 Polarization: 2.65 SS G_CDS: -4.53 Total: -1.87 kcal Atomic # 6 Polarization: 1.31 SS G_CDS: -1.78 Total: -0.47 kcal Atomic # 7 Polarization: -45.43 SS G_CDS: -0.33 Total: -45.76 kcal Atomic # 8 Polarization: -11.86 SS G_CDS: 0.09 Total: -11.77 kcal Atomic # 9 Polarization: -1.58 SS G_CDS: 0.04 Total: -1.54 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -33.50 -7.25 -40.75 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612369180.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.751 kcal (2) G-P(sol) polarization free energy of solvation -33.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds