Wall clock time and date at job start Sun Mar 29 2020 21:42:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47208 * 179.97438 * 2 1 4 4 N 1.46507 * 109.46510 * 204.77245 * 3 2 1 5 5 C 1.36942 * 119.99650 * 263.91205 * 4 3 2 6 6 H 1.07999 * 119.99688 * 199.40238 * 5 4 3 7 7 C 1.38810 * 120.00240 * 19.40013 * 5 4 3 8 8 N 1.31622 * 119.99796 * 22.28640 * 7 5 4 9 9 Si 1.86799 * 120.00023 * 202.28463 * 7 5 4 10 10 H 1.48500 * 109.47184 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.46928 * 120.00354 * 9 7 5 12 12 H 1.48506 * 109.47059 * 239.99865 * 9 7 5 13 13 C 1.46499 * 120.00158 * 83.91631 * 4 3 2 14 14 C 1.52994 * 109.47049 * 89.99776 * 13 4 3 15 15 C 1.50703 * 109.47270 * 179.97438 * 14 13 4 16 16 C 1.38652 * 120.78952 * 89.99532 * 15 14 13 17 17 C 1.38203 * 119.16187 * 180.02562 * 16 15 14 18 18 N 1.31865 * 120.76543 * 0.26162 * 17 16 15 19 19 C 1.31873 * 121.72269 * 359.47138 * 18 17 16 20 20 C 1.38202 * 120.76426 * 0.52478 * 19 18 17 21 21 H 4.40638 * 5.51566 * 179.97438 * 4 1 2 22 22 H 1.08995 * 109.47222 * 84.77686 * 3 2 1 23 23 H 1.08995 * 109.47001 * 324.76971 * 3 2 1 24 24 H 0.97003 * 120.00193 * 180.02562 * 8 7 5 25 25 H 1.08997 * 109.46947 * 329.99535 * 13 4 3 26 26 H 1.08998 * 109.46623 * 209.99583 * 13 4 3 27 27 H 1.08997 * 109.47443 * 60.00063 * 14 13 4 28 28 H 1.09006 * 109.46998 * 299.99581 * 14 13 4 29 29 H 1.08002 * 120.41705 * 0.04556 * 16 15 14 30 30 H 1.07999 * 119.61392 * 179.97438 * 17 16 15 31 31 H 1.08001 * 119.61584 * 180.27672 * 19 18 17 32 32 H 1.08000 * 120.41674 * 179.76454 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.2551 0.5788 5 6 3.4799 2.2974 -0.2391 6 1 4.1181 3.0858 0.1318 7 6 3.0108 2.3407 -1.5448 8 7 1.9264 1.6726 -1.8769 9 14 3.9183 3.3471 -2.8305 10 1 5.0975 3.9994 -2.2067 11 1 4.3686 2.4557 -3.9294 12 1 3.0096 4.3867 -3.3772 13 6 3.2509 1.3943 2.0324 14 6 4.6443 0.9453 2.4770 15 6 4.7652 1.0891 3.9723 16 6 4.4191 0.0447 4.8160 17 6 4.5427 0.2134 6.1821 18 7 4.9786 1.3520 6.6845 19 6 5.3215 2.3645 5.9122 20 6 5.2245 2.2691 4.5369 21 1 -1.0502 -0.0002 -0.0003 22 1 3.0094 -0.0927 -1.0233 23 1 3.0097 -0.8386 0.5928 24 1 1.5987 1.7025 -2.7894 25 1 2.4972 0.7750 2.5187 26 1 3.0992 2.4372 2.3109 27 1 5.3980 1.5646 1.9907 28 1 4.7960 -0.0976 2.1985 29 1 4.0578 -0.8889 4.4107 30 1 4.2748 -0.5952 6.8461 31 1 5.6785 3.2802 6.3599 32 1 5.5033 3.1031 3.9100 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000799200714.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:06 Heat of formation + Delta-G solvation = 109.162987 kcal Electronic energy + Delta-G solvation = -15069.737944 eV Core-core repulsion = 12611.640835 eV Total energy + Delta-G solvation = -2458.097109 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.95819 -36.45664 -33.94197 -31.58446 -31.16882 -31.03685 -28.40757 -26.06887 -24.37841 -23.27774 -21.83570 -20.47505 -17.51177 -16.41772 -16.33654 -16.09923 -15.45333 -15.02050 -13.91881 -13.89649 -13.59054 -13.48181 -13.18668 -12.50988 -12.21154 -11.79577 -11.53121 -11.34216 -11.10502 -10.83465 -10.37265 -10.14517 -10.01822 -9.39585 -9.34365 -9.01438 -8.95587 -8.74400 -8.47509 -7.01839 -5.83022 -3.26202 1.28306 1.45172 3.33456 3.42314 3.43890 3.96412 4.14278 4.36040 4.50116 4.57183 4.94378 4.96746 5.29943 5.31147 5.32512 5.64306 5.68295 5.78604 5.81593 5.94464 6.08449 6.22460 6.30462 6.38983 6.63720 6.78721 6.81576 6.92424 7.15917 7.38949 7.71954 8.09372 8.24663 9.05784 9.17291 9.72608 10.19349 11.20183 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.029628 B = 0.006546 C = 0.005594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.813465 B = 4276.097431 C = 5004.394542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.299 4.299 2 C -0.098 4.098 3 C 0.268 3.732 4 N -0.585 5.585 5 C -0.269 4.269 6 H 0.075 0.925 7 C 0.005 3.995 8 N -0.885 5.885 9 Si 0.899 3.101 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.291 1.291 13 C 0.158 3.842 14 C -0.107 4.107 15 C -0.020 4.020 16 C -0.175 4.175 17 C 0.094 3.906 18 N -0.500 5.500 19 C 0.094 3.906 20 C -0.172 4.172 21 H 0.190 0.810 22 H 0.092 0.908 23 H 0.037 0.963 24 H 0.254 0.746 25 H 0.039 0.961 26 H 0.050 0.950 27 H 0.077 0.923 28 H 0.070 0.930 29 H 0.132 0.868 30 H 0.150 0.850 31 H 0.151 0.849 32 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.908 -2.905 9.978 11.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.318 4.318 2 C -0.101 4.101 3 C 0.143 3.857 4 N -0.304 5.304 5 C -0.398 4.398 6 H 0.093 0.907 7 C -0.195 4.195 8 N -0.528 5.528 9 Si 0.728 3.272 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.218 1.218 13 C 0.030 3.970 14 C -0.147 4.147 15 C -0.029 4.029 16 C -0.195 4.195 17 C -0.063 4.063 18 N -0.210 5.210 19 C -0.062 4.062 20 C -0.192 4.192 21 H 0.207 0.793 22 H 0.110 0.890 23 H 0.055 0.945 24 H 0.065 0.935 25 H 0.057 0.943 26 H 0.068 0.932 27 H 0.096 0.904 28 H 0.089 0.911 29 H 0.150 0.850 30 H 0.168 0.832 31 H 0.168 0.832 32 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 4.916 -2.797 10.694 12.098 hybrid contribution -0.082 0.583 -1.806 1.899 sum 4.834 -2.215 8.888 10.357 Atomic orbital electron populations 1.24194 0.95360 1.05581 1.06675 1.24277 0.95327 0.95474 0.95008 1.17735 0.82902 0.86233 0.98868 1.44066 1.74652 1.11898 0.99823 1.19208 1.24661 1.03000 0.92908 0.90728 1.24951 0.96058 0.99474 0.98968 1.70151 1.19349 1.45108 1.18174 0.86295 0.79515 0.79414 0.81972 1.20252 1.21479 1.21849 1.20673 0.91873 0.99142 0.85287 1.21439 1.02443 1.02783 0.88022 1.20605 0.92179 0.92697 0.97420 1.22087 1.02465 1.00309 0.94599 1.22669 0.95436 0.94905 0.93283 1.67627 1.11833 1.00737 1.40812 1.22683 0.95964 0.97031 0.90567 1.22113 1.01992 0.98764 0.96372 0.79254 0.89001 0.94503 0.93530 0.94303 0.93191 0.90398 0.91142 0.84999 0.83236 0.83203 0.84845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -6.84 19.25 29.55 0.57 -6.27 16 2 C -0.10 -2.38 11.50 -37.12 -0.43 -2.80 16 3 C 0.27 6.21 5.41 -6.82 -0.04 6.17 16 4 N -0.59 -13.85 2.49 -176.57 -0.44 -14.29 16 5 C -0.27 -7.02 9.63 -15.06 -0.14 -7.16 16 6 H 0.07 1.91 7.92 -52.49 -0.42 1.49 16 7 C 0.01 0.14 4.82 -17.43 -0.08 0.05 16 8 N -0.89 -24.91 9.61 55.49 0.53 -24.38 16 9 Si 0.90 21.06 29.61 -169.99 -5.03 16.02 16 10 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 13 C 0.16 3.10 5.66 -4.04 -0.02 3.08 16 14 C -0.11 -1.73 5.72 -27.88 -0.16 -1.89 16 15 C -0.02 -0.29 5.17 -104.32 -0.54 -0.83 16 16 C -0.17 -2.30 9.82 -39.44 -0.39 -2.69 16 17 C 0.09 1.20 11.18 -17.55 -0.20 1.00 16 18 N -0.50 -7.08 10.36 -13.25 -0.14 -7.22 16 19 C 0.09 1.22 11.18 -17.55 -0.20 1.02 16 20 C -0.17 -2.34 9.82 -39.45 -0.39 -2.72 16 21 H 0.19 3.64 7.80 -54.08 -0.42 3.22 16 22 H 0.09 2.31 6.59 -51.93 -0.34 1.97 16 23 H 0.04 0.74 8.12 -51.93 -0.42 0.31 16 24 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 25 H 0.04 0.75 8.07 -51.93 -0.42 0.33 16 26 H 0.05 1.02 8.04 -51.93 -0.42 0.60 16 27 H 0.08 1.31 8.10 -51.93 -0.42 0.89 16 28 H 0.07 1.11 8.10 -51.93 -0.42 0.69 16 29 H 0.13 1.52 8.06 -52.49 -0.42 1.10 16 30 H 0.15 1.48 8.06 -52.49 -0.42 1.05 16 31 H 0.15 1.52 8.06 -52.49 -0.42 1.10 16 32 H 0.13 1.64 8.06 -52.49 -0.42 1.22 16 LS Contribution 285.83 15.07 4.31 4.31 Total: -1.00 -29.98 285.83 -6.89 -36.87 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: -4.11 Total: 1.74 kcal Atomic # 6 Polarization: -11.03 SS G_CDS: -2.01 Total: -13.05 kcal Atomic # 7 Polarization: -45.85 SS G_CDS: -0.04 Total: -45.89 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.03 Total: 16.02 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -29.98 -6.89 -36.87 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000799200714.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.032 kcal (2) G-P(sol) polarization free energy of solvation -29.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.869 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds