Wall clock time and date at job start Sun Mar 29 2020 21:42:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47208 * 179.97438 * 2 1 4 4 N 1.46507 * 109.46510 * 204.77245 * 3 2 1 5 5 C 1.36942 * 119.99650 * 263.91205 * 4 3 2 6 6 H 1.07999 * 119.99688 * 199.40238 * 5 4 3 7 7 C 1.38810 * 120.00240 * 19.40013 * 5 4 3 8 8 N 1.31622 * 119.99796 * 22.28640 * 7 5 4 9 9 Si 1.86799 * 120.00023 * 202.28463 * 7 5 4 10 10 H 1.48500 * 109.47184 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.46928 * 120.00354 * 9 7 5 12 12 H 1.48506 * 109.47059 * 239.99865 * 9 7 5 13 13 C 1.46499 * 120.00158 * 83.91631 * 4 3 2 14 14 C 1.52994 * 109.47049 * 89.99776 * 13 4 3 15 15 C 1.50703 * 109.47270 * 179.97438 * 14 13 4 16 16 C 1.38652 * 120.78952 * 89.99532 * 15 14 13 17 17 C 1.38203 * 119.16187 * 180.02562 * 16 15 14 18 18 N 1.31865 * 120.76543 * 0.26162 * 17 16 15 19 19 C 1.31873 * 121.72269 * 359.47138 * 18 17 16 20 20 C 1.38202 * 120.76426 * 0.52478 * 19 18 17 21 21 H 4.40638 * 5.51566 * 179.97438 * 4 1 2 22 22 H 1.08995 * 109.47222 * 84.77686 * 3 2 1 23 23 H 1.08995 * 109.47001 * 324.76971 * 3 2 1 24 24 H 0.97003 * 120.00193 * 180.02562 * 8 7 5 25 25 H 1.08997 * 109.46947 * 329.99535 * 13 4 3 26 26 H 1.08998 * 109.46623 * 209.99583 * 13 4 3 27 27 H 1.08997 * 109.47443 * 60.00063 * 14 13 4 28 28 H 1.09006 * 109.46998 * 299.99581 * 14 13 4 29 29 H 1.08002 * 120.41705 * 0.04556 * 16 15 14 30 30 H 1.07999 * 119.61392 * 179.97438 * 17 16 15 31 31 H 1.08001 * 119.61584 * 180.27672 * 19 18 17 32 32 H 1.08000 * 120.41674 * 179.76454 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.2551 0.5788 5 6 3.4799 2.2974 -0.2391 6 1 4.1181 3.0858 0.1318 7 6 3.0108 2.3407 -1.5448 8 7 1.9264 1.6726 -1.8769 9 14 3.9183 3.3471 -2.8305 10 1 5.0975 3.9994 -2.2067 11 1 4.3686 2.4557 -3.9294 12 1 3.0096 4.3867 -3.3772 13 6 3.2509 1.3943 2.0324 14 6 4.6443 0.9453 2.4770 15 6 4.7652 1.0891 3.9723 16 6 4.4191 0.0447 4.8160 17 6 4.5427 0.2134 6.1821 18 7 4.9786 1.3520 6.6845 19 6 5.3215 2.3645 5.9122 20 6 5.2245 2.2691 4.5369 21 1 -1.0502 -0.0002 -0.0003 22 1 3.0094 -0.0927 -1.0233 23 1 3.0097 -0.8386 0.5928 24 1 1.5987 1.7025 -2.7894 25 1 2.4972 0.7750 2.5187 26 1 3.0992 2.4372 2.3109 27 1 5.3980 1.5646 1.9907 28 1 4.7960 -0.0976 2.1985 29 1 4.0578 -0.8889 4.4107 30 1 4.2748 -0.5952 6.8461 31 1 5.6785 3.2802 6.3599 32 1 5.5033 3.1031 3.9100 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000799200714.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:06 Heat of formation + Delta-G solvation = 93.173941 kcal Electronic energy + Delta-G solvation = -15070.431281 eV Core-core repulsion = 12611.640835 eV Total energy + Delta-G solvation = -2458.790446 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.99798 -38.17165 -35.30613 -33.48573 -32.83643 -32.03252 -29.89126 -27.94040 -25.95249 -24.28589 -23.28078 -21.93867 -19.36820 -18.13644 -17.53689 -17.21179 -16.88625 -16.37654 -15.65189 -15.51361 -15.01537 -14.67111 -14.54586 -13.97837 -13.65835 -13.30572 -13.25380 -12.83293 -12.71530 -12.50457 -12.23711 -11.94376 -11.64988 -10.81912 -10.79068 -10.43049 -10.37994 -10.30583 -10.00311 -8.90781 -7.83768 -5.27638 0.28864 0.37378 1.46808 1.50742 1.59544 2.31167 2.51664 2.59356 2.95001 3.28306 3.62401 3.68924 3.93072 4.08387 4.11082 4.30152 4.31144 4.37980 4.62326 4.73092 4.84410 4.92257 4.93606 5.06938 5.17997 5.24532 5.42072 5.59980 5.63734 5.68180 5.87924 6.29324 7.09058 7.09617 7.34988 7.81965 8.25348 9.17504 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.029628 B = 0.006546 C = 0.005594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.813465 B = 4276.097431 C = 5004.394542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.295 4.295 2 C -0.134 4.134 3 C 0.270 3.730 4 N -0.600 5.600 5 C -0.270 4.270 6 H 0.076 0.924 7 C -0.045 4.045 8 N -0.913 5.913 9 Si 0.959 3.041 10 H -0.267 1.267 11 H -0.291 1.291 12 H -0.300 1.300 13 C 0.161 3.839 14 C -0.088 4.088 15 C -0.037 4.037 16 C -0.176 4.176 17 C 0.091 3.909 18 N -0.518 5.518 19 C 0.091 3.909 20 C -0.179 4.179 21 H 0.221 0.779 22 H 0.066 0.934 23 H 0.068 0.932 24 H 0.247 0.753 25 H 0.041 0.959 26 H 0.037 0.963 27 H 0.068 0.932 28 H 0.076 0.924 29 H 0.148 0.852 30 H 0.178 0.822 31 H 0.176 0.824 32 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.437 -3.051 11.197 12.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.314 4.314 2 C -0.137 4.137 3 C 0.144 3.856 4 N -0.320 5.320 5 C -0.400 4.400 6 H 0.093 0.907 7 C -0.242 4.242 8 N -0.558 5.558 9 Si 0.788 3.212 10 H -0.191 1.191 11 H -0.218 1.218 12 H -0.227 1.227 13 C 0.035 3.965 14 C -0.127 4.127 15 C -0.046 4.046 16 C -0.196 4.196 17 C -0.066 4.066 18 N -0.228 5.228 19 C -0.065 4.065 20 C -0.199 4.199 21 H 0.237 0.763 22 H 0.084 0.916 23 H 0.086 0.914 24 H 0.056 0.944 25 H 0.059 0.941 26 H 0.056 0.944 27 H 0.087 0.913 28 H 0.095 0.905 29 H 0.166 0.834 30 H 0.195 0.805 31 H 0.193 0.807 32 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 5.471 -2.943 11.952 13.470 hybrid contribution -0.270 0.619 -2.070 2.177 sum 5.201 -2.324 9.882 11.407 Atomic orbital electron populations 1.25017 0.96425 1.04486 1.05477 1.24749 0.96276 0.96568 0.96140 1.17708 0.82714 0.87104 0.98027 1.44256 1.74908 1.11590 1.01212 1.19483 1.23787 1.03300 0.93425 0.90672 1.25601 0.96821 1.01111 1.00619 1.70301 1.20725 1.46996 1.17777 0.85348 0.78478 0.77787 0.79609 1.19125 1.21763 1.22724 1.20734 0.94018 0.98575 0.83196 1.21089 0.99570 1.02708 0.89357 1.20528 0.93794 0.93855 0.96394 1.22291 1.01932 1.00559 0.94777 1.23141 0.94550 0.95263 0.93601 1.67696 1.12276 1.01422 1.41401 1.23091 0.95359 0.97764 0.90332 1.22272 1.01910 0.98747 0.96958 0.76264 0.91642 0.91412 0.94385 0.94091 0.94445 0.91296 0.90538 0.83406 0.80451 0.80698 0.84102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -13.24 19.25 74.32 1.43 -11.80 16 2 C -0.13 -6.49 11.50 31.13 0.36 -6.13 16 3 C 0.27 12.48 5.41 84.57 0.46 12.94 16 4 N -0.60 -28.27 2.49 -712.55 -1.77 -30.04 16 5 C -0.27 -14.11 9.63 84.03 0.81 -13.30 16 6 H 0.08 3.82 7.92 -2.91 -0.02 3.80 16 7 C -0.04 -2.42 4.82 84.86 0.41 -2.01 16 8 N -0.91 -52.04 9.61 21.65 0.21 -51.84 16 9 Si 0.96 43.68 29.61 68.60 2.03 45.71 16 10 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 11 H -0.29 -13.25 7.11 99.48 0.71 -12.55 16 12 H -0.30 -13.95 7.11 99.48 0.71 -13.24 16 13 C 0.16 6.22 5.66 86.38 0.49 6.71 16 14 C -0.09 -2.73 5.72 29.85 0.17 -2.56 16 15 C -0.04 -1.01 5.17 -19.67 -0.10 -1.11 16 16 C -0.18 -4.24 9.82 22.36 0.22 -4.02 16 17 C 0.09 2.09 11.18 84.68 0.95 3.04 16 18 N -0.52 -13.50 10.36 -195.85 -2.03 -15.52 16 19 C 0.09 2.16 11.18 84.68 0.95 3.11 16 20 C -0.18 -4.57 9.82 22.36 0.22 -4.35 16 21 H 0.22 8.01 7.80 -4.41 -0.03 7.97 16 22 H 0.07 3.36 6.59 -2.39 -0.02 3.34 16 23 H 0.07 2.64 8.12 -2.39 -0.02 2.62 16 24 H 0.25 13.87 8.31 -92.71 -0.77 13.10 16 25 H 0.04 1.55 8.07 -2.39 -0.02 1.53 16 26 H 0.04 1.51 8.04 -2.39 -0.02 1.49 16 27 H 0.07 2.26 8.10 -2.39 -0.02 2.25 16 28 H 0.08 2.28 8.10 -2.38 -0.02 2.26 16 29 H 0.15 3.02 8.06 -2.91 -0.02 2.99 16 30 H 0.18 2.94 8.06 -2.91 -0.02 2.92 16 31 H 0.18 3.12 8.06 -2.91 -0.02 3.09 16 32 H 0.14 3.28 8.06 -2.91 -0.02 3.26 16 Total: -1.00 -63.05 285.83 5.88 -57.18 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: 1.09 Total: 14.01 kcal Atomic # 6 Polarization: -25.85 SS G_CDS: 6.35 Total: -19.49 kcal Atomic # 7 Polarization: -93.81 SS G_CDS: -3.59 Total: -97.40 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Total: -63.05 5.88 -57.18 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000799200714.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.350 kcal (2) G-P(sol) polarization free energy of solvation -63.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.177 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds