Wall clock time and date at job start Sun Mar 29 2020 21:30:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86804 * 120.00224 * 2 1 4 4 H 1.48494 * 109.47141 * 270.00122 * 3 2 1 5 5 H 1.48501 * 109.46732 * 30.00272 * 3 2 1 6 6 H 1.48494 * 109.47024 * 149.99770 * 3 2 1 7 7 C 1.37876 * 119.99802 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00075 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00225 * 180.02562 * 7 2 1 10 10 N 1.46500 * 109.47579 * 179.97438 * 9 7 2 11 11 C 1.34775 * 119.99838 * 179.97438 * 10 9 7 12 12 O 1.21579 * 120.00328 * 355.01340 * 11 10 9 13 13 N 1.34781 * 119.99659 * 175.01707 * 11 10 9 14 14 C 1.46923 * 120.63081 * 4.93402 * 13 11 10 15 15 C 1.53625 * 108.53899 * 126.37002 * 14 13 11 16 16 C 1.53041 * 109.24203 * 54.86165 * 15 14 13 17 17 C 1.53040 * 109.53743 * 298.50997 * 16 15 14 18 18 H 1.08999 * 109.49739 * 301.41166 * 17 16 15 19 19 F 1.39896 * 109.50191 * 181.31503 * 17 16 15 20 20 C 1.46924 * 120.63014 * 185.22335 * 13 11 10 21 21 H 0.96994 * 119.99826 * 359.97438 * 1 2 3 22 22 H 1.09008 * 109.46673 * 299.99828 * 9 7 2 23 23 H 1.09001 * 109.47188 * 59.99369 * 9 7 2 24 24 H 0.97003 * 119.99505 * 359.97438 * 10 9 7 25 25 H 1.09000 * 109.58951 * 246.20458 * 14 13 11 26 26 H 1.09002 * 109.58535 * 6.63600 * 14 13 11 27 27 H 1.08996 * 109.64066 * 294.86639 * 15 14 13 28 28 H 1.09002 * 109.45685 * 174.73838 * 15 14 13 29 29 H 1.08995 * 109.46220 * 178.48712 * 16 15 14 30 30 H 1.09010 * 109.45052 * 58.51803 * 16 15 14 31 31 H 1.09000 * 109.58631 * 353.37090 * 20 13 11 32 32 H 1.08997 * 109.59006 * 113.64802 * 20 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1942 0.0000 10 7 3.9999 -2.5754 -0.0001 11 6 5.3249 -2.8216 -0.0001 12 8 6.1143 -1.9014 -0.0916 13 7 5.7750 -4.0880 0.1011 14 6 4.8361 -5.2182 0.1038 15 6 5.2625 -6.2099 -0.9893 16 6 6.7238 -6.6068 -0.7680 17 6 7.6127 -5.3653 -0.8713 18 1 7.4846 -4.9068 -1.8518 19 9 8.9512 -5.7336 -0.6987 20 6 7.2133 -4.3643 0.2174 21 1 -0.4849 0.8400 0.0004 22 1 3.8752 -0.6797 -0.8896 23 1 3.8746 -0.6809 0.8905 24 1 3.3694 -3.3126 -0.0001 25 1 4.8589 -5.7099 1.0763 26 1 3.8286 -4.8566 -0.1018 27 1 5.1565 -5.7435 -1.9687 28 1 4.6327 -7.0982 -0.9392 29 1 7.0222 -7.3311 -1.5258 30 1 6.8336 -7.0506 0.2216 31 1 7.7748 -3.4391 0.0869 32 1 7.4263 -4.7854 1.1999 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000845156540.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:30:20 Heat of formation + Delta-G solvation = -82.561441 kcal Electronic energy + Delta-G solvation = -16271.935886 eV Core-core repulsion = 13374.755758 eV Total energy + Delta-G solvation = -2897.180129 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.117 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -47.76854 -39.95282 -37.10673 -34.43611 -32.76856 -32.21503 -30.60859 -27.86653 -25.30100 -23.28038 -22.16454 -20.98065 -19.43952 -18.23410 -16.52340 -16.33356 -15.99765 -15.68057 -15.24229 -14.76321 -14.46623 -14.09544 -13.51943 -13.34984 -13.24367 -12.75881 -12.49867 -12.37384 -12.10567 -11.46832 -11.24908 -11.01715 -10.98705 -10.76338 -10.56101 -9.97782 -9.61135 -9.48056 -8.80072 -8.63425 -8.03537 -6.22261 -4.24414 2.92144 3.27347 3.34286 3.42827 3.64445 4.25008 4.33277 4.40636 4.49963 4.54989 4.72768 4.85466 5.12583 5.13469 5.29144 5.44524 5.55474 5.58461 5.63588 5.76007 5.85025 6.05956 6.53949 6.74073 7.09290 7.19078 7.33060 7.45319 8.22706 8.60814 8.76599 9.11238 9.38646 10.89662 Molecular weight = 230.12amu Principal moments of inertia in cm(-1) A = 0.050319 B = 0.005857 C = 0.005360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.316381 B = 4779.730484 C = 5222.773429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.078 3.922 3 Si 0.877 3.123 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.260 1.260 7 C -0.543 4.543 8 H 0.079 0.921 9 C 0.237 3.763 10 N -0.720 5.720 11 C 0.700 3.300 12 O -0.599 6.599 13 N -0.635 5.635 14 C 0.108 3.892 15 C -0.132 4.132 16 C -0.143 4.143 17 C 0.076 3.924 18 H 0.087 0.913 19 F -0.211 7.211 20 C 0.109 3.891 21 H 0.268 0.732 22 H 0.020 0.980 23 H 0.023 0.977 24 H 0.392 0.608 25 H 0.070 0.930 26 H 0.088 0.912 27 H 0.073 0.927 28 H 0.083 0.917 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.103 0.897 32 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.801 -13.565 -0.778 17.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.125 4.125 3 Si 0.703 3.297 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.185 1.185 7 C -0.581 4.581 8 H 0.097 0.903 9 C 0.114 3.886 10 N -0.375 5.375 11 C 0.401 3.599 12 O -0.478 6.478 13 N -0.375 5.375 14 C -0.016 4.016 15 C -0.171 4.171 16 C -0.181 4.181 17 C 0.039 3.961 18 H 0.105 0.895 19 F -0.192 7.192 20 C -0.015 4.015 21 H 0.078 0.922 22 H 0.038 0.962 23 H 0.041 0.959 24 H 0.228 0.772 25 H 0.088 0.912 26 H 0.106 0.894 27 H 0.091 0.909 28 H 0.101 0.899 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.122 0.878 32 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 11.190 -12.708 -0.818 16.952 hybrid contribution 0.034 0.408 -0.029 0.411 sum 11.224 -12.299 -0.847 16.672 Atomic orbital electron populations 1.69878 1.06207 1.27450 1.49469 1.24773 0.94781 0.99156 0.93837 0.86810 0.80584 0.83177 0.79092 1.19820 1.20911 1.18464 1.21069 0.88485 0.95185 1.53342 0.90340 1.19398 0.94903 0.77572 0.96733 1.45572 1.03601 1.11173 1.77114 1.15997 0.83750 0.82050 0.78101 1.90860 1.55419 1.42844 1.58640 1.47136 1.05977 1.04964 1.79409 1.21771 0.93479 0.87419 0.98924 1.21967 0.95463 0.99721 0.99938 1.22104 0.95328 0.97057 1.03608 1.21971 0.76689 0.96246 1.01197 0.89485 1.92802 1.36336 1.92986 1.97054 1.21811 0.81876 1.00243 0.97605 0.92245 0.96202 0.95910 0.77182 0.91187 0.89404 0.90876 0.89859 0.90620 0.90569 0.87840 0.90983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.35 13.96 55.43 0.77 -25.58 16 2 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 3 Si 0.88 21.45 27.47 -169.99 -4.67 16.78 16 4 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.26 -6.35 6.54 56.52 0.37 -5.98 16 7 C -0.54 -14.83 9.83 -34.44 -0.34 -15.17 16 8 H 0.08 2.22 7.84 -52.49 -0.41 1.81 16 9 C 0.24 5.87 4.50 -5.19 -0.02 5.85 16 10 N -0.72 -14.88 5.46 -66.41 -0.36 -15.24 16 11 C 0.70 13.94 8.30 -86.92 -0.72 13.22 16 12 O -0.60 -14.20 15.77 5.30 0.08 -14.12 16 13 N -0.64 -9.41 2.97 -178.24 -0.53 -9.94 16 14 C 0.11 1.19 6.42 -3.49 -0.02 1.16 16 15 C -0.13 -1.16 6.10 -26.39 -0.16 -1.32 16 16 C -0.14 -1.26 5.62 -26.69 -0.15 -1.41 16 17 C 0.08 0.85 4.03 -26.61 -0.11 0.74 16 18 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 19 F -0.21 -2.60 17.09 2.25 0.04 -2.56 16 20 C 0.11 1.43 6.18 -3.71 -0.02 1.41 16 21 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 22 H 0.02 0.52 7.57 -51.92 -0.39 0.13 16 23 H 0.02 0.60 7.20 -51.93 -0.37 0.22 16 24 H 0.39 7.09 5.81 -40.82 -0.24 6.85 16 25 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 26 H 0.09 0.99 5.64 -51.93 -0.29 0.70 16 27 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.08 0.62 8.14 -51.92 -0.42 0.20 16 31 H 0.10 1.57 7.00 -51.93 -0.36 1.20 16 32 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 266.25 15.07 4.01 4.01 Total: -1.00 -32.11 266.25 -6.49 -38.61 By element: Atomic # 1 Polarization: 5.64 SS G_CDS: -4.20 Total: 1.44 kcal Atomic # 6 Polarization: 8.24 SS G_CDS: -1.64 Total: 6.60 kcal Atomic # 7 Polarization: -50.64 SS G_CDS: -0.12 Total: -50.76 kcal Atomic # 8 Polarization: -14.20 SS G_CDS: 0.08 Total: -14.12 kcal Atomic # 9 Polarization: -2.60 SS G_CDS: 0.04 Total: -2.56 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.67 Total: 16.78 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -32.11 -6.49 -38.61 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845156540.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.955 kcal (2) G-P(sol) polarization free energy of solvation -32.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds