Wall clock time and date at job start Sun Mar 29 2020 21:30:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00249 * 2 1 4 4 H 1.48503 * 109.46818 * 270.00031 * 3 2 1 5 5 H 1.48497 * 109.47044 * 29.99658 * 3 2 1 6 6 H 1.48493 * 109.47353 * 149.99615 * 3 2 1 7 7 C 1.37877 * 120.00228 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99785 * 359.72154 * 7 2 1 9 9 C 1.50700 * 120.00293 * 180.02562 * 7 2 1 10 10 N 1.46499 * 109.47196 * 179.72489 * 9 7 2 11 11 C 1.34777 * 119.99882 * 179.97438 * 10 9 7 12 12 O 1.21580 * 119.99967 * 355.01552 * 11 10 9 13 13 N 1.34782 * 120.00065 * 175.01442 * 11 10 9 14 14 C 1.46921 * 120.63070 * 184.94658 * 13 11 10 15 15 C 1.52767 * 109.00571 * 233.58487 * 14 13 11 16 16 C 1.53036 * 109.38552 * 305.58568 * 15 14 13 17 17 C 1.53048 * 109.53608 * 61.24407 * 16 15 14 18 18 H 1.08992 * 109.49727 * 58.58374 * 17 16 15 19 19 F 1.39894 * 109.52404 * 178.66800 * 17 16 15 20 20 C 1.46928 * 120.62647 * 5.23127 * 13 11 10 21 21 H 0.96998 * 119.99977 * 0.02562 * 1 2 3 22 22 H 1.08997 * 109.46927 * 299.71955 * 9 7 2 23 23 H 1.09004 * 109.47071 * 59.72172 * 9 7 2 24 24 H 0.96998 * 120.00011 * 359.97438 * 10 9 7 25 25 H 1.08993 * 109.58828 * 353.42333 * 14 13 11 26 26 H 1.09003 * 109.58359 * 113.85049 * 14 13 11 27 27 H 1.09007 * 109.56064 * 185.55399 * 15 14 13 28 28 H 1.08995 * 109.38691 * 65.52221 * 15 14 13 29 29 H 1.09001 * 109.46243 * 301.22442 * 16 15 14 30 30 H 1.08998 * 109.46342 * 181.25708 * 16 15 14 31 31 H 1.09007 * 109.58140 * 246.15108 * 20 13 11 32 32 H 1.08996 * 109.59142 * 6.57504 * 20 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0055 9 6 3.5116 -1.1940 0.0011 10 7 3.9999 -2.5752 0.0082 11 6 5.3250 -2.8215 0.0095 12 8 6.1143 -1.9017 -0.0868 13 7 5.7751 -4.0873 0.1175 14 6 7.2139 -4.3632 0.2290 15 6 7.6127 -5.3689 -0.8496 16 6 6.7240 -6.6100 -0.7404 17 6 5.2625 -6.2142 -0.9633 18 1 5.1564 -5.7522 -1.9448 19 9 4.4538 -7.3536 -0.8936 20 6 4.8366 -5.2178 0.1195 21 1 -0.4850 0.8400 -0.0004 22 1 3.8752 -0.6848 -0.8913 23 1 3.8746 -0.6757 0.8887 24 1 3.3696 -3.3125 0.0121 25 1 7.7750 -3.4391 0.0906 26 1 7.4306 -4.7810 1.2122 27 1 8.6557 -5.6552 -0.7139 28 1 7.4849 -4.9151 -1.8323 29 1 6.8341 -7.0494 0.2510 30 1 7.0222 -7.3377 -1.4951 31 1 4.8557 -5.7066 1.0937 32 1 3.8298 -4.8574 -0.0911 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000845156539.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:30:18 Heat of formation + Delta-G solvation = -104.545682 kcal Electronic energy + Delta-G solvation = -16320.277730 eV Core-core repulsion = 13422.144293 eV Total energy + Delta-G solvation = -2898.133437 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.117 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -48.70315 -41.36704 -38.34657 -36.26459 -34.62541 -33.58088 -31.55847 -29.82388 -26.49694 -24.49744 -23.68832 -22.15766 -20.89510 -19.66168 -18.46992 -17.59744 -17.12298 -16.83383 -16.43145 -16.12367 -16.00484 -15.50318 -15.14148 -14.67541 -14.49011 -14.21252 -13.85220 -13.61105 -13.47839 -13.00670 -12.70972 -12.31408 -12.08110 -11.92634 -11.83319 -11.68574 -11.56459 -11.14151 -10.92513 -10.17618 -9.52870 -8.40403 -6.47874 1.33811 1.35303 1.48718 1.63662 2.07733 2.28543 2.95047 2.95801 3.44069 3.50800 3.67650 3.87174 4.04781 4.30662 4.31258 4.52425 4.63819 4.74197 4.84496 4.85690 4.99075 5.03317 5.05453 5.22698 5.32025 5.49326 5.52573 5.84719 6.15960 6.53234 7.00976 7.17082 7.55300 8.74401 Molecular weight = 230.12amu Principal moments of inertia in cm(-1) A = 0.039322 B = 0.006379 C = 0.005610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.899761 B = 4388.092027 C = 4989.670713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.028 3.972 3 Si 0.939 3.061 4 H -0.265 1.265 5 H -0.272 1.272 6 H -0.260 1.260 7 C -0.548 4.548 8 H 0.057 0.943 9 C 0.251 3.749 10 N -0.725 5.725 11 C 0.698 3.302 12 O -0.636 6.636 13 N -0.624 5.624 14 C 0.118 3.882 15 C -0.123 4.123 16 C -0.136 4.136 17 C 0.078 3.922 18 H 0.084 0.916 19 F -0.215 7.215 20 C 0.086 3.914 21 H 0.273 0.727 22 H 0.011 0.989 23 H 0.012 0.988 24 H 0.402 0.598 25 H 0.077 0.923 26 H 0.087 0.913 27 H 0.112 0.888 28 H 0.060 0.940 29 H 0.089 0.911 30 H 0.092 0.908 31 H 0.098 0.902 32 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.315 -13.897 -0.531 19.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.173 4.173 3 Si 0.762 3.238 4 H -0.189 1.189 5 H -0.197 1.197 6 H -0.184 1.184 7 C -0.586 4.586 8 H 0.075 0.925 9 C 0.126 3.874 10 N -0.380 5.380 11 C 0.399 3.601 12 O -0.518 6.518 13 N -0.362 5.362 14 C -0.004 4.004 15 C -0.161 4.161 16 C -0.174 4.174 17 C 0.041 3.959 18 H 0.102 0.898 19 F -0.196 7.196 20 C -0.038 4.038 21 H 0.082 0.918 22 H 0.028 0.972 23 H 0.030 0.970 24 H 0.239 0.761 25 H 0.095 0.905 26 H 0.105 0.895 27 H 0.131 0.869 28 H 0.078 0.922 29 H 0.108 0.892 30 H 0.111 0.889 31 H 0.116 0.884 32 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 14.676 -13.129 -0.571 19.700 hybrid contribution -0.660 0.531 -0.061 0.849 sum 14.016 -12.598 -0.632 18.856 Atomic orbital electron populations 1.69980 1.07705 1.28690 1.50560 1.25588 0.95548 1.02686 0.93451 0.85834 0.79256 0.79150 0.79516 1.18946 1.19682 1.18393 1.21258 0.89869 0.94574 1.52908 0.92510 1.18980 0.93086 0.79653 0.95640 1.45366 1.04764 1.10052 1.77830 1.16103 0.82764 0.83406 0.77801 1.90821 1.56119 1.44545 1.60312 1.47178 1.08428 1.02963 1.77673 1.21658 0.78199 1.00212 1.00317 1.21786 1.01336 0.94306 0.98683 1.22092 0.91448 0.98874 1.04986 1.21952 0.91072 0.82589 1.00290 0.89784 1.92810 1.75748 1.53261 1.97791 1.22254 0.93354 0.87448 1.00780 0.91773 0.97150 0.96981 0.76078 0.90461 0.89454 0.86926 0.92159 0.89192 0.88924 0.88366 0.89921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.91 13.96 21.45 0.30 -55.61 16 2 C 0.03 1.58 5.47 84.65 0.46 2.04 16 3 Si 0.94 44.36 27.47 68.60 1.88 46.24 16 4 H -0.26 -12.09 7.11 99.48 0.71 -11.39 16 5 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 6 H -0.26 -12.17 6.53 99.48 0.65 -11.52 16 7 C -0.55 -30.77 9.83 25.60 0.25 -30.52 16 8 H 0.06 3.35 7.84 -2.91 -0.02 3.33 16 9 C 0.25 12.63 4.50 85.63 0.39 13.02 16 10 N -0.72 -30.59 5.46 -482.30 -2.63 -33.22 16 11 C 0.70 27.68 8.30 179.05 1.49 29.17 16 12 O -0.64 -29.96 15.77 -3.97 -0.06 -30.02 16 13 N -0.62 -17.71 2.98 -837.74 -2.50 -20.21 16 14 C 0.12 2.57 6.41 86.22 0.55 3.12 16 15 C -0.12 -1.85 6.06 30.53 0.19 -1.67 16 16 C -0.14 -1.91 5.62 30.62 0.17 -1.74 16 17 C 0.08 1.53 4.03 30.68 0.12 1.65 16 18 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 19 F -0.22 -4.80 17.09 44.97 0.77 -4.04 16 20 C 0.09 1.95 6.13 86.36 0.53 2.48 16 21 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 22 H 0.01 0.55 7.58 -2.39 -0.02 0.53 16 23 H 0.01 0.64 7.18 -2.39 -0.02 0.63 16 24 H 0.40 15.17 5.81 -92.71 -0.54 14.63 16 25 H 0.08 2.04 6.99 -2.39 -0.02 2.03 16 26 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 27 H 0.11 1.09 8.14 -2.38 -0.02 1.07 16 28 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.10 1.90 8.14 -2.38 -0.02 1.88 16 32 H 0.08 2.06 5.65 -2.39 -0.01 2.05 16 Total: -1.00 -69.22 266.18 2.44 -66.78 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: 0.53 Total: 12.51 kcal Atomic # 6 Polarization: 13.41 SS G_CDS: 4.15 Total: 17.56 kcal Atomic # 7 Polarization: -104.21 SS G_CDS: -4.83 Total: -109.04 kcal Atomic # 8 Polarization: -29.96 SS G_CDS: -0.06 Total: -30.02 kcal Atomic # 9 Polarization: -4.80 SS G_CDS: 0.77 Total: -4.04 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 1.88 Total: 46.24 kcal Total: -69.22 2.44 -66.78 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845156539.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.763 kcal (2) G-P(sol) polarization free energy of solvation -69.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds