Wall clock time and date at job start Sun Mar 29 2020 21:36:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47392 * 57.92796 * 3 2 1 5 5 C 1.36934 * 120.00176 * 264.43334 * 4 3 2 6 6 H 1.08002 * 120.00279 * 201.05471 * 5 4 3 7 7 C 1.38811 * 120.00019 * 21.06065 * 5 4 3 8 8 N 1.31622 * 119.99884 * 11.71743 * 7 5 4 9 9 Si 1.86794 * 120.00059 * 191.71750 * 7 5 4 10 10 H 1.48501 * 109.47057 * 89.99897 * 9 7 5 11 11 H 1.48501 * 109.47260 * 209.99929 * 9 7 5 12 12 H 1.48497 * 109.47449 * 329.99814 * 9 7 5 13 13 C 1.46500 * 120.00082 * 84.43294 * 4 3 2 14 14 C 1.50705 * 109.47054 * 275.08052 * 13 4 3 15 15 N 1.31878 * 119.62092 * 83.71676 * 14 13 4 16 16 C 1.31854 * 121.72910 * 180.02562 * 15 14 13 17 17 C 1.38229 * 120.76190 * 359.97438 * 16 15 14 18 18 C 1.38633 * 119.16095 * 0.02562 * 17 16 15 19 19 C 1.38185 * 119.61446 * 263.71327 * 14 13 4 20 20 C 1.50704 * 120.41590 * 0.02562 * 19 14 13 21 21 H 4.40644 * 5.51420 * 180.02562 * 4 1 2 22 22 H 1.09000 * 109.46947 * 297.92603 * 3 2 1 23 23 H 1.09005 * 109.47034 * 177.92708 * 3 2 1 24 24 H 0.97005 * 119.99787 * 180.02562 * 8 7 5 25 25 H 1.09000 * 109.47766 * 155.07731 * 13 4 3 26 26 H 1.09003 * 109.46969 * 35.07531 * 13 4 3 27 27 H 1.07998 * 119.62285 * 179.97438 * 16 15 14 28 28 H 1.07996 * 120.42248 * 180.02562 * 17 16 15 29 29 H 1.07998 * 120.79099 * 180.02562 * 18 17 16 30 30 H 1.08992 * 109.47141 * 266.64400 * 20 19 14 31 31 H 1.09000 * 109.47134 * 26.64593 * 20 19 14 32 32 H 1.09001 * 109.46546 * 146.64615 * 20 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1347 -0.7325 -1.1704 5 6 3.4720 -2.0549 -1.0582 6 1 4.1324 -2.5072 -1.7833 7 6 2.9651 -2.8142 -0.0126 8 7 1.9895 -2.3396 0.7327 9 14 3.6675 -4.5094 0.3369 10 1 4.7934 -4.3903 1.2978 11 1 2.6092 -5.3734 0.9190 12 1 4.1583 -5.1124 -0.9284 13 6 3.2626 -0.0509 -2.4609 14 6 1.9365 -0.0770 -3.1763 15 7 1.0269 0.8360 -2.8966 16 6 -0.1470 0.8520 -3.4968 17 6 -0.4669 -0.0970 -4.4496 18 6 0.4641 -1.0729 -4.7701 19 6 1.6877 -1.0573 -4.1179 20 6 2.7326 -2.0971 -4.4311 21 1 -1.0499 0.0000 -0.0003 22 1 3.0095 -0.4805 0.9080 23 1 3.0089 1.0279 -0.0372 24 1 1.6355 -2.8701 1.4636 25 1 4.0126 -0.5586 -3.0673 26 1 3.5668 0.9829 -2.2971 27 1 -0.8670 1.6154 -3.2411 28 1 -1.4299 -0.0785 -4.9381 29 1 0.2420 -1.8268 -5.5109 30 1 3.3314 -1.7664 -5.2796 31 1 3.3777 -2.2368 -3.5636 32 1 2.2444 -3.0403 -4.6765 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000799201729.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:34 Heat of formation + Delta-G solvation = 100.893358 kcal Electronic energy + Delta-G solvation = -16043.054935 eV Core-core repulsion = 13584.599228 eV Total energy + Delta-G solvation = -2458.455707 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.01757 -37.81677 -34.50553 -33.80913 -33.23455 -31.99879 -28.56314 -28.10486 -27.20459 -24.23106 -23.06520 -21.95433 -19.33616 -18.26580 -17.53711 -17.18114 -16.70864 -15.76755 -15.63193 -15.27643 -14.77876 -14.60320 -13.87024 -13.72107 -13.44503 -13.33086 -13.22955 -13.11428 -12.75070 -12.50040 -12.21658 -11.97942 -11.82313 -10.85289 -10.70141 -10.39244 -10.14061 -10.09103 -9.48177 -8.87913 -7.77410 -5.27097 0.40870 0.60017 1.49531 1.50921 1.58048 2.42890 2.59904 2.77292 3.05686 3.37070 3.71642 3.97242 4.05057 4.10892 4.21169 4.25817 4.32495 4.70813 4.75102 4.87548 4.89086 4.93596 5.05025 5.10001 5.34295 5.39595 5.40917 5.58283 5.70771 5.73812 6.06667 6.32201 7.12088 7.39082 7.51791 7.82069 8.28231 9.22405 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.025572 B = 0.010978 C = 0.009272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.705599 B = 2549.842276 C = 3018.994794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.315 4.315 2 C -0.094 4.094 3 C 0.274 3.726 4 N -0.584 5.584 5 C -0.255 4.255 6 H 0.087 0.913 7 C -0.049 4.049 8 N -0.920 5.920 9 Si 0.964 3.036 10 H -0.286 1.286 11 H -0.307 1.307 12 H -0.266 1.266 13 C 0.185 3.815 14 C 0.101 3.899 15 N -0.491 5.491 16 C 0.071 3.929 17 C -0.182 4.182 18 C -0.094 4.094 19 C -0.141 4.141 20 C -0.111 4.111 21 H 0.204 0.796 22 H 0.074 0.926 23 H 0.051 0.949 24 H 0.243 0.757 25 H 0.086 0.914 26 H 0.059 0.941 27 H 0.162 0.838 28 H 0.158 0.842 29 H 0.151 0.849 30 H 0.087 0.913 31 H 0.068 0.932 32 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.958 2.953 -10.160 10.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.335 4.335 2 C -0.097 4.097 3 C 0.149 3.851 4 N -0.303 5.303 5 C -0.385 4.385 6 H 0.105 0.895 7 C -0.245 4.245 8 N -0.565 5.565 9 Si 0.794 3.206 10 H -0.213 1.213 11 H -0.234 1.234 12 H -0.190 1.190 13 C 0.058 3.942 14 C -0.039 4.039 15 N -0.200 5.200 16 C -0.086 4.086 17 C -0.202 4.202 18 C -0.119 4.119 19 C -0.144 4.144 20 C -0.168 4.168 21 H 0.221 0.779 22 H 0.092 0.908 23 H 0.069 0.931 24 H 0.053 0.947 25 H 0.104 0.896 26 H 0.078 0.922 27 H 0.179 0.821 28 H 0.175 0.825 29 H 0.169 0.831 30 H 0.105 0.895 31 H 0.087 0.913 32 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.744 3.499 -9.389 10.048 hybrid contribution -0.765 -1.680 0.032 1.847 sum -1.509 1.819 -9.357 9.651 Atomic orbital electron populations 1.24499 0.95926 1.08069 1.04968 1.24286 0.95638 0.93675 0.96062 1.17739 0.83035 0.93101 0.91255 1.44330 1.74115 1.08582 1.03295 1.19588 1.21593 0.86451 1.10858 0.89507 1.25744 0.97249 1.01085 1.00394 1.70235 1.26867 1.37958 1.21424 0.85306 0.76810 0.80280 0.78250 1.21256 1.23399 1.19009 1.20137 0.90645 0.97262 0.86110 1.22502 0.98316 0.90798 0.92331 1.67459 1.02807 1.25688 1.24066 1.23009 0.93799 0.98519 0.93322 1.22293 1.01362 0.96317 1.00247 1.21740 0.92595 0.98580 0.99019 1.20993 0.97669 0.98075 0.97620 1.20842 0.97211 0.96032 1.02690 0.77909 0.90776 0.93084 0.94672 0.89628 0.92226 0.82088 0.82477 0.83087 0.89474 0.91276 0.91408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.32 -15.47 19.06 74.32 1.42 -14.06 16 2 C -0.09 -4.83 10.00 31.12 0.31 -4.52 16 3 C 0.27 13.63 5.45 84.57 0.46 14.09 16 4 N -0.58 -28.29 2.52 -716.90 -1.81 -30.09 16 5 C -0.26 -13.05 8.85 84.03 0.74 -12.30 16 6 H 0.09 4.18 6.63 -2.91 -0.02 4.16 16 7 C -0.05 -2.63 5.08 84.86 0.43 -2.20 16 8 N -0.92 -53.04 9.04 21.65 0.20 -52.85 16 9 Si 0.96 43.81 29.57 68.60 2.03 45.83 16 10 H -0.29 -12.81 7.11 99.48 0.71 -12.10 16 11 H -0.31 -14.54 7.11 99.48 0.71 -13.83 16 12 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 13 C 0.18 7.58 5.57 85.63 0.48 8.05 16 14 C 0.10 4.11 5.94 42.54 0.25 4.36 16 15 N -0.49 -20.04 9.02 -183.88 -1.66 -21.70 16 16 C 0.07 2.42 11.18 84.69 0.95 3.37 16 17 C -0.18 -5.35 10.11 22.36 0.23 -5.13 16 18 C -0.09 -2.89 9.87 22.47 0.22 -2.67 16 19 C -0.14 -5.08 5.90 -19.77 -0.12 -5.20 16 20 C -0.11 -3.47 9.31 71.24 0.66 -2.81 16 21 H 0.20 8.60 7.80 -4.42 -0.03 8.56 16 22 H 0.07 4.03 6.41 -2.39 -0.02 4.01 16 23 H 0.05 2.30 8.01 -2.38 -0.02 2.28 16 24 H 0.24 14.05 8.31 -92.70 -0.77 13.28 16 25 H 0.09 3.16 6.10 -2.39 -0.01 3.14 16 26 H 0.06 2.33 8.01 -2.39 -0.02 2.31 16 27 H 0.16 4.57 8.06 -2.91 -0.02 4.55 16 28 H 0.16 3.36 8.06 -2.91 -0.02 3.34 16 29 H 0.15 3.63 8.06 -2.91 -0.02 3.61 16 30 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 31 H 0.07 2.50 4.22 -2.39 -0.01 2.49 16 32 H 0.07 1.96 8.12 -2.39 -0.02 1.94 16 Total: -1.00 -64.43 273.72 5.90 -58.52 By element: Atomic # 1 Polarization: 18.18 SS G_CDS: 1.11 Total: 19.29 kcal Atomic # 6 Polarization: -25.05 SS G_CDS: 6.03 Total: -19.01 kcal Atomic # 7 Polarization: -101.36 SS G_CDS: -3.27 Total: -104.63 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.83 kcal Total: -64.43 5.90 -58.52 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000799201729.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.415 kcal (2) G-P(sol) polarization free energy of solvation -64.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.521 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds