Wall clock time and date at job start Sun Mar 29 2020 21:36:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47392 * 57.92796 * 3 2 1 5 5 C 1.36934 * 120.00176 * 264.43334 * 4 3 2 6 6 H 1.08002 * 120.00279 * 201.05471 * 5 4 3 7 7 C 1.38811 * 120.00019 * 21.06065 * 5 4 3 8 8 N 1.31622 * 119.99884 * 11.71743 * 7 5 4 9 9 Si 1.86794 * 120.00059 * 191.71750 * 7 5 4 10 10 H 1.48501 * 109.47057 * 89.99897 * 9 7 5 11 11 H 1.48501 * 109.47260 * 209.99929 * 9 7 5 12 12 H 1.48497 * 109.47449 * 329.99814 * 9 7 5 13 13 C 1.46500 * 120.00082 * 84.43294 * 4 3 2 14 14 C 1.50705 * 109.47054 * 275.08052 * 13 4 3 15 15 N 1.31878 * 119.62092 * 83.71676 * 14 13 4 16 16 C 1.31854 * 121.72910 * 180.02562 * 15 14 13 17 17 C 1.38229 * 120.76190 * 359.97438 * 16 15 14 18 18 C 1.38633 * 119.16095 * 0.02562 * 17 16 15 19 19 C 1.38185 * 119.61446 * 263.71327 * 14 13 4 20 20 C 1.50704 * 120.41590 * 0.02562 * 19 14 13 21 21 H 4.40644 * 5.51420 * 180.02562 * 4 1 2 22 22 H 1.09000 * 109.46947 * 297.92603 * 3 2 1 23 23 H 1.09005 * 109.47034 * 177.92708 * 3 2 1 24 24 H 0.97005 * 119.99787 * 180.02562 * 8 7 5 25 25 H 1.09000 * 109.47766 * 155.07731 * 13 4 3 26 26 H 1.09003 * 109.46969 * 35.07531 * 13 4 3 27 27 H 1.07998 * 119.62285 * 179.97438 * 16 15 14 28 28 H 1.07996 * 120.42248 * 180.02562 * 17 16 15 29 29 H 1.07998 * 120.79099 * 180.02562 * 18 17 16 30 30 H 1.08992 * 109.47141 * 266.64400 * 20 19 14 31 31 H 1.09000 * 109.47134 * 26.64593 * 20 19 14 32 32 H 1.09001 * 109.46546 * 146.64615 * 20 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1347 -0.7325 -1.1704 5 6 3.4720 -2.0549 -1.0582 6 1 4.1324 -2.5072 -1.7833 7 6 2.9651 -2.8142 -0.0126 8 7 1.9895 -2.3396 0.7327 9 14 3.6675 -4.5094 0.3369 10 1 4.7934 -4.3903 1.2978 11 1 2.6092 -5.3734 0.9190 12 1 4.1583 -5.1124 -0.9284 13 6 3.2626 -0.0509 -2.4609 14 6 1.9365 -0.0770 -3.1763 15 7 1.0269 0.8360 -2.8966 16 6 -0.1470 0.8520 -3.4968 17 6 -0.4669 -0.0970 -4.4496 18 6 0.4641 -1.0729 -4.7701 19 6 1.6877 -1.0573 -4.1179 20 6 2.7326 -2.0971 -4.4311 21 1 -1.0499 0.0000 -0.0003 22 1 3.0095 -0.4805 0.9080 23 1 3.0089 1.0279 -0.0372 24 1 1.6355 -2.8701 1.4636 25 1 4.0126 -0.5586 -3.0673 26 1 3.5668 0.9829 -2.2971 27 1 -0.8670 1.6154 -3.2411 28 1 -1.4299 -0.0785 -4.9381 29 1 0.2420 -1.8268 -5.5109 30 1 3.3314 -1.7664 -5.2796 31 1 3.3777 -2.2368 -3.5636 32 1 2.2444 -3.0403 -4.6765 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000799201729.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:35 Heat of formation + Delta-G solvation = 117.600554 kcal Electronic energy + Delta-G solvation = -16042.330456 eV Core-core repulsion = 13584.599228 eV Total energy + Delta-G solvation = -2457.731228 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.59918 -36.01525 -33.05654 -32.18590 -31.34241 -30.29654 -27.06817 -26.31670 -25.52862 -22.54080 -21.61019 -20.41028 -17.44175 -16.40586 -16.09209 -15.64276 -14.96806 -14.37024 -13.92804 -13.44215 -13.13491 -12.98279 -12.52759 -12.15508 -12.10133 -11.92604 -11.37898 -11.27125 -11.04071 -10.80597 -10.53822 -10.14262 -10.05303 -9.13393 -8.93634 -8.68360 -8.58998 -8.21745 -8.04797 -6.98002 -5.78789 -3.27303 1.80556 1.96772 3.33988 3.39890 3.41987 4.28131 4.51709 4.54075 4.72714 5.07423 5.29993 5.35652 5.47594 5.58080 5.68772 5.78765 5.97087 6.05486 6.10810 6.15437 6.34633 6.43652 6.56624 6.70138 6.78550 6.88098 6.97739 7.36656 7.43240 7.61112 7.69724 8.27912 8.81568 9.09787 9.44932 9.72283 10.20647 11.22086 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.025572 B = 0.010978 C = 0.009272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.705599 B = 2549.842276 C = 3018.994794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.310 4.310 2 C -0.073 4.073 3 C 0.272 3.728 4 N -0.572 5.572 5 C -0.263 4.263 6 H 0.078 0.922 7 C 0.005 3.995 8 N -0.888 5.888 9 Si 0.906 3.094 10 H -0.286 1.286 11 H -0.292 1.292 12 H -0.279 1.279 13 C 0.184 3.816 14 C 0.129 3.871 15 N -0.463 5.463 16 C 0.090 3.910 17 C -0.194 4.194 18 C -0.087 4.087 19 C -0.125 4.125 20 C -0.116 4.116 21 H 0.181 0.819 22 H 0.099 0.901 23 H 0.035 0.965 24 H 0.255 0.745 25 H 0.071 0.929 26 H 0.055 0.945 27 H 0.140 0.860 28 H 0.119 0.881 29 H 0.120 0.880 30 H 0.059 0.941 31 H 0.092 0.908 32 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.447 3.326 -8.138 8.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.329 4.329 2 C -0.076 4.076 3 C 0.147 3.853 4 N -0.290 5.290 5 C -0.392 4.392 6 H 0.095 0.905 7 C -0.195 4.195 8 N -0.530 5.530 9 Si 0.736 3.264 10 H -0.213 1.213 11 H -0.218 1.218 12 H -0.204 1.204 13 C 0.057 3.943 14 C -0.012 4.012 15 N -0.172 5.172 16 C -0.068 4.068 17 C -0.215 4.215 18 C -0.113 4.113 19 C -0.128 4.128 20 C -0.173 4.173 21 H 0.198 0.802 22 H 0.117 0.883 23 H 0.052 0.948 24 H 0.066 0.934 25 H 0.089 0.911 26 H 0.074 0.926 27 H 0.158 0.842 28 H 0.137 0.863 29 H 0.138 0.862 30 H 0.078 0.922 31 H 0.111 0.889 32 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.256 3.858 -7.324 8.281 hybrid contribution -0.882 -1.904 -0.462 2.148 sum -1.138 1.954 -7.785 8.107 Atomic orbital electron populations 1.23880 0.95061 1.08519 1.05460 1.23910 0.94935 0.93206 0.95563 1.17843 0.83153 0.92531 0.91740 1.44286 1.73861 1.08944 1.01943 1.19264 1.22469 0.85979 1.11456 0.90484 1.25101 0.96481 0.98018 0.99878 1.70050 1.25049 1.37137 1.20801 0.86237 0.78069 0.83871 0.78226 1.21278 1.21844 1.20438 1.20094 0.89696 0.97265 0.87260 1.22631 0.98535 0.89415 0.90616 1.67538 1.01672 1.24972 1.23055 1.22519 0.94107 0.97235 0.92891 1.21862 1.00132 0.97847 1.01629 1.21308 0.93380 0.97816 0.98822 1.20670 0.96195 0.98230 0.97713 1.20873 0.97679 0.96001 1.02703 0.80167 0.88335 0.94751 0.93396 0.91121 0.92635 0.84224 0.86261 0.86227 0.92238 0.88925 0.92398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.31 -7.64 19.06 29.55 0.56 -7.07 16 2 C -0.07 -1.87 10.00 -37.12 -0.37 -2.25 16 3 C 0.27 6.66 5.45 -6.83 -0.04 6.62 16 4 N -0.57 -13.83 2.52 -177.95 -0.45 -14.28 16 5 C -0.26 -6.73 8.85 -15.06 -0.13 -6.87 16 6 H 0.08 1.89 6.63 -52.49 -0.35 1.54 16 7 C 0.00 0.13 5.08 -17.43 -0.09 0.04 16 8 N -0.89 -25.10 9.04 55.49 0.50 -24.60 16 9 Si 0.91 21.15 29.57 -169.99 -5.03 16.12 16 10 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 12 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 13 C 0.18 3.83 5.57 -5.19 -0.03 3.80 16 14 C 0.13 2.70 5.94 -82.59 -0.49 2.21 16 15 N -0.46 -9.71 9.02 -9.47 -0.09 -9.80 16 16 C 0.09 1.64 11.18 -17.55 -0.20 1.44 16 17 C -0.19 -3.19 10.11 -39.44 -0.40 -3.59 16 18 C -0.09 -1.50 9.87 -39.28 -0.39 -1.88 16 19 C -0.13 -2.39 5.90 -104.48 -0.62 -3.01 16 20 C -0.12 -1.95 9.31 36.01 0.34 -1.61 16 21 H 0.18 3.92 7.80 -54.10 -0.42 3.50 16 22 H 0.10 2.59 6.41 -51.93 -0.33 2.26 16 23 H 0.03 0.76 8.01 -51.93 -0.42 0.35 16 24 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 25 H 0.07 1.33 6.10 -51.93 -0.32 1.02 16 26 H 0.06 1.09 8.01 -51.93 -0.42 0.67 16 27 H 0.14 2.15 8.06 -52.49 -0.42 1.73 16 28 H 0.12 1.57 8.06 -52.49 -0.42 1.15 16 29 H 0.12 1.71 8.06 -52.49 -0.42 1.28 16 30 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 31 H 0.09 1.75 4.22 -51.93 -0.22 1.53 16 32 H 0.06 0.91 8.12 -51.93 -0.42 0.49 16 LS Contribution 273.72 15.07 4.12 4.12 Total: -1.00 -30.17 273.72 -6.50 -36.67 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: -3.72 Total: 3.92 kcal Atomic # 6 Polarization: -10.32 SS G_CDS: -1.85 Total: -12.17 kcal Atomic # 7 Polarization: -48.64 SS G_CDS: -0.03 Total: -48.67 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.03 Total: 16.12 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -30.17 -6.50 -36.67 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000799201729.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.275 kcal (2) G-P(sol) polarization free energy of solvation -30.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.674 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds