Wall clock time and date at job start Sun Mar 29 2020 21:30:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86804 * 120.00224 * 2 1 4 4 H 1.48494 * 109.47141 * 270.00122 * 3 2 1 5 5 H 1.48501 * 109.46732 * 30.00272 * 3 2 1 6 6 H 1.48494 * 109.47024 * 149.99770 * 3 2 1 7 7 C 1.37876 * 119.99802 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00075 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00225 * 180.02562 * 7 2 1 10 10 N 1.46500 * 109.47579 * 179.97438 * 9 7 2 11 11 C 1.34775 * 119.99838 * 179.97438 * 10 9 7 12 12 O 1.21579 * 120.00328 * 355.01340 * 11 10 9 13 13 N 1.34781 * 119.99659 * 175.01707 * 11 10 9 14 14 C 1.46923 * 120.63081 * 4.93402 * 13 11 10 15 15 C 1.53625 * 108.53899 * 126.37002 * 14 13 11 16 16 C 1.53041 * 109.24203 * 54.86165 * 15 14 13 17 17 C 1.53040 * 109.53743 * 298.50997 * 16 15 14 18 18 H 1.08999 * 109.49739 * 301.41166 * 17 16 15 19 19 F 1.39896 * 109.50191 * 181.31503 * 17 16 15 20 20 C 1.46924 * 120.63014 * 185.22335 * 13 11 10 21 21 H 0.96994 * 119.99826 * 359.97438 * 1 2 3 22 22 H 1.09008 * 109.46673 * 299.99828 * 9 7 2 23 23 H 1.09001 * 109.47188 * 59.99369 * 9 7 2 24 24 H 0.97003 * 119.99505 * 359.97438 * 10 9 7 25 25 H 1.09000 * 109.58951 * 246.20458 * 14 13 11 26 26 H 1.09002 * 109.58535 * 6.63600 * 14 13 11 27 27 H 1.08996 * 109.64066 * 294.86639 * 15 14 13 28 28 H 1.09002 * 109.45685 * 174.73838 * 15 14 13 29 29 H 1.08995 * 109.46220 * 178.48712 * 16 15 14 30 30 H 1.09010 * 109.45052 * 58.51803 * 16 15 14 31 31 H 1.09000 * 109.58631 * 353.37090 * 20 13 11 32 32 H 1.08997 * 109.59006 * 113.64802 * 20 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1942 0.0000 10 7 3.9999 -2.5754 -0.0001 11 6 5.3249 -2.8216 -0.0001 12 8 6.1143 -1.9014 -0.0916 13 7 5.7750 -4.0880 0.1011 14 6 4.8361 -5.2182 0.1038 15 6 5.2625 -6.2099 -0.9893 16 6 6.7238 -6.6068 -0.7680 17 6 7.6127 -5.3653 -0.8713 18 1 7.4846 -4.9068 -1.8518 19 9 8.9512 -5.7336 -0.6987 20 6 7.2133 -4.3643 0.2174 21 1 -0.4849 0.8400 0.0004 22 1 3.8752 -0.6797 -0.8896 23 1 3.8746 -0.6809 0.8905 24 1 3.3694 -3.3126 -0.0001 25 1 4.8589 -5.7099 1.0763 26 1 3.8286 -4.8566 -0.1018 27 1 5.1565 -5.7435 -1.9687 28 1 4.6327 -7.0982 -0.9392 29 1 7.0222 -7.3311 -1.5258 30 1 6.8336 -7.0506 0.2216 31 1 7.7748 -3.4391 0.0869 32 1 7.4263 -4.7854 1.1999 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000845156540.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:30:20 Heat of formation + Delta-G solvation = -104.733314 kcal Electronic energy + Delta-G solvation = -16272.897331 eV Core-core repulsion = 13374.755758 eV Total energy + Delta-G solvation = -2898.141573 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.117 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -48.71135 -41.36125 -38.32728 -36.27050 -34.54086 -33.55781 -31.67669 -29.71885 -26.47778 -24.37879 -23.82163 -22.16585 -20.89753 -19.61408 -18.45792 -17.55242 -17.13005 -16.89805 -16.46550 -16.09377 -16.05422 -15.41115 -14.98735 -14.67348 -14.42875 -14.40286 -13.89264 -13.62084 -13.42124 -13.00521 -12.71412 -12.31548 -12.06045 -11.94702 -11.92485 -11.62664 -11.43725 -11.22596 -10.91623 -10.17239 -9.51921 -8.39682 -6.46431 1.33646 1.35714 1.48787 1.61133 2.08806 2.28964 2.96043 3.04368 3.47530 3.52739 3.68379 3.85598 4.00855 4.26378 4.43491 4.51114 4.63038 4.75953 4.81244 4.83941 5.00404 5.04027 5.04488 5.24163 5.31624 5.50412 5.50816 5.85501 6.17491 6.54671 7.04026 7.18572 7.56417 8.74913 Molecular weight = 230.12amu Principal moments of inertia in cm(-1) A = 0.050319 B = 0.005857 C = 0.005360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.316381 B = 4779.730484 C = 5222.773429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.030 3.970 3 Si 0.936 3.064 4 H -0.265 1.265 5 H -0.272 1.272 6 H -0.262 1.262 7 C -0.545 4.545 8 H 0.061 0.939 9 C 0.250 3.750 10 N -0.719 5.719 11 C 0.697 3.303 12 O -0.642 6.642 13 N -0.625 5.625 14 C 0.098 3.902 15 C -0.125 4.125 16 C -0.136 4.136 17 C 0.080 3.920 18 H 0.081 0.919 19 F -0.216 7.216 20 C 0.106 3.894 21 H 0.273 0.727 22 H 0.009 0.991 23 H 0.010 0.990 24 H 0.405 0.595 25 H 0.094 0.906 26 H 0.083 0.917 27 H 0.063 0.937 28 H 0.114 0.886 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.077 0.923 32 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.455 -15.027 -0.715 18.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.171 4.171 3 Si 0.759 3.241 4 H -0.190 1.190 5 H -0.197 1.197 6 H -0.186 1.186 7 C -0.583 4.583 8 H 0.079 0.921 9 C 0.125 3.875 10 N -0.375 5.375 11 C 0.398 3.602 12 O -0.525 6.525 13 N -0.363 5.363 14 C -0.024 4.024 15 C -0.163 4.163 16 C -0.174 4.174 17 C 0.043 3.957 18 H 0.099 0.901 19 F -0.197 7.197 20 C -0.018 4.018 21 H 0.082 0.918 22 H 0.027 0.973 23 H 0.028 0.972 24 H 0.243 0.757 25 H 0.112 0.888 26 H 0.101 0.899 27 H 0.082 0.918 28 H 0.132 0.868 29 H 0.111 0.889 30 H 0.108 0.892 31 H 0.095 0.905 32 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 11.848 -14.248 -0.755 18.546 hybrid contribution -0.157 0.754 -0.036 0.771 sum 11.691 -13.494 -0.790 17.872 Atomic orbital electron populations 1.69969 1.07596 1.28626 1.50645 1.25537 0.95505 1.02500 0.93557 0.85886 0.79252 0.79477 0.79451 1.19041 1.19717 1.18613 1.21238 0.89695 0.94642 1.52698 0.92114 1.18985 0.93215 0.79729 0.95527 1.45280 1.04475 1.10032 1.77717 1.16119 0.82912 0.83350 0.77820 1.90825 1.56253 1.44899 1.60484 1.47136 1.07373 1.04090 1.77706 1.22130 0.92356 0.86570 1.01299 1.21946 0.96021 1.00004 0.98317 1.22094 0.94363 0.95858 1.05064 1.21949 0.76836 0.97057 0.99883 0.90116 1.92795 1.36951 1.92978 1.97010 1.21942 0.80447 0.99856 0.99583 0.91800 0.97321 0.97176 0.75720 0.88775 0.89886 0.91817 0.86783 0.88938 0.89194 0.90495 0.88986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.10 13.96 21.45 0.30 -54.80 16 2 C 0.03 1.66 5.47 84.65 0.46 2.13 16 3 Si 0.94 44.15 27.47 68.60 1.88 46.04 16 4 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 5 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 6 H -0.26 -12.34 6.54 99.48 0.65 -11.69 16 7 C -0.54 -29.99 9.83 25.60 0.25 -29.74 16 8 H 0.06 3.48 7.84 -2.91 -0.02 3.46 16 9 C 0.25 12.46 4.50 85.63 0.39 12.84 16 10 N -0.72 -29.63 5.46 -482.29 -2.63 -32.26 16 11 C 0.70 27.64 8.30 179.05 1.49 29.13 16 12 O -0.64 -30.90 15.77 -3.97 -0.06 -30.96 16 13 N -0.63 -17.71 2.97 -836.08 -2.48 -20.19 16 14 C 0.10 1.91 6.42 86.51 0.56 2.46 16 15 C -0.12 -1.76 6.10 30.82 0.19 -1.57 16 16 C -0.14 -1.90 5.62 30.62 0.17 -1.73 16 17 C 0.08 1.63 4.03 30.67 0.12 1.75 16 18 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 19 F -0.22 -4.93 17.09 44.97 0.77 -4.16 16 20 C 0.11 2.65 6.18 86.36 0.53 3.18 16 21 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 22 H 0.01 0.46 7.57 -2.38 -0.02 0.44 16 23 H 0.01 0.54 7.20 -2.39 -0.02 0.52 16 24 H 0.40 14.42 5.81 -92.71 -0.54 13.89 16 25 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 26 H 0.08 1.71 5.64 -2.39 -0.01 1.70 16 27 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.09 1.07 8.14 -2.38 -0.02 1.05 16 31 H 0.08 2.35 7.00 -2.39 -0.02 2.34 16 32 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 Total: -1.00 -69.21 266.25 2.47 -66.75 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: 0.53 Total: 11.13 kcal Atomic # 6 Polarization: 14.30 SS G_CDS: 4.16 Total: 18.45 kcal Atomic # 7 Polarization: -102.43 SS G_CDS: -4.81 Total: -107.24 kcal Atomic # 8 Polarization: -30.90 SS G_CDS: -0.06 Total: -30.96 kcal Atomic # 9 Polarization: -4.93 SS G_CDS: 0.77 Total: -4.16 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 1.88 Total: 46.04 kcal Total: -69.21 2.47 -66.75 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845156540.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.986 kcal (2) G-P(sol) polarization free energy of solvation -69.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds