Wall clock time and date at job start Sun Mar 29 2020 21:36:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47453 * 147.12379 * 3 2 1 5 5 C 1.36937 * 119.99765 * 271.93417 * 4 3 2 6 6 H 1.07997 * 120.00086 * 317.12995 * 5 4 3 7 7 C 1.38816 * 120.00136 * 137.13510 * 5 4 3 8 8 N 1.31626 * 119.99921 * 345.47358 * 7 5 4 9 9 Si 1.86794 * 120.00090 * 165.47326 * 7 5 4 10 10 H 1.48493 * 109.47455 * 60.00319 * 9 7 5 11 11 H 1.48510 * 109.46958 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.47261 * 299.99733 * 9 7 5 13 13 C 1.46500 * 120.00115 * 91.92862 * 4 3 2 14 14 C 1.50696 * 109.47096 * 90.00288 * 13 4 3 15 15 C 1.38673 * 120.42006 * 260.00102 * 14 13 4 16 16 C 1.38623 * 118.42037 * 179.74943 * 15 14 13 17 17 C 1.38234 * 119.16375 * 0.25227 * 16 15 14 18 18 N 1.31849 * 120.75896 * 0.02562 * 17 16 15 19 19 C 1.31889 * 121.73085 * 359.97438 * 18 17 16 20 20 C 1.50694 * 119.62141 * 179.97438 * 19 18 17 21 21 H 4.40641 * 5.51467 * 180.02562 * 4 1 2 22 22 H 1.08999 * 109.47301 * 27.12153 * 3 2 1 23 23 H 1.09001 * 109.47014 * 267.12383 * 3 2 1 24 24 H 0.96998 * 120.00365 * 180.02562 * 8 7 5 25 25 H 1.09003 * 109.46994 * 330.00343 * 13 4 3 26 26 H 1.09001 * 109.47272 * 210.00339 * 13 4 3 27 27 H 1.08001 * 120.78942 * 0.02562 * 15 14 13 28 28 H 1.08006 * 120.41794 * 180.26989 * 16 15 14 29 29 H 1.07994 * 119.61962 * 179.97438 * 17 16 15 30 30 H 1.09007 * 109.47215 * 89.99819 * 20 19 18 31 31 H 1.08991 * 109.47544 * 210.00051 * 20 19 18 32 32 H 1.09004 * 109.47274 * 330.00648 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1338 1.1608 -0.7497 5 6 3.3244 1.0708 -2.1028 6 1 3.7906 0.1931 -2.5252 7 6 2.9183 2.1079 -2.9314 8 7 2.1055 3.0364 -2.4736 9 14 3.5255 2.1857 -4.6962 10 1 3.1007 0.9608 -5.4203 11 1 2.9512 3.3808 -5.3651 12 1 5.0076 2.2779 -4.7063 13 6 3.4177 2.4173 -0.0520 14 6 4.8540 2.4252 0.4040 15 6 5.1749 2.1236 1.7190 16 6 6.5098 2.1381 2.0923 17 6 7.4696 2.4556 1.1495 18 7 7.1272 2.7426 -0.0910 19 6 5.8674 2.7387 -0.4815 20 6 5.5297 3.0748 -1.9112 21 1 -1.0502 -0.0002 0.0003 22 1 3.0097 -0.9138 -0.4685 23 1 3.0092 0.0524 1.0264 24 1 1.8214 3.7609 -3.0526 25 1 2.7612 2.5087 0.8134 26 1 3.2465 3.2551 -0.7280 27 1 4.4035 1.8789 2.4341 28 1 6.7964 1.9040 3.1070 29 1 8.5117 2.4695 1.4324 30 1 5.5298 2.1630 -2.5085 31 1 4.5432 3.5363 -1.9527 32 1 6.2722 3.7681 -2.3066 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000810001296.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:14 Heat of formation + Delta-G solvation = 110.725678 kcal Electronic energy + Delta-G solvation = -15896.202374 eV Core-core repulsion = 13438.173029 eV Total energy + Delta-G solvation = -2458.029345 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.64941 -36.16653 -32.83908 -32.32838 -31.85917 -30.51402 -27.31478 -26.36953 -25.44627 -22.53360 -21.72760 -20.41490 -17.43242 -16.83510 -16.05856 -15.61898 -14.94535 -14.25074 -14.13126 -13.69016 -13.33051 -13.21709 -12.50170 -12.41222 -12.03471 -11.66393 -11.59377 -11.18963 -11.04017 -10.58881 -10.55099 -10.23643 -9.94472 -9.46768 -9.18415 -9.06870 -8.83763 -8.55133 -8.06430 -6.73699 -5.93820 -3.58910 1.78377 1.91977 3.29385 3.35381 3.37773 3.75888 3.80741 4.37543 4.45608 4.98405 5.20601 5.34087 5.41319 5.51761 5.62830 5.69183 5.82954 6.12598 6.32230 6.33777 6.47128 6.53442 6.60527 6.68932 6.81422 6.89702 7.09248 7.11286 7.36786 7.60272 7.70011 8.39588 8.62892 8.67308 9.02384 9.58611 10.21433 11.06848 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.019811 B = 0.012484 C = 0.008366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.037827 B = 2242.337428 C = 3345.888773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.263 4.263 2 C -0.158 4.158 3 C 0.237 3.763 4 N -0.564 5.564 5 C -0.265 4.265 6 H 0.062 0.938 7 C 0.027 3.973 8 N -0.882 5.882 9 Si 0.887 3.113 10 H -0.280 1.280 11 H -0.287 1.287 12 H -0.271 1.271 13 C 0.180 3.820 14 C -0.125 4.125 15 C -0.084 4.084 16 C -0.191 4.191 17 C 0.077 3.923 18 N -0.497 5.497 19 C 0.152 3.848 20 C -0.106 4.106 21 H 0.200 0.800 22 H 0.068 0.932 23 H 0.059 0.941 24 H 0.259 0.741 25 H 0.036 0.964 26 H 0.110 0.890 27 H 0.123 0.877 28 H 0.121 0.879 29 H 0.142 0.858 30 H 0.090 0.910 31 H 0.096 0.904 32 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.270 -1.048 6.353 7.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.282 4.282 2 C -0.161 4.161 3 C 0.112 3.888 4 N -0.282 5.282 5 C -0.395 4.395 6 H 0.079 0.921 7 C -0.175 4.175 8 N -0.522 5.522 9 Si 0.715 3.285 10 H -0.206 1.206 11 H -0.213 1.213 12 H -0.197 1.197 13 C 0.054 3.946 14 C -0.130 4.130 15 C -0.110 4.110 16 C -0.211 4.211 17 C -0.081 4.081 18 N -0.206 5.206 19 C 0.015 3.985 20 C -0.163 4.163 21 H 0.217 0.783 22 H 0.086 0.914 23 H 0.077 0.923 24 H 0.069 0.931 25 H 0.055 0.945 26 H 0.127 0.873 27 H 0.140 0.860 28 H 0.139 0.861 29 H 0.159 0.841 30 H 0.108 0.892 31 H 0.114 0.886 32 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 4.847 -0.681 5.636 7.465 hybrid contribution -0.681 -0.184 -0.192 0.731 sum 4.166 -0.865 5.444 6.910 Atomic orbital electron populations 1.24589 0.95699 1.03793 1.04167 1.25084 0.96113 0.97609 0.97295 1.18223 0.82030 0.92822 0.95750 1.43699 1.72194 1.08116 1.04214 1.18959 1.34081 1.04900 0.81536 0.92081 1.25363 0.95678 0.98920 0.97508 1.69923 1.31902 1.14345 1.36076 0.86699 0.79380 0.77585 0.84801 1.20565 1.21274 1.19667 1.19970 0.85761 0.92842 0.96028 1.22017 1.01033 0.96980 0.92969 1.21463 0.95935 0.97536 0.96091 1.21919 0.94261 1.04428 1.00486 1.22454 0.99148 0.97404 0.89055 1.67488 1.20687 1.14685 1.17788 1.21233 0.87293 0.93058 0.96953 1.21100 1.02306 1.02655 0.90204 0.78301 0.91405 0.92279 0.93065 0.94537 0.87303 0.85954 0.86113 0.84070 0.89167 0.88582 0.93356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.31 19.25 29.55 0.57 -4.75 16 2 C -0.16 -3.44 13.67 -37.12 -0.51 -3.94 16 3 C 0.24 4.95 6.14 -6.83 -0.04 4.91 16 4 N -0.56 -13.23 2.34 -177.95 -0.42 -13.65 16 5 C -0.27 -6.71 7.43 -15.06 -0.11 -6.82 16 6 H 0.06 1.57 7.87 -52.49 -0.41 1.16 16 7 C 0.03 0.68 3.00 -17.43 -0.05 0.63 16 8 N -0.88 -23.51 11.21 55.49 0.62 -22.89 16 9 Si 0.89 20.22 27.85 -169.99 -4.73 15.48 16 10 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 12 H -0.27 -5.98 6.84 56.52 0.39 -5.59 16 13 C 0.18 4.01 5.00 -5.20 -0.03 3.98 16 14 C -0.13 -2.53 5.48 -104.48 -0.57 -3.11 16 15 C -0.08 -1.44 9.82 -39.28 -0.39 -1.82 16 16 C -0.19 -2.94 10.11 -39.44 -0.40 -3.34 16 17 C 0.08 1.27 11.18 -17.55 -0.20 1.07 16 18 N -0.50 -9.87 10.27 -9.47 -0.10 -9.96 16 19 C 0.15 3.20 6.78 -82.59 -0.56 2.64 16 20 C -0.11 -2.26 7.46 36.00 0.27 -1.99 16 21 H 0.20 3.24 7.80 -54.08 -0.42 2.82 16 22 H 0.07 1.36 8.06 -51.93 -0.42 0.95 16 23 H 0.06 1.09 8.06 -51.93 -0.42 0.67 16 24 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 25 H 0.04 0.78 7.96 -51.93 -0.41 0.37 16 26 H 0.11 2.69 4.12 -51.93 -0.21 2.48 16 27 H 0.12 1.84 8.06 -52.49 -0.42 1.42 16 28 H 0.12 1.45 8.06 -52.48 -0.42 1.02 16 29 H 0.14 1.86 8.06 -52.49 -0.42 1.43 16 30 H 0.09 2.04 5.55 -51.93 -0.29 1.75 16 31 H 0.10 2.19 4.37 -51.93 -0.23 1.96 16 32 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 272.47 15.07 4.11 4.11 Total: -1.00 -28.15 272.47 -6.19 -34.34 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -3.65 Total: 5.11 kcal Atomic # 6 Polarization: -10.52 SS G_CDS: -2.02 Total: -12.54 kcal Atomic # 7 Polarization: -46.61 SS G_CDS: 0.11 Total: -46.50 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -4.73 Total: 15.48 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -28.15 -6.19 -34.34 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810001296.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.064 kcal (2) G-P(sol) polarization free energy of solvation -28.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.338 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds