Wall clock time and date at job start Sun Mar 29 2020 21:36:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47453 * 147.12379 * 3 2 1 5 5 C 1.36937 * 119.99765 * 271.93417 * 4 3 2 6 6 H 1.07997 * 120.00086 * 317.12995 * 5 4 3 7 7 C 1.38816 * 120.00136 * 137.13510 * 5 4 3 8 8 N 1.31626 * 119.99921 * 345.47358 * 7 5 4 9 9 Si 1.86794 * 120.00090 * 165.47326 * 7 5 4 10 10 H 1.48493 * 109.47455 * 60.00319 * 9 7 5 11 11 H 1.48510 * 109.46958 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.47261 * 299.99733 * 9 7 5 13 13 C 1.46500 * 120.00115 * 91.92862 * 4 3 2 14 14 C 1.50696 * 109.47096 * 90.00288 * 13 4 3 15 15 C 1.38673 * 120.42006 * 260.00102 * 14 13 4 16 16 C 1.38623 * 118.42037 * 179.74943 * 15 14 13 17 17 C 1.38234 * 119.16375 * 0.25227 * 16 15 14 18 18 N 1.31849 * 120.75896 * 0.02562 * 17 16 15 19 19 C 1.31889 * 121.73085 * 359.97438 * 18 17 16 20 20 C 1.50694 * 119.62141 * 179.97438 * 19 18 17 21 21 H 4.40641 * 5.51467 * 180.02562 * 4 1 2 22 22 H 1.08999 * 109.47301 * 27.12153 * 3 2 1 23 23 H 1.09001 * 109.47014 * 267.12383 * 3 2 1 24 24 H 0.96998 * 120.00365 * 180.02562 * 8 7 5 25 25 H 1.09003 * 109.46994 * 330.00343 * 13 4 3 26 26 H 1.09001 * 109.47272 * 210.00339 * 13 4 3 27 27 H 1.08001 * 120.78942 * 0.02562 * 15 14 13 28 28 H 1.08006 * 120.41794 * 180.26989 * 16 15 14 29 29 H 1.07994 * 119.61962 * 179.97438 * 17 16 15 30 30 H 1.09007 * 109.47215 * 89.99819 * 20 19 18 31 31 H 1.08991 * 109.47544 * 210.00051 * 20 19 18 32 32 H 1.09004 * 109.47274 * 330.00648 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1338 1.1608 -0.7497 5 6 3.3244 1.0708 -2.1028 6 1 3.7906 0.1931 -2.5252 7 6 2.9183 2.1079 -2.9314 8 7 2.1055 3.0364 -2.4736 9 14 3.5255 2.1857 -4.6962 10 1 3.1007 0.9608 -5.4203 11 1 2.9512 3.3808 -5.3651 12 1 5.0076 2.2779 -4.7063 13 6 3.4177 2.4173 -0.0520 14 6 4.8540 2.4252 0.4040 15 6 5.1749 2.1236 1.7190 16 6 6.5098 2.1381 2.0923 17 6 7.4696 2.4556 1.1495 18 7 7.1272 2.7426 -0.0910 19 6 5.8674 2.7387 -0.4815 20 6 5.5297 3.0748 -1.9112 21 1 -1.0502 -0.0002 0.0003 22 1 3.0097 -0.9138 -0.4685 23 1 3.0092 0.0524 1.0264 24 1 1.8214 3.7609 -3.0526 25 1 2.7612 2.5087 0.8134 26 1 3.2465 3.2551 -0.7280 27 1 4.4035 1.8789 2.4341 28 1 6.7964 1.9040 3.1070 29 1 8.5117 2.4695 1.4324 30 1 5.5298 2.1630 -2.5085 31 1 4.5432 3.5363 -1.9527 32 1 6.2722 3.7681 -2.3066 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000810001296.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:14 Heat of formation + Delta-G solvation = 94.997482 kcal Electronic energy + Delta-G solvation = -15896.884400 eV Core-core repulsion = 13438.173029 eV Total energy + Delta-G solvation = -2458.711371 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.08220 -37.87583 -34.48962 -33.83764 -33.47874 -32.20082 -28.92422 -28.03355 -27.12907 -24.16596 -23.23416 -21.96720 -19.09510 -18.59106 -17.48699 -17.04029 -16.70807 -15.90448 -15.68658 -15.46829 -14.87759 -14.76904 -13.99505 -13.84362 -13.77158 -13.27820 -13.22604 -12.92525 -12.69290 -12.42873 -12.34629 -12.04671 -11.65611 -11.11804 -10.79696 -10.54340 -10.48087 -10.19701 -9.51171 -8.59877 -7.85727 -5.54053 0.39476 0.53867 1.45212 1.48837 1.52375 2.10904 2.17820 2.51653 3.02024 3.27763 3.64191 3.88860 3.95296 4.10364 4.13946 4.32537 4.35095 4.71932 4.75737 4.83858 4.89719 4.96000 4.98747 5.09700 5.33810 5.36424 5.48847 5.54803 5.70138 5.75232 6.06499 6.48596 7.00448 7.15388 7.25959 7.74207 8.33181 9.11851 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.019811 B = 0.012484 C = 0.008366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.037827 B = 2242.337428 C = 3345.888773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C -0.202 4.202 3 C 0.236 3.764 4 N -0.577 5.577 5 C -0.266 4.266 6 H 0.051 0.949 7 C -0.001 4.001 8 N -0.908 5.908 9 Si 0.928 3.072 10 H -0.282 1.282 11 H -0.291 1.291 12 H -0.263 1.263 13 C 0.188 3.812 14 C -0.143 4.143 15 C -0.082 4.082 16 C -0.173 4.173 17 C 0.075 3.925 18 N -0.519 5.519 19 C 0.125 3.875 20 C -0.095 4.095 21 H 0.233 0.767 22 H 0.069 0.931 23 H 0.083 0.917 24 H 0.254 0.746 25 H 0.037 0.963 26 H 0.081 0.919 27 H 0.146 0.854 28 H 0.167 0.833 29 H 0.180 0.820 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.251 -1.647 8.278 9.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.270 4.270 2 C -0.205 4.205 3 C 0.111 3.889 4 N -0.296 5.296 5 C -0.397 4.397 6 H 0.068 0.932 7 C -0.200 4.200 8 N -0.550 5.550 9 Si 0.755 3.245 10 H -0.208 1.208 11 H -0.217 1.217 12 H -0.188 1.188 13 C 0.063 3.937 14 C -0.148 4.148 15 C -0.109 4.109 16 C -0.192 4.192 17 C -0.083 4.083 18 N -0.229 5.229 19 C -0.012 4.012 20 C -0.152 4.152 21 H 0.250 0.750 22 H 0.087 0.913 23 H 0.101 0.899 24 H 0.064 0.936 25 H 0.055 0.945 26 H 0.098 0.902 27 H 0.163 0.837 28 H 0.185 0.815 29 H 0.197 0.803 30 H 0.089 0.911 31 H 0.095 0.905 32 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 5.837 -1.290 7.567 9.643 hybrid contribution -0.937 -0.038 -0.646 1.139 sum 4.899 -1.328 6.921 8.583 Atomic orbital electron populations 1.25465 0.96762 1.02095 1.02638 1.25458 0.97029 0.99164 0.98803 1.18304 0.82023 0.91870 0.96720 1.43836 1.72855 1.08968 1.03894 1.18994 1.33411 1.04464 0.82797 0.93183 1.25720 0.95865 0.98731 0.99721 1.70029 1.33362 1.14849 1.36750 0.86059 0.79455 0.77014 0.81974 1.20809 1.21668 1.18782 1.19728 0.87397 0.91497 0.95122 1.21781 0.99372 0.99040 0.94595 1.21767 0.97755 0.96376 0.94986 1.22369 0.92863 1.01740 1.02276 1.23187 1.01392 0.95656 0.88033 1.67464 1.19962 1.15597 1.19864 1.21094 0.88278 0.95103 0.96681 1.20868 1.01436 1.01619 0.91283 0.75024 0.91278 0.89919 0.93624 0.94467 0.90176 0.83663 0.81535 0.80312 0.91087 0.90489 0.92726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -9.74 19.25 74.32 1.43 -8.31 16 2 C -0.20 -8.63 13.67 31.13 0.43 -8.20 16 3 C 0.24 9.73 6.14 84.57 0.52 10.25 16 4 N -0.58 -27.29 2.34 -716.92 -1.68 -28.96 16 5 C -0.27 -13.77 7.43 84.03 0.62 -13.15 16 6 H 0.05 2.65 7.87 -2.91 -0.02 2.63 16 7 C 0.00 -0.07 3.00 84.86 0.25 0.18 16 8 N -0.91 -49.79 11.21 21.65 0.24 -49.55 16 9 Si 0.93 42.36 27.85 68.60 1.91 44.27 16 10 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 11 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 12 H -0.26 -11.51 6.84 99.48 0.68 -10.83 16 13 C 0.19 8.47 5.00 85.63 0.43 8.90 16 14 C -0.14 -5.70 5.48 -19.77 -0.11 -5.81 16 15 C -0.08 -2.59 9.82 22.47 0.22 -2.37 16 16 C -0.17 -4.53 10.11 22.36 0.23 -4.31 16 17 C 0.07 2.20 11.18 84.69 0.95 3.15 16 18 N -0.52 -19.79 10.27 -183.89 -1.89 -21.68 16 19 C 0.13 5.23 6.78 42.54 0.29 5.52 16 20 C -0.09 -4.17 7.46 71.23 0.53 -3.64 16 21 H 0.23 6.95 7.80 -4.41 -0.03 6.91 16 22 H 0.07 2.77 8.06 -2.39 -0.02 2.75 16 23 H 0.08 2.94 8.06 -2.39 -0.02 2.92 16 24 H 0.25 13.65 8.31 -92.71 -0.77 12.88 16 25 H 0.04 1.60 7.96 -2.39 -0.02 1.58 16 26 H 0.08 4.11 4.12 -2.39 -0.01 4.10 16 27 H 0.15 3.84 8.06 -2.91 -0.02 3.81 16 28 H 0.17 2.88 8.06 -2.91 -0.02 2.86 16 29 H 0.18 3.81 8.06 -2.91 -0.02 3.79 16 30 H 0.07 3.32 5.55 -2.38 -0.01 3.30 16 31 H 0.08 3.66 4.37 -2.39 -0.01 3.65 16 32 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 Total: -1.00 -61.40 272.47 5.46 -55.94 By element: Atomic # 1 Polarization: 16.66 SS G_CDS: 1.09 Total: 17.74 kcal Atomic # 6 Polarization: -23.56 SS G_CDS: 5.79 Total: -17.77 kcal Atomic # 7 Polarization: -96.87 SS G_CDS: -3.32 Total: -100.19 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 1.91 Total: 44.27 kcal Total: -61.40 5.46 -55.94 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810001296.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.938 kcal (2) G-P(sol) polarization free energy of solvation -61.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.940 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds