Wall clock time and date at job start Sun Mar 29 2020 21:36:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37675 * 119.96041 * 2 1 4 4 C 1.39791 * 119.92180 * 180.25680 * 3 2 1 5 5 C 1.43205 * 120.07289 * 179.72043 * 4 3 2 6 6 N 4.79923 * 134.66597 * 359.72521 * 2 1 3 7 7 C 1.39822 * 119.85021 * 359.44503 * 4 3 2 8 8 C 1.37630 * 119.92415 * 0.27411 * 7 4 3 9 9 C 1.39158 * 119.96630 * 179.70087 * 2 1 3 10 10 N 1.39185 * 119.92159 * 0.02562 * 9 2 1 11 11 C 1.46499 * 119.99956 * 180.02562 * 10 9 2 12 12 C 1.53002 * 109.47335 * 179.97438 * 11 10 9 13 13 C 1.50701 * 109.47325 * 179.97438 * 12 11 10 14 14 H 1.07999 * 120.00006 * 0.02562 * 13 12 11 15 15 C 1.37875 * 120.00040 * 180.02562 * 13 12 11 16 16 N 1.31517 * 119.99907 * 180.02562 * 15 13 12 17 17 Si 1.86803 * 120.00023 * 359.97438 * 15 13 12 18 18 H 1.48496 * 109.46930 * 90.00074 * 17 15 13 19 19 H 1.48503 * 109.47222 * 210.00274 * 17 15 13 20 20 H 1.48500 * 109.47049 * 329.99970 * 17 15 13 21 21 H 1.08995 * 109.46763 * 270.29843 * 1 2 3 22 22 H 1.08999 * 109.47241 * 30.29899 * 1 2 3 23 23 H 1.09004 * 109.47103 * 150.30379 * 1 2 3 24 24 H 1.08001 * 120.03679 * 359.97438 * 3 2 1 25 25 H 1.07999 * 120.03413 * 180.29736 * 7 4 3 26 26 H 1.08003 * 119.96033 * 180.02562 * 8 7 4 27 27 H 0.96999 * 120.00041 * 0.02562 * 10 9 2 28 28 H 1.09000 * 109.47354 * 299.99749 * 11 10 9 29 29 H 1.08998 * 109.47306 * 59.99511 * 11 10 9 30 30 H 1.09000 * 109.47047 * 300.00368 * 12 11 10 31 31 H 1.09006 * 109.46821 * 60.00012 * 12 11 10 32 32 H 0.97000 * 119.99652 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1945 1.1928 0.0000 4 6 3.5924 1.1918 -0.0054 5 6 4.3108 2.4306 -0.0115 6 7 4.8807 3.4133 -0.0164 7 6 4.2876 -0.0213 0.0009 8 6 3.5940 -1.2100 0.0067 9 6 2.2021 -1.2055 0.0063 10 7 1.5038 -2.4095 0.0120 11 6 2.2338 -3.6797 0.0192 12 6 1.2373 -4.8407 0.0252 13 6 1.9883 -6.1472 0.0319 14 1 3.0683 -6.1493 0.0324 15 6 1.2966 -7.3399 0.0375 16 7 1.9520 -8.4801 0.0439 17 14 -0.5714 -7.3363 0.0374 18 1 -1.0663 -7.3419 -1.3627 19 1 -1.0688 -8.5445 0.7432 20 1 -1.0641 -6.1195 0.7317 21 1 -0.3633 0.0054 1.0276 22 1 -0.3634 0.8873 -0.5185 23 1 -0.3633 -0.8927 -0.5091 24 1 1.6545 2.1281 -0.0004 25 1 5.3676 -0.0255 0.0016 26 1 4.1304 -2.1475 0.0121 27 1 0.5338 -2.4076 0.0113 28 1 2.8610 -3.7433 -0.8700 29 1 2.8597 -3.7340 0.9099 30 1 0.6104 -4.7768 0.9146 31 1 0.6111 -4.7865 -0.8654 32 1 1.4653 -9.3192 0.0482 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000846750238.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:04 Heat of formation + Delta-G solvation = 38.915875 kcal Electronic energy + Delta-G solvation = -14582.785227 eV Core-core repulsion = 12121.641975 eV Total energy + Delta-G solvation = -2461.143252 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.79941 -36.85766 -35.54415 -33.29901 -32.70775 -30.96452 -28.91303 -26.92769 -25.11866 -22.40796 -22.16859 -20.48730 -18.14540 -17.39283 -16.87516 -15.82281 -14.69068 -14.43642 -14.17060 -14.02954 -13.92506 -13.46627 -13.35846 -13.21711 -12.82857 -12.63411 -12.33728 -12.11154 -11.66809 -11.62449 -11.32713 -10.89677 -10.63117 -10.21077 -10.02899 -9.69541 -9.45189 -8.85710 -8.70497 -7.25943 -6.20336 -4.21369 1.07896 1.40291 2.77313 3.07862 3.18978 3.27333 3.27870 3.65449 3.98411 4.08421 4.29815 4.79394 4.83133 5.12852 5.12966 5.30901 5.48681 5.58077 5.61614 5.83084 5.87789 5.98844 6.07433 6.23080 6.32095 6.38323 6.44714 6.71892 6.91970 7.09805 7.40163 7.58318 7.62266 7.85927 8.33033 8.82189 9.39814 10.92459 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.049277 B = 0.004755 C = 0.004354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.085065 B = 5886.907437 C = 6429.243321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.179 4.179 3 C -0.019 4.019 4 C -0.116 4.116 5 C 0.272 3.728 6 N -0.454 5.454 7 C -0.019 4.019 8 C -0.202 4.202 9 C 0.260 3.740 10 N -0.728 5.728 11 C 0.126 3.874 12 C -0.022 4.022 13 C -0.526 4.526 14 H 0.076 0.924 15 C 0.071 3.929 16 N -0.897 5.897 17 Si 0.881 3.119 18 H -0.276 1.276 19 H -0.286 1.286 20 H -0.266 1.266 21 H 0.066 0.934 22 H 0.066 0.934 23 H 0.062 0.938 24 H 0.125 0.875 25 H 0.127 0.873 26 H 0.135 0.865 27 H 0.399 0.601 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.022 0.978 31 H 0.018 0.982 32 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.786 14.602 -0.037 14.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.184 4.184 3 C -0.040 4.040 4 C -0.122 4.122 5 C -0.042 4.042 6 N -0.130 5.130 7 C -0.040 4.040 8 C -0.225 4.225 9 C 0.148 3.852 10 N -0.351 5.351 11 C 0.003 3.997 12 C -0.060 4.060 13 C -0.564 4.564 14 H 0.094 0.906 15 C -0.132 4.132 16 N -0.535 5.535 17 Si 0.709 3.291 18 H -0.202 1.202 19 H -0.212 1.212 20 H -0.191 1.191 21 H 0.085 0.915 22 H 0.085 0.915 23 H 0.081 0.919 24 H 0.143 0.857 25 H 0.145 0.855 26 H 0.153 0.847 27 H 0.235 0.765 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.040 0.960 31 H 0.036 0.964 32 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.830 15.665 -0.039 15.771 hybrid contribution -1.502 -0.658 -0.018 1.640 sum -3.332 15.007 -0.057 15.372 Atomic orbital electron populations 1.20589 0.90962 1.02531 1.02125 1.19200 0.95971 0.91237 1.12023 1.20644 0.91616 0.97324 0.94406 1.15672 0.91998 0.86689 1.17884 1.25802 0.93066 0.92799 0.92515 1.81205 1.08994 1.11269 1.11544 1.20826 0.99474 0.90230 0.93507 1.20634 0.92063 0.98768 1.11018 1.18010 0.91593 0.86118 0.89442 1.45428 1.08978 1.03632 1.77089 1.21644 0.95983 0.81124 1.00913 1.19761 0.95442 0.93797 0.96952 1.20876 0.95153 0.88254 1.52138 0.90626 1.24994 0.98524 0.95433 0.94234 1.69895 1.35967 0.97527 1.50071 0.86762 0.85983 0.77841 0.78559 1.20182 1.21197 1.19103 0.91491 0.91466 0.91943 0.85688 0.85507 0.84694 0.76451 0.92078 0.92038 0.95963 0.96421 0.92447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.95 9.56 36.00 0.34 -0.61 16 2 C -0.18 -2.00 5.89 -104.49 -0.62 -2.61 16 3 C -0.02 -0.19 9.39 -39.21 -0.37 -0.56 16 4 C -0.12 -1.32 5.74 -106.80 -0.61 -1.94 16 5 C 0.27 3.47 15.33 -22.47 -0.34 3.12 16 6 N -0.45 -6.69 18.54 41.83 0.78 -5.92 16 7 C -0.02 -0.21 9.75 -39.21 -0.38 -0.59 16 8 C -0.20 -2.50 9.28 -39.45 -0.37 -2.87 16 9 C 0.26 3.34 6.63 -83.83 -0.56 2.78 16 10 N -0.73 -10.23 5.61 -58.62 -0.33 -10.56 16 11 C 0.13 2.15 4.84 -4.04 -0.02 2.13 16 12 C -0.02 -0.46 4.16 -27.88 -0.12 -0.57 16 13 C -0.53 -13.80 9.66 -34.44 -0.33 -14.14 16 14 H 0.08 2.13 7.99 -52.49 -0.42 1.71 16 15 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 16 N -0.90 -26.28 13.96 55.43 0.77 -25.51 16 17 Si 0.88 20.26 27.47 -169.99 -4.67 15.59 16 18 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 19 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 20 H -0.27 -5.79 6.54 56.52 0.37 -5.42 16 21 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 22 H 0.07 0.51 8.08 -51.93 -0.42 0.09 16 23 H 0.06 0.57 6.53 -51.93 -0.34 0.23 16 24 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 25 H 0.13 1.19 8.06 -52.49 -0.42 0.76 16 26 H 0.14 1.66 6.70 -52.48 -0.35 1.31 16 27 H 0.40 5.16 6.44 -40.82 -0.26 4.89 16 28 H 0.06 1.05 7.93 -51.93 -0.41 0.64 16 29 H 0.06 1.06 7.93 -51.93 -0.41 0.64 16 30 H 0.02 0.47 7.20 -51.93 -0.37 0.09 16 31 H 0.02 0.37 7.57 -51.93 -0.39 -0.03 16 32 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 280.97 15.07 4.23 4.23 Total: -1.00 -29.06 280.97 -6.50 -35.56 By element: Atomic # 1 Polarization: 4.43 SS G_CDS: -3.82 Total: 0.61 kcal Atomic # 6 Polarization: -10.55 SS G_CDS: -3.47 Total: -14.02 kcal Atomic # 7 Polarization: -43.20 SS G_CDS: 1.22 Total: -41.98 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -4.67 Total: 15.59 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -29.06 -6.50 -35.56 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846750238.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.476 kcal (2) G-P(sol) polarization free energy of solvation -29.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.560 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds