Wall clock time and date at job start Sun Mar 29 2020 21:36:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17407 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 N 1.46503 * 109.47310 * 262.24378 * 3 2 1 5 5 C 1.36939 * 119.99490 * 95.93768 * 4 3 2 6 6 H 1.08003 * 119.99595 * 161.99642 * 5 4 3 7 7 C 1.38804 * 120.00173 * 342.26554 * 5 4 3 8 8 N 1.31626 * 120.00391 * 337.04841 * 7 5 4 9 9 Si 1.86799 * 120.00101 * 157.04337 * 7 5 4 10 10 H 1.48504 * 109.46987 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.47338 * 120.00302 * 9 7 5 12 12 H 1.48498 * 109.47735 * 240.00535 * 9 7 5 13 13 C 1.46495 * 120.00230 * 275.94132 * 4 3 2 14 14 C 1.50697 * 109.47050 * 269.99643 * 13 4 3 15 15 C 1.38226 * 120.42125 * 269.72291 * 14 13 4 16 16 N 1.31851 * 120.76366 * 179.73201 * 15 14 13 17 17 C 1.31882 * 121.73006 * 0.58056 * 16 15 14 18 18 C 1.38183 * 120.76185 * 359.67866 * 17 16 15 19 19 C 1.50697 * 120.42031 * 180.02562 * 18 17 16 20 20 C 1.38630 * 120.42231 * 90.00178 * 14 13 4 21 21 H 4.40650 * 5.51391 * 179.97438 * 4 1 2 22 22 H 1.09005 * 109.46863 * 142.25358 * 3 2 1 23 23 H 1.08993 * 109.47672 * 22.24935 * 3 2 1 24 24 H 0.96998 * 119.99674 * 179.97438 * 8 7 5 25 25 H 1.09007 * 109.47218 * 29.99610 * 13 4 3 26 26 H 1.09006 * 109.47465 * 149.99639 * 13 4 3 27 27 H 1.08008 * 119.61605 * 0.02562 * 15 14 13 28 28 H 1.07993 * 119.62027 * 179.71197 * 17 16 15 29 29 H 1.09000 * 109.47072 * 269.98643 * 19 18 17 30 30 H 1.08993 * 109.47034 * 29.98202 * 19 18 17 31 31 H 1.08996 * 109.47338 * 149.98101 * 19 18 17 32 32 H 1.08000 * 120.78588 * 359.95481 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1343 0.1873 1.3686 5 6 3.4787 -0.8998 2.1268 6 1 4.0988 -0.7731 3.0019 7 6 3.0355 -2.1651 1.7674 8 7 1.9624 -2.2981 1.0168 9 14 3.9619 -3.6794 2.3489 10 1 5.1242 -3.2622 3.1737 11 1 3.0577 -4.5305 3.1633 12 1 4.4401 -4.4493 1.1726 13 6 3.2541 1.5367 1.9260 14 6 4.6275 2.0822 1.6305 15 6 5.6664 1.8817 2.5200 16 7 6.8719 2.3514 2.2658 17 6 7.1328 3.0353 1.1687 18 6 6.1429 3.2796 0.2360 19 6 6.4496 4.0614 -1.0152 20 6 4.8637 2.7962 0.4660 21 1 -1.0501 0.0002 -0.0001 22 1 3.0090 0.8135 -0.6291 23 1 3.0098 -0.9502 -0.3891 24 1 1.6530 -3.1824 0.7655 25 1 2.5015 2.1840 1.4756 26 1 3.1024 1.4991 3.0048 27 1 5.4897 1.3299 3.4315 28 1 8.1316 3.4082 0.9971 29 1 6.2809 5.1225 -0.8311 30 1 7.4905 3.9026 -1.2968 31 1 5.7994 3.7248 -1.8226 32 1 4.0702 2.9716 -0.2454 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000799201001.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:32 Heat of formation + Delta-G solvation = 93.615816 kcal Electronic energy + Delta-G solvation = -15403.442816 eV Core-core repulsion = 12944.671531 eV Total energy + Delta-G solvation = -2458.771285 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.08296 -37.97138 -34.38588 -34.29265 -33.46790 -31.91458 -28.35124 -27.90962 -27.54109 -24.28929 -23.54826 -21.65739 -19.35085 -18.26161 -17.70168 -17.28755 -17.01871 -15.72370 -15.62658 -15.36799 -14.87731 -14.57920 -14.02087 -13.85410 -13.51554 -13.42906 -13.24028 -13.12751 -12.83027 -12.65371 -12.25402 -12.21535 -11.97924 -10.86814 -10.77030 -10.41752 -10.36170 -10.28764 -9.61959 -8.95675 -7.85959 -5.27295 0.29803 0.46534 1.43352 1.48204 1.56700 2.31437 2.51055 2.58212 2.96244 3.26215 3.65822 3.89709 3.96946 4.01640 4.10475 4.18261 4.24958 4.41616 4.68027 4.86014 4.89345 4.92272 4.96585 5.05750 5.25929 5.27329 5.43411 5.51723 5.63420 5.67555 5.94512 6.26296 7.07525 7.14100 7.34865 7.79274 8.21649 9.15512 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.023872 B = 0.008690 C = 0.007040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.649814 B = 3221.187579 C = 3976.316114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.289 4.289 2 C -0.136 4.136 3 C 0.273 3.727 4 N -0.591 5.591 5 C -0.266 4.266 6 H 0.073 0.927 7 C -0.042 4.042 8 N -0.910 5.910 9 Si 0.952 3.048 10 H -0.272 1.272 11 H -0.296 1.296 12 H -0.293 1.293 13 C 0.187 3.813 14 C -0.134 4.134 15 C 0.085 3.915 16 N -0.509 5.509 17 C 0.073 3.927 18 C -0.137 4.137 19 C -0.103 4.103 20 C -0.081 4.081 21 H 0.223 0.777 22 H 0.062 0.938 23 H 0.063 0.937 24 H 0.247 0.753 25 H 0.061 0.939 26 H 0.057 0.943 27 H 0.143 0.857 28 H 0.176 0.824 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.072 0.928 32 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.867 11.813 -3.987 13.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.308 4.308 2 C -0.139 4.139 3 C 0.148 3.852 4 N -0.311 5.311 5 C -0.395 4.395 6 H 0.091 0.909 7 C -0.238 4.238 8 N -0.554 5.554 9 Si 0.782 3.218 10 H -0.197 1.197 11 H -0.223 1.223 12 H -0.220 1.220 13 C 0.061 3.939 14 C -0.138 4.138 15 C -0.071 4.071 16 N -0.217 5.217 17 C -0.085 4.085 18 C -0.139 4.139 19 C -0.160 4.160 20 C -0.108 4.108 21 H 0.239 0.761 22 H 0.080 0.920 23 H 0.081 0.919 24 H 0.056 0.944 25 H 0.079 0.921 26 H 0.075 0.925 27 H 0.160 0.840 28 H 0.193 0.807 29 H 0.105 0.895 30 H 0.102 0.898 31 H 0.091 0.909 32 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 6.493 11.498 -3.400 13.635 hybrid contribution -0.801 -1.299 -0.056 1.527 sum 5.692 10.199 -3.456 12.180 Atomic orbital electron populations 1.25026 0.96367 1.06223 1.03141 1.24618 0.96068 0.95570 0.97619 1.17621 0.82915 0.99018 0.85630 1.44147 1.74671 1.01231 1.11010 1.19426 1.24852 0.86016 1.09244 0.90897 1.25472 0.97097 1.00069 1.01210 1.70293 1.21432 1.21758 1.41965 0.85444 0.78624 0.80576 0.77199 1.19673 1.22291 1.21962 1.19747 0.90698 0.85438 0.98039 1.21806 0.99404 0.96837 0.95776 1.22554 0.88061 0.96987 0.99532 1.67608 1.22296 1.10153 1.21657 1.23050 1.00405 0.95633 0.89404 1.21249 0.93678 0.99811 0.99112 1.20749 1.03396 0.99426 0.92406 1.21602 0.97432 0.95607 0.96110 0.76072 0.91975 0.91890 0.94360 0.92077 0.92485 0.83994 0.80685 0.89532 0.89835 0.90923 0.84136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.29 -12.64 19.25 74.32 1.43 -11.21 16 2 C -0.14 -6.47 11.56 31.12 0.36 -6.11 16 3 C 0.27 12.75 5.41 84.57 0.46 13.21 16 4 N -0.59 -28.11 2.47 -716.92 -1.77 -29.89 16 5 C -0.27 -14.10 9.64 84.03 0.81 -13.29 16 6 H 0.07 3.82 7.93 -2.91 -0.02 3.79 16 7 C -0.04 -2.29 4.82 84.86 0.41 -1.88 16 8 N -0.91 -51.94 9.59 21.65 0.21 -51.73 16 9 Si 0.95 44.91 29.61 68.60 2.03 46.94 16 10 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 11 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 12 H -0.29 -13.86 7.11 99.48 0.71 -13.16 16 13 C 0.19 7.33 5.83 85.63 0.50 7.83 16 14 C -0.13 -4.71 5.48 -19.77 -0.11 -4.82 16 15 C 0.09 3.10 10.86 84.69 0.92 4.02 16 16 N -0.51 -17.55 10.36 -195.85 -2.03 -19.58 16 17 C 0.07 2.01 10.86 84.67 0.92 2.93 16 18 C -0.14 -3.49 5.90 -19.77 -0.12 -3.60 16 19 C -0.10 -1.70 10.04 71.24 0.72 -0.98 16 20 C -0.08 -2.41 9.55 22.47 0.21 -2.20 16 21 H 0.22 7.80 7.80 -4.42 -0.03 7.77 16 22 H 0.06 2.48 8.12 -2.38 -0.02 2.46 16 23 H 0.06 3.31 6.50 -2.39 -0.02 3.30 16 24 H 0.25 13.92 8.31 -92.71 -0.77 13.15 16 25 H 0.06 2.23 8.03 -2.38 -0.02 2.21 16 26 H 0.06 2.25 7.99 -2.38 -0.02 2.23 16 27 H 0.14 5.17 8.06 -2.91 -0.02 5.15 16 28 H 0.18 3.60 8.06 -2.91 -0.02 3.58 16 29 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.08 1.12 8.09 -2.39 -0.02 1.10 16 31 H 0.07 1.15 8.10 -2.39 -0.02 1.13 16 32 H 0.14 3.70 8.06 -2.91 -0.02 3.68 16 Total: -1.00 -63.94 285.72 6.04 -57.90 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: 1.09 Total: 12.46 kcal Atomic # 6 Polarization: -22.61 SS G_CDS: 6.51 Total: -16.10 kcal Atomic # 7 Polarization: -97.60 SS G_CDS: -3.60 Total: -101.20 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Total: -63.94 6.04 -57.90 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000799201001.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.516 kcal (2) G-P(sol) polarization free energy of solvation -63.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds