Wall clock time and date at job start Sun Mar 29 2020 21:36:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37675 * 119.96041 * 2 1 4 4 C 1.39791 * 119.92180 * 180.25680 * 3 2 1 5 5 C 1.43205 * 120.07289 * 179.72043 * 4 3 2 6 6 N 4.79923 * 134.66597 * 359.72521 * 2 1 3 7 7 C 1.39822 * 119.85021 * 359.44503 * 4 3 2 8 8 C 1.37630 * 119.92415 * 0.27411 * 7 4 3 9 9 C 1.39158 * 119.96630 * 179.70087 * 2 1 3 10 10 N 1.39185 * 119.92159 * 0.02562 * 9 2 1 11 11 C 1.46499 * 119.99956 * 180.02562 * 10 9 2 12 12 C 1.53002 * 109.47335 * 179.97438 * 11 10 9 13 13 C 1.50701 * 109.47325 * 179.97438 * 12 11 10 14 14 H 1.07999 * 120.00006 * 0.02562 * 13 12 11 15 15 C 1.37875 * 120.00040 * 180.02562 * 13 12 11 16 16 N 1.31517 * 119.99907 * 180.02562 * 15 13 12 17 17 Si 1.86803 * 120.00023 * 359.97438 * 15 13 12 18 18 H 1.48496 * 109.46930 * 90.00074 * 17 15 13 19 19 H 1.48503 * 109.47222 * 210.00274 * 17 15 13 20 20 H 1.48500 * 109.47049 * 329.99970 * 17 15 13 21 21 H 1.08995 * 109.46763 * 270.29843 * 1 2 3 22 22 H 1.08999 * 109.47241 * 30.29899 * 1 2 3 23 23 H 1.09004 * 109.47103 * 150.30379 * 1 2 3 24 24 H 1.08001 * 120.03679 * 359.97438 * 3 2 1 25 25 H 1.07999 * 120.03413 * 180.29736 * 7 4 3 26 26 H 1.08003 * 119.96033 * 180.02562 * 8 7 4 27 27 H 0.96999 * 120.00041 * 0.02562 * 10 9 2 28 28 H 1.09000 * 109.47354 * 299.99749 * 11 10 9 29 29 H 1.08998 * 109.47306 * 59.99511 * 11 10 9 30 30 H 1.09000 * 109.47047 * 300.00368 * 12 11 10 31 31 H 1.09006 * 109.46821 * 60.00012 * 12 11 10 32 32 H 0.97000 * 119.99652 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1945 1.1928 0.0000 4 6 3.5924 1.1918 -0.0054 5 6 4.3108 2.4306 -0.0115 6 7 4.8807 3.4133 -0.0164 7 6 4.2876 -0.0213 0.0009 8 6 3.5940 -1.2100 0.0067 9 6 2.2021 -1.2055 0.0063 10 7 1.5038 -2.4095 0.0120 11 6 2.2338 -3.6797 0.0192 12 6 1.2373 -4.8407 0.0252 13 6 1.9883 -6.1472 0.0319 14 1 3.0683 -6.1493 0.0324 15 6 1.2966 -7.3399 0.0375 16 7 1.9520 -8.4801 0.0439 17 14 -0.5714 -7.3363 0.0374 18 1 -1.0663 -7.3419 -1.3627 19 1 -1.0688 -8.5445 0.7432 20 1 -1.0641 -6.1195 0.7317 21 1 -0.3633 0.0054 1.0276 22 1 -0.3634 0.8873 -0.5185 23 1 -0.3633 -0.8927 -0.5091 24 1 1.6545 2.1281 -0.0004 25 1 5.3676 -0.0255 0.0016 26 1 4.1304 -2.1475 0.0121 27 1 0.5338 -2.4076 0.0113 28 1 2.8610 -3.7433 -0.8700 29 1 2.8597 -3.7340 0.9099 30 1 0.6104 -4.7768 0.9146 31 1 0.6111 -4.7865 -0.8654 32 1 1.4653 -9.3192 0.0482 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000846750238.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:04 Heat of formation + Delta-G solvation = 22.248270 kcal Electronic energy + Delta-G solvation = -14583.507989 eV Core-core repulsion = 12121.641975 eV Total energy + Delta-G solvation = -2461.866014 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.74426 -37.95906 -36.75665 -34.98862 -33.74859 -32.43397 -30.14661 -27.75866 -26.66404 -23.59185 -23.31954 -21.82618 -19.11771 -19.02606 -18.18425 -16.93591 -16.24110 -15.95302 -15.22405 -15.17929 -15.01735 -14.60227 -14.51513 -14.28367 -14.05688 -13.75786 -13.33974 -13.31352 -13.13442 -12.74175 -12.53859 -12.15033 -11.93213 -11.84107 -11.73403 -11.42789 -10.90376 -10.73708 -9.71948 -8.29221 -8.28711 -6.34639 0.12395 0.52715 1.39613 1.41349 1.51916 1.75735 2.08844 2.37174 2.54048 3.05289 3.07197 3.10338 3.94686 3.99066 4.33118 4.33532 4.48857 4.51619 4.67275 4.76337 4.84664 4.93838 5.04422 5.22581 5.32200 5.33183 5.45546 5.47091 5.54175 5.60616 5.86330 6.22446 6.35218 6.61263 6.71950 6.87068 7.30458 8.87535 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.049277 B = 0.004755 C = 0.004354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.085065 B = 5886.907437 C = 6429.243321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.174 4.174 3 C -0.014 4.014 4 C -0.117 4.117 5 C 0.292 3.708 6 N -0.489 5.489 7 C -0.016 4.016 8 C -0.214 4.214 9 C 0.244 3.756 10 N -0.728 5.728 11 C 0.143 3.857 12 C -0.017 4.017 13 C -0.533 4.533 14 H 0.038 0.962 15 C 0.005 3.995 16 N -0.950 5.950 17 Si 0.952 3.048 18 H -0.268 1.268 19 H -0.289 1.289 20 H -0.240 1.240 21 H 0.075 0.925 22 H 0.085 0.915 23 H 0.061 0.939 24 H 0.150 0.850 25 H 0.142 0.858 26 H 0.129 0.871 27 H 0.406 0.594 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.029 0.971 31 H 0.028 0.972 32 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.814 16.497 -0.042 17.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.179 4.179 3 C -0.035 4.035 4 C -0.123 4.123 5 C -0.021 4.021 6 N -0.167 5.167 7 C -0.038 4.038 8 C -0.237 4.237 9 C 0.135 3.865 10 N -0.354 5.354 11 C 0.019 3.981 12 C -0.055 4.055 13 C -0.571 4.571 14 H 0.056 0.944 15 C -0.192 4.192 16 N -0.590 5.590 17 Si 0.775 3.225 18 H -0.193 1.193 19 H -0.215 1.215 20 H -0.164 1.164 21 H 0.094 0.906 22 H 0.104 0.896 23 H 0.080 0.920 24 H 0.167 0.833 25 H 0.160 0.840 26 H 0.147 0.853 27 H 0.244 0.756 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.048 0.952 31 H 0.046 0.954 32 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.855 17.615 -0.044 18.032 hybrid contribution -0.757 -1.196 -0.018 1.415 sum -4.611 16.419 -0.062 17.054 Atomic orbital electron populations 1.20666 0.89236 1.03460 1.02965 1.19430 0.97236 0.90490 1.10746 1.20902 0.91215 0.98185 0.93166 1.15761 0.92505 0.86052 1.17967 1.25890 0.92240 0.92507 0.91453 1.81233 1.10092 1.12430 1.12896 1.20958 1.00340 0.89720 0.92756 1.20695 0.92274 0.99023 1.11675 1.18200 0.91815 0.86221 0.90313 1.45081 1.09104 1.02811 1.78401 1.21178 0.94930 0.81542 1.00420 1.19640 0.95824 0.92539 0.97482 1.21271 0.94047 0.90907 1.50913 0.94402 1.26001 1.04264 0.94918 0.94005 1.70062 1.38280 0.98413 1.52237 0.85638 0.79113 0.78620 0.79115 1.19275 1.21507 1.16361 0.90639 0.89617 0.91974 0.83276 0.84010 0.85311 0.75620 0.92733 0.92717 0.95237 0.95399 0.92456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.55 9.56 71.24 0.68 -0.87 16 2 C -0.17 -3.37 5.89 -19.78 -0.12 -3.48 16 3 C -0.01 -0.24 9.39 22.51 0.21 -0.03 16 4 C -0.12 -2.39 5.74 -21.27 -0.12 -2.51 16 5 C 0.29 6.90 15.33 88.33 1.35 8.25 16 6 N -0.49 -13.78 18.54 19.00 0.35 -13.43 16 7 C -0.02 -0.34 9.75 22.51 0.22 -0.12 16 8 C -0.21 -5.04 9.28 22.36 0.21 -4.84 16 9 C 0.24 5.81 6.63 38.42 0.25 6.06 16 10 N -0.73 -19.12 5.61 -339.39 -1.91 -21.03 16 11 C 0.14 4.79 4.84 86.38 0.42 5.21 16 12 C -0.02 -0.70 4.16 29.85 0.12 -0.57 16 13 C -0.53 -28.41 9.66 25.60 0.25 -28.16 16 14 H 0.04 2.23 7.99 -2.91 -0.02 2.20 16 15 C 0.01 0.30 5.47 84.65 0.46 0.76 16 16 N -0.95 -57.22 13.96 21.45 0.30 -56.92 16 17 Si 0.95 41.10 27.47 68.60 1.88 42.98 16 18 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 19 H -0.29 -12.53 7.11 99.48 0.71 -11.82 16 20 H -0.24 -9.29 6.54 99.48 0.65 -8.64 16 21 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 22 H 0.08 0.94 8.08 -2.39 -0.02 0.92 16 23 H 0.06 0.93 6.53 -2.39 -0.02 0.91 16 24 H 0.15 1.96 8.06 -2.91 -0.02 1.94 16 25 H 0.14 2.43 8.06 -2.91 -0.02 2.40 16 26 H 0.13 3.16 6.70 -2.91 -0.02 3.14 16 27 H 0.41 9.45 6.44 -92.71 -0.60 8.85 16 28 H 0.05 1.88 7.93 -2.39 -0.02 1.86 16 29 H 0.05 1.88 7.93 -2.39 -0.02 1.86 16 30 H 0.03 1.17 7.20 -2.39 -0.02 1.15 16 31 H 0.03 1.09 7.57 -2.38 -0.02 1.07 16 32 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 Total: -1.00 -63.10 280.97 5.05 -58.05 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: 0.48 Total: 10.64 kcal Atomic # 6 Polarization: -24.25 SS G_CDS: 3.94 Total: -20.30 kcal Atomic # 7 Polarization: -90.12 SS G_CDS: -1.25 Total: -91.38 kcal Atomic # 14 Polarization: 41.10 SS G_CDS: 1.88 Total: 42.98 kcal Total: -63.10 5.05 -58.05 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846750238.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.300 kcal (2) G-P(sol) polarization free energy of solvation -63.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.052 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds