Wall clock time and date at job start Sun Mar 29 2020 21:30:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00249 * 2 1 4 4 H 1.48503 * 109.46818 * 270.00031 * 3 2 1 5 5 H 1.48497 * 109.47044 * 29.99658 * 3 2 1 6 6 H 1.48493 * 109.47353 * 149.99615 * 3 2 1 7 7 C 1.37877 * 120.00228 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99785 * 359.72154 * 7 2 1 9 9 C 1.50700 * 120.00293 * 180.02562 * 7 2 1 10 10 N 1.46499 * 109.47196 * 179.72489 * 9 7 2 11 11 C 1.34777 * 119.99882 * 179.97438 * 10 9 7 12 12 O 1.21580 * 119.99967 * 355.01552 * 11 10 9 13 13 N 1.34782 * 120.00065 * 175.01442 * 11 10 9 14 14 C 1.46921 * 120.63070 * 184.94658 * 13 11 10 15 15 C 1.52767 * 109.00571 * 233.58487 * 14 13 11 16 16 C 1.53036 * 109.38552 * 305.58568 * 15 14 13 17 17 C 1.53048 * 109.53608 * 61.24407 * 16 15 14 18 18 H 1.08992 * 109.49727 * 58.58374 * 17 16 15 19 19 F 1.39894 * 109.52404 * 178.66800 * 17 16 15 20 20 C 1.46928 * 120.62647 * 5.23127 * 13 11 10 21 21 H 0.96998 * 119.99977 * 0.02562 * 1 2 3 22 22 H 1.08997 * 109.46927 * 299.71955 * 9 7 2 23 23 H 1.09004 * 109.47071 * 59.72172 * 9 7 2 24 24 H 0.96998 * 120.00011 * 359.97438 * 10 9 7 25 25 H 1.08993 * 109.58828 * 353.42333 * 14 13 11 26 26 H 1.09003 * 109.58359 * 113.85049 * 14 13 11 27 27 H 1.09007 * 109.56064 * 185.55399 * 15 14 13 28 28 H 1.08995 * 109.38691 * 65.52221 * 15 14 13 29 29 H 1.09001 * 109.46243 * 301.22442 * 16 15 14 30 30 H 1.08998 * 109.46342 * 181.25708 * 16 15 14 31 31 H 1.09007 * 109.58140 * 246.15108 * 20 13 11 32 32 H 1.08996 * 109.59142 * 6.57504 * 20 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0055 9 6 3.5116 -1.1940 0.0011 10 7 3.9999 -2.5752 0.0082 11 6 5.3250 -2.8215 0.0095 12 8 6.1143 -1.9017 -0.0868 13 7 5.7751 -4.0873 0.1175 14 6 7.2139 -4.3632 0.2290 15 6 7.6127 -5.3689 -0.8496 16 6 6.7240 -6.6100 -0.7404 17 6 5.2625 -6.2142 -0.9633 18 1 5.1564 -5.7522 -1.9448 19 9 4.4538 -7.3536 -0.8936 20 6 4.8366 -5.2178 0.1195 21 1 -0.4850 0.8400 -0.0004 22 1 3.8752 -0.6848 -0.8913 23 1 3.8746 -0.6757 0.8887 24 1 3.3696 -3.3125 0.0121 25 1 7.7750 -3.4391 0.0906 26 1 7.4306 -4.7810 1.2122 27 1 8.6557 -5.6552 -0.7139 28 1 7.4849 -4.9151 -1.8323 29 1 6.8341 -7.0494 0.2510 30 1 7.0222 -7.3377 -1.4951 31 1 4.8557 -5.7066 1.0937 32 1 3.8298 -4.8574 -0.0911 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000845156539.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:30:18 Heat of formation + Delta-G solvation = -82.324098 kcal Electronic energy + Delta-G solvation = -16319.314129 eV Core-core repulsion = 13422.144293 eV Total energy + Delta-G solvation = -2897.169837 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.117 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -47.77732 -39.95768 -37.12029 -34.42666 -32.94347 -32.08974 -30.56502 -27.91254 -25.33306 -23.29860 -22.10881 -20.95149 -19.44935 -18.26254 -16.57355 -16.29792 -16.06585 -15.54654 -15.22754 -14.77129 -14.43175 -14.30429 -13.58560 -13.31239 -13.12630 -12.71303 -12.56664 -12.27708 -12.16833 -11.44953 -11.22489 -11.00411 -10.91640 -10.75733 -10.69098 -9.97242 -9.58762 -9.47004 -8.79371 -8.63369 -8.03441 -6.20982 -4.23232 2.93552 3.27784 3.34624 3.42926 3.62971 4.20137 4.33951 4.37977 4.47011 4.58555 4.67369 4.89563 5.14477 5.16512 5.28438 5.40492 5.53878 5.56902 5.63648 5.78480 5.90437 6.07417 6.54502 6.75259 7.09837 7.19296 7.33099 7.45702 8.23470 8.61121 8.77843 9.11166 9.39567 10.90966 Molecular weight = 230.12amu Principal moments of inertia in cm(-1) A = 0.039322 B = 0.006379 C = 0.005610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.899761 B = 4388.092027 C = 4989.670713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.078 3.922 3 Si 0.877 3.123 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.260 1.260 7 C -0.544 4.544 8 H 0.079 0.921 9 C 0.237 3.763 10 N -0.722 5.722 11 C 0.700 3.300 12 O -0.597 6.597 13 N -0.635 5.635 14 C 0.126 3.874 15 C -0.133 4.133 16 C -0.143 4.143 17 C 0.077 3.923 18 H 0.088 0.912 19 F -0.209 7.209 20 C 0.090 3.910 21 H 0.268 0.732 22 H 0.020 0.980 23 H 0.023 0.977 24 H 0.392 0.608 25 H 0.098 0.902 26 H 0.063 0.937 27 H 0.081 0.919 28 H 0.071 0.929 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.681 -12.887 -0.645 18.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.126 4.126 3 Si 0.704 3.296 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.185 1.185 7 C -0.581 4.581 8 H 0.097 0.903 9 C 0.114 3.886 10 N -0.376 5.376 11 C 0.402 3.598 12 O -0.476 6.476 13 N -0.374 5.374 14 C 0.003 3.997 15 C -0.171 4.171 16 C -0.181 4.181 17 C 0.039 3.961 18 H 0.106 0.894 19 F -0.190 7.190 20 C -0.035 4.035 21 H 0.078 0.922 22 H 0.038 0.962 23 H 0.041 0.959 24 H 0.228 0.772 25 H 0.116 0.884 26 H 0.081 0.919 27 H 0.100 0.900 28 H 0.089 0.911 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.097 0.903 32 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 13.029 -12.045 -0.685 17.757 hybrid contribution -0.142 0.337 -0.038 0.368 sum 12.888 -11.708 -0.723 17.426 Atomic orbital electron populations 1.69880 1.06210 1.27437 1.49440 1.24777 0.94785 0.99154 0.93851 0.86806 0.80571 0.83176 0.79076 1.19824 1.20911 1.18469 1.21081 0.88509 0.95216 1.53344 0.90330 1.19394 0.94916 0.77540 0.96723 1.45611 1.03722 1.11211 1.77084 1.15995 0.83705 0.82053 0.78084 1.90855 1.55437 1.42698 1.58624 1.47166 1.06662 1.04219 1.79370 1.21353 0.80494 1.00082 0.97788 1.21836 0.99567 0.95189 1.00535 1.22105 0.93592 0.98833 1.03568 1.21947 0.89708 0.83214 1.01208 0.89359 1.92818 1.75284 1.53051 1.97823 1.22076 0.94405 0.87997 0.98997 0.92247 0.96190 0.95893 0.77230 0.88407 0.91872 0.89999 0.91050 0.90558 0.90610 0.90348 0.88846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.57 13.96 55.43 0.77 -25.80 16 2 C 0.08 2.22 5.47 -17.82 -0.10 2.12 16 3 Si 0.88 21.53 27.47 -169.99 -4.67 16.86 16 4 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.26 -6.36 6.53 56.52 0.37 -5.99 16 7 C -0.54 -15.03 9.83 -34.44 -0.34 -15.37 16 8 H 0.08 2.26 7.84 -52.49 -0.41 1.85 16 9 C 0.24 5.92 4.50 -5.19 -0.02 5.90 16 10 N -0.72 -15.15 5.46 -66.41 -0.36 -15.52 16 11 C 0.70 13.96 8.30 -86.91 -0.72 13.24 16 12 O -0.60 -14.01 15.77 5.29 0.08 -13.92 16 13 N -0.63 -9.41 2.98 -178.76 -0.53 -9.94 16 14 C 0.13 1.51 6.41 -3.93 -0.03 1.48 16 15 C -0.13 -1.21 6.06 -26.83 -0.16 -1.37 16 16 C -0.14 -1.26 5.62 -26.69 -0.15 -1.41 16 17 C 0.08 0.83 4.03 -26.61 -0.11 0.73 16 18 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 19 F -0.21 -2.55 17.09 2.25 0.04 -2.51 16 20 C 0.09 1.10 6.13 -3.71 -0.02 1.08 16 21 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 22 H 0.02 0.52 7.58 -51.93 -0.39 0.13 16 23 H 0.02 0.60 7.18 -51.93 -0.37 0.23 16 24 H 0.39 7.33 5.81 -40.82 -0.24 7.10 16 25 H 0.10 1.34 6.99 -51.93 -0.36 0.98 16 26 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.08 0.57 8.14 -51.92 -0.42 0.15 16 28 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.09 1.19 5.65 -51.93 -0.29 0.90 16 LS Contribution 266.18 15.07 4.01 4.01 Total: -1.00 -32.18 266.18 -6.50 -38.68 By element: Atomic # 1 Polarization: 5.93 SS G_CDS: -4.20 Total: 1.73 kcal Atomic # 6 Polarization: 8.05 SS G_CDS: -1.65 Total: 6.40 kcal Atomic # 7 Polarization: -51.13 SS G_CDS: -0.12 Total: -51.26 kcal Atomic # 8 Polarization: -14.01 SS G_CDS: 0.08 Total: -13.92 kcal Atomic # 9 Polarization: -2.55 SS G_CDS: 0.04 Total: -2.51 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.67 Total: 16.86 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -32.18 -6.50 -38.68 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845156539.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.639 kcal (2) G-P(sol) polarization free energy of solvation -32.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds