Wall clock time and date at job start Sun Mar 29 2020 21:30:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86805 * 120.00282 * 2 1 4 4 H 1.48499 * 109.47058 * 270.00156 * 3 2 1 5 5 H 1.48499 * 109.46781 * 30.00381 * 3 2 1 6 6 H 1.48504 * 109.46850 * 150.00010 * 3 2 1 7 7 C 1.37874 * 119.99873 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00405 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99929 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47023 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47057 * 179.97438 * 10 9 7 12 12 N 1.46497 * 109.47185 * 180.02562 * 11 10 9 13 13 C 1.34776 * 119.99924 * 180.02562 * 12 11 10 14 14 O 1.21583 * 120.00267 * 359.97438 * 13 12 11 15 15 N 1.34780 * 120.00249 * 179.97438 * 13 12 11 16 16 C 1.47067 * 136.05152 * 359.62914 * 15 13 12 17 17 C 1.53497 * 87.98534 * 153.13820 * 16 15 13 18 18 F 1.39894 * 114.38920 * 139.67034 * 17 16 15 19 19 C 1.47066 * 136.06263 * 179.97438 * 15 13 12 20 20 H 0.97007 * 119.99584 * 359.97438 * 1 2 3 21 21 H 1.08999 * 109.47331 * 60.00158 * 9 7 2 22 22 H 1.09009 * 109.47233 * 299.99691 * 9 7 2 23 23 H 1.08998 * 109.47428 * 60.00211 * 10 9 7 24 24 H 1.09000 * 109.47350 * 299.99811 * 10 9 7 25 25 H 1.09005 * 109.47247 * 59.99744 * 11 10 9 26 26 H 1.09000 * 109.47089 * 300.00219 * 11 10 9 27 27 H 0.96995 * 119.99876 * 359.97438 * 12 11 10 28 28 H 1.09007 * 113.46858 * 267.91303 * 16 15 13 29 29 H 1.08993 * 113.47208 * 38.35639 * 16 15 13 30 30 H 1.09006 * 114.20377 * 272.47966 * 17 16 15 31 31 H 1.09005 * 113.46156 * 321.64401 * 19 15 13 32 32 H 1.08994 * 113.46837 * 92.02042 * 19 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4991 -0.0017 10 6 2.2452 -3.6621 -0.0015 11 6 1.4801 -4.9871 -0.0020 12 7 2.4321 -6.1006 -0.0011 13 6 1.9827 -7.3713 -0.0019 14 8 0.7874 -7.5934 -0.0029 15 7 2.8585 -8.3958 -0.0017 16 6 4.3223 -8.5375 -0.0072 17 6 4.1397 -9.8918 0.6919 18 9 4.9953 -10.8989 0.2328 19 6 2.7709 -9.8639 -0.0018 20 1 -0.4850 0.8401 0.0004 21 1 0.6246 -2.5563 -0.8920 22 1 0.6239 -2.5575 0.8881 23 1 2.8711 -3.6048 0.8890 24 1 2.8725 -3.6040 -0.8909 25 1 0.8538 -5.0447 -0.8923 26 1 0.8530 -5.0449 0.8877 27 1 3.3857 -5.9234 -0.0007 28 1 4.7467 -8.6194 -1.0080 29 1 4.8325 -7.7966 0.6082 30 1 4.0908 -9.8305 1.7791 31 1 1.9621 -10.2504 0.6183 32 1 2.7806 -10.2992 -1.0010 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000612369180.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:30:22 Heat of formation + Delta-G solvation = -75.855316 kcal Electronic energy + Delta-G solvation = -15380.751606 eV Core-core repulsion = 12483.862277 eV Total energy + Delta-G solvation = -2896.889329 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.117 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -48.66839 -41.39060 -39.06099 -36.93164 -35.20062 -33.13235 -30.44988 -28.20585 -27.14828 -24.95088 -23.07196 -22.31755 -20.73851 -19.08244 -18.50935 -18.01259 -17.50288 -16.79520 -16.50449 -16.19018 -15.97155 -15.59581 -15.16439 -14.30907 -14.26941 -14.16351 -13.73308 -13.52511 -13.39057 -12.75787 -12.59429 -12.54383 -12.37245 -11.69817 -11.68474 -11.48484 -11.34706 -11.16874 -10.55058 -10.36757 -9.70224 -8.19112 -6.30723 1.27328 1.42655 1.43897 1.54910 1.98860 2.42200 2.79570 2.98245 3.14833 3.38979 3.92356 4.08933 4.13079 4.21022 4.29101 4.45858 4.47602 4.54003 4.63541 4.93797 4.96329 5.12131 5.16216 5.41442 5.52558 5.70624 5.84347 6.07358 6.22519 6.85427 6.89056 7.38919 7.43441 8.93077 Molecular weight = 230.12amu Principal moments of inertia in cm(-1) A = 0.061417 B = 0.003850 C = 0.003650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 455.786966 B = 7271.315344 C = 7668.363512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.004 4.004 3 Si 0.968 3.032 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.259 1.259 7 C -0.541 4.541 8 H 0.067 0.933 9 C 0.023 3.977 10 C -0.099 4.099 11 C 0.149 3.851 12 N -0.725 5.725 13 C 0.732 3.268 14 O -0.637 6.637 15 N -0.672 5.672 16 C 0.077 3.923 17 C 0.073 3.927 18 F -0.199 7.199 19 C 0.093 3.907 20 H 0.263 0.737 21 H -0.008 1.008 22 H -0.007 1.007 23 H 0.069 0.931 24 H 0.068 0.932 25 H 0.047 0.953 26 H 0.049 0.951 27 H 0.411 0.589 28 H 0.108 0.892 29 H 0.111 0.889 30 H 0.148 0.852 31 H 0.087 0.913 32 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.820 -18.603 1.175 22.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.201 4.201 3 Si 0.792 3.208 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.183 1.183 7 C -0.579 4.579 8 H 0.086 0.914 9 C -0.015 4.015 10 C -0.137 4.137 11 C 0.025 3.975 12 N -0.380 5.380 13 C 0.434 3.566 14 O -0.518 6.518 15 N -0.411 5.411 16 C -0.045 4.045 17 C 0.036 3.964 18 F -0.180 7.180 19 C -0.031 4.031 20 H 0.072 0.928 21 H 0.011 0.989 22 H 0.012 0.988 23 H 0.088 0.912 24 H 0.087 0.913 25 H 0.066 0.934 26 H 0.068 0.932 27 H 0.247 0.753 28 H 0.126 0.874 29 H 0.129 0.871 30 H 0.166 0.834 31 H 0.106 0.894 32 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 11.670 -18.472 1.165 21.881 hybrid contribution 0.137 1.014 -0.222 1.047 sum 11.807 -17.458 0.944 21.097 Atomic orbital electron populations 1.70117 1.07978 1.27801 1.51688 1.26033 0.95743 1.03592 0.94775 0.85403 0.78700 0.78226 0.78435 1.19861 1.21096 1.18328 1.21680 0.93782 0.91956 1.50470 0.91444 1.18950 0.94456 0.92909 0.95165 1.21588 0.98452 0.91499 1.02203 1.21142 0.91295 0.84453 1.00652 1.44966 1.10953 1.03148 1.78887 1.15318 0.83458 0.80342 0.77445 1.90904 1.15905 1.84377 1.60640 1.48197 1.08486 1.06346 1.78117 1.23848 0.80275 0.97215 1.03180 1.23293 0.87449 0.84848 1.00782 1.92839 1.71840 1.62434 1.90894 1.23652 0.98493 0.78379 1.02560 0.92815 0.98935 0.98838 0.91201 0.91340 0.93439 0.93249 0.75264 0.87450 0.87105 0.83441 0.89432 0.88148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.12 13.29 21.45 0.28 -56.84 16 2 C 0.00 -0.22 5.46 84.65 0.46 0.24 16 3 Si 0.97 43.52 29.54 68.60 2.03 45.54 16 4 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 5 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 6 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 7 C -0.54 -30.00 9.11 25.60 0.23 -29.77 16 8 H 0.07 3.50 7.74 -2.91 -0.02 3.47 16 9 C 0.02 1.19 4.97 29.85 0.15 1.34 16 10 C -0.10 -3.80 5.27 30.60 0.16 -3.64 16 11 C 0.15 5.36 5.67 86.38 0.49 5.85 16 12 N -0.72 -20.78 5.56 -478.54 -2.66 -23.44 16 13 C 0.73 22.90 8.79 179.05 1.57 24.47 16 14 O -0.64 -26.41 17.12 -3.98 -0.07 -26.48 16 15 N -0.67 -14.22 3.69 -876.69 -3.23 -17.46 16 16 C 0.08 0.89 8.19 83.18 0.68 1.57 16 17 C 0.07 0.76 6.03 30.92 0.19 0.95 16 18 F -0.20 -2.64 17.45 44.97 0.78 -1.85 16 19 C 0.09 1.45 8.52 83.17 0.71 2.16 16 20 H 0.26 15.10 8.31 -92.70 -0.77 14.33 16 21 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 22 H -0.01 -0.38 8.14 -2.38 -0.02 -0.40 16 23 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 24 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 25 H 0.05 1.86 8.14 -2.38 -0.02 1.84 16 26 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 27 H 0.41 8.89 8.19 -92.71 -0.76 8.13 16 28 H 0.11 1.02 8.14 -2.38 -0.02 1.00 16 29 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.15 1.01 8.14 -2.38 -0.02 0.99 16 31 H 0.09 1.43 8.14 -2.38 -0.02 1.41 16 32 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -73.58 283.78 2.13 -71.44 By element: Atomic # 1 Polarization: 5.56 SS G_CDS: 0.35 Total: 5.92 kcal Atomic # 6 Polarization: -1.48 SS G_CDS: 4.65 Total: 3.17 kcal Atomic # 7 Polarization: -92.13 SS G_CDS: -5.61 Total: -97.74 kcal Atomic # 8 Polarization: -26.41 SS G_CDS: -0.07 Total: -26.48 kcal Atomic # 9 Polarization: -2.64 SS G_CDS: 0.78 Total: -1.85 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.54 kcal Total: -73.58 2.13 -71.44 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612369180.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.413 kcal (2) G-P(sol) polarization free energy of solvation -73.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds