Wall clock time and date at job start Sun Mar 29 2020 21:36:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46507 * 109.47410 * 12.12998 * 3 2 1 5 5 C 1.36935 * 120.00055 * 85.62247 * 4 3 2 6 6 H 1.07996 * 119.99933 * 321.75210 * 5 4 3 7 7 C 1.38813 * 119.99723 * 141.75958 * 5 4 3 8 8 N 1.31622 * 119.99917 * 156.19387 * 7 5 4 9 9 Si 1.86795 * 120.00051 * 336.19766 * 7 5 4 10 10 H 1.48504 * 109.47205 * 95.38273 * 9 7 5 11 11 H 1.48500 * 109.47065 * 215.38516 * 9 7 5 12 12 H 1.48504 * 109.47207 * 335.38281 * 9 7 5 13 13 C 1.46499 * 119.99426 * 265.62520 * 4 3 2 14 14 C 1.50697 * 109.47348 * 89.99976 * 13 4 3 15 15 C 1.38667 * 120.42140 * 89.99496 * 14 13 4 16 16 C 1.38632 * 118.42148 * 180.02562 * 15 14 13 17 17 C 1.38226 * 119.16345 * 359.97438 * 16 15 14 18 18 C 1.50701 * 119.61953 * 179.97438 * 17 16 15 19 19 N 1.31859 * 120.75906 * 0.02562 * 17 16 15 20 20 C 1.31888 * 121.72625 * 359.70255 * 19 17 16 21 21 H 4.40648 * 5.51313 * 179.97438 * 4 1 2 22 22 H 1.09002 * 109.46924 * 132.12726 * 3 2 1 23 23 H 1.08991 * 109.47461 * 252.12332 * 3 2 1 24 24 H 0.96994 * 120.00014 * 179.97438 * 8 7 5 25 25 H 1.09005 * 109.46939 * 209.99822 * 13 4 3 26 26 H 1.09002 * 109.47290 * 329.99748 * 13 4 3 27 27 H 1.08000 * 120.78942 * 0.02562 * 15 14 13 28 28 H 1.07999 * 120.41637 * 179.97438 * 16 15 14 29 29 H 1.08998 * 109.46578 * 89.99873 * 18 17 16 30 30 H 1.08998 * 109.46688 * 210.00358 * 18 17 16 31 31 H 1.09000 * 109.46776 * 330.00317 * 18 17 16 32 32 H 1.07999 * 119.61273 * 180.31030 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.3495 -0.2902 5 6 3.2781 -1.7616 -1.5882 6 1 2.5516 -1.4678 -2.3313 7 6 4.3570 -2.5572 -1.9489 8 7 4.2794 -3.3286 -3.0125 9 14 5.9190 -2.5329 -0.9247 10 1 5.8871 -3.6499 0.0533 11 1 7.0972 -2.6881 -1.8152 12 1 6.0145 -1.2413 -0.1980 13 6 3.4709 -2.2587 0.8083 14 6 2.2506 -3.0556 1.1917 15 6 1.9847 -4.2709 0.5792 16 6 0.8503 -4.9691 0.9634 17 6 0.0282 -4.4348 1.9376 18 6 -1.2079 -5.1848 2.3626 19 7 0.3125 -3.2759 2.4987 20 6 1.3855 -2.5870 2.1619 21 1 -1.0498 -0.0004 0.0001 22 1 3.0090 0.6902 -0.7622 23 1 3.0092 0.3162 0.9779 24 1 5.0333 -3.8842 -3.2647 25 1 4.2623 -2.9370 0.4895 26 1 3.8119 -1.6806 1.6671 27 1 2.6456 -4.6642 -0.1791 28 1 0.6120 -5.9186 0.5072 29 1 -0.9623 -5.8508 3.1898 30 1 -1.9716 -4.4755 2.6815 31 1 -1.5837 -5.7707 1.5238 32 1 1.5880 -1.6436 2.6472 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000846888511.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:16 Heat of formation + Delta-G solvation = 93.561308 kcal Electronic energy + Delta-G solvation = -15656.717666 eV Core-core repulsion = 13197.944018 eV Total energy + Delta-G solvation = -2458.773648 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.13134 -38.14580 -34.46327 -34.30499 -33.12610 -32.79541 -29.77554 -28.25009 -26.43831 -24.40337 -23.52801 -22.28439 -19.33064 -18.59866 -17.72818 -17.04955 -16.93213 -16.16982 -15.96378 -15.29268 -15.10951 -14.90044 -14.27708 -14.11681 -13.89150 -13.61163 -13.25596 -13.04896 -13.01654 -12.69230 -12.32263 -12.07301 -11.73289 -11.32767 -10.89028 -10.65046 -10.62322 -10.35036 -9.61516 -8.94836 -8.23433 -5.65077 0.24730 0.42647 1.32670 1.44821 1.55689 1.98657 2.09720 2.40898 2.83670 3.08747 3.48392 3.60250 3.76698 3.89777 4.05874 4.08342 4.22586 4.45464 4.65406 4.74109 4.74298 4.77457 4.83114 4.93596 4.93959 5.20886 5.25977 5.31891 5.54379 5.87055 5.91239 6.15459 6.85121 6.93773 7.09574 7.54389 7.95238 8.95488 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.023855 B = 0.010273 C = 0.008507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.490547 B = 2725.052252 C = 3290.773757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.200 4.200 3 C 0.236 3.764 4 N -0.595 5.595 5 C -0.263 4.263 6 H 0.028 0.972 7 C -0.006 4.006 8 N -0.939 5.939 9 Si 0.936 3.064 10 H -0.273 1.273 11 H -0.307 1.307 12 H -0.245 1.245 13 C 0.167 3.833 14 C -0.150 4.150 15 C -0.073 4.073 16 C -0.177 4.177 17 C 0.101 3.899 18 C -0.093 4.093 19 N -0.502 5.502 20 C 0.108 3.892 21 H 0.228 0.772 22 H 0.080 0.920 23 H 0.104 0.896 24 H 0.265 0.735 25 H 0.049 0.951 26 H 0.090 0.910 27 H 0.109 0.891 28 H 0.149 0.851 29 H 0.090 0.910 30 H 0.075 0.925 31 H 0.088 0.912 32 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.276 -0.375 11.733 12.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.259 4.259 2 C -0.202 4.202 3 C 0.112 3.888 4 N -0.315 5.315 5 C -0.393 4.393 6 H 0.046 0.954 7 C -0.204 4.204 8 N -0.582 5.582 9 Si 0.764 3.236 10 H -0.200 1.200 11 H -0.236 1.236 12 H -0.168 1.168 13 C 0.042 3.958 14 C -0.154 4.154 15 C -0.100 4.100 16 C -0.197 4.197 17 C -0.037 4.037 18 C -0.150 4.150 19 N -0.212 5.212 20 C -0.050 4.050 21 H 0.245 0.755 22 H 0.098 0.902 23 H 0.122 0.878 24 H 0.074 0.926 25 H 0.067 0.933 26 H 0.108 0.892 27 H 0.128 0.872 28 H 0.167 0.833 29 H 0.109 0.891 30 H 0.094 0.906 31 H 0.107 0.893 32 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -5.702 -0.121 12.246 13.509 hybrid contribution 1.143 -0.586 -1.173 1.739 sum -4.560 -0.706 11.073 11.996 Atomic orbital electron populations 1.25369 0.96644 1.01257 1.02639 1.25137 0.96663 0.99398 0.99004 1.18257 0.82448 0.86325 1.01808 1.44142 1.76265 1.09545 1.01577 1.18427 1.04968 1.30301 0.85571 0.95430 1.25998 1.00435 0.96731 0.97198 1.70032 1.32054 1.25844 1.30228 0.85968 0.79677 0.79802 0.78184 1.19996 1.23573 1.16845 1.20384 0.92099 0.92197 0.91142 1.21752 1.01248 0.95622 0.96799 1.21568 0.97075 0.94646 0.96723 1.22143 0.95576 1.02266 0.99702 1.21774 0.97370 0.91656 0.92883 1.20712 0.92175 0.99263 1.02841 1.67501 1.18331 1.07537 1.27801 1.22590 0.89421 0.98638 0.94324 0.75496 0.90241 0.87795 0.92596 0.93320 0.89191 0.87248 0.83283 0.89129 0.90631 0.89338 0.82234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -8.55 19.25 74.32 1.43 -7.12 16 2 C -0.20 -7.67 13.53 31.12 0.42 -7.25 16 3 C 0.24 8.84 6.20 84.57 0.52 9.36 16 4 N -0.60 -26.69 2.01 -716.91 -1.44 -28.13 16 5 C -0.26 -14.50 9.88 84.03 0.83 -13.67 16 6 H 0.03 1.77 8.06 -2.91 -0.02 1.74 16 7 C -0.01 -0.33 5.27 84.86 0.45 0.12 16 8 N -0.94 -56.68 13.97 21.65 0.30 -56.38 16 9 Si 0.94 43.11 25.19 68.60 1.73 44.84 16 10 H -0.27 -11.99 6.66 99.48 0.66 -11.32 16 11 H -0.31 -14.51 7.11 99.48 0.71 -13.80 16 12 H -0.25 -10.40 7.11 99.48 0.71 -9.70 16 13 C 0.17 6.69 4.72 85.63 0.40 7.10 16 14 C -0.15 -5.87 5.48 -19.78 -0.11 -5.98 16 15 C -0.07 -2.96 9.86 22.47 0.22 -2.74 16 16 C -0.18 -5.98 9.74 22.36 0.22 -5.76 16 17 C 0.10 3.20 6.78 42.55 0.29 3.48 16 18 C -0.09 -2.02 10.17 71.24 0.72 -1.30 16 19 N -0.50 -17.42 10.27 -183.88 -1.89 -19.31 16 20 C 0.11 3.80 10.74 84.67 0.91 4.71 16 21 H 0.23 6.41 7.80 -4.43 -0.03 6.38 16 22 H 0.08 2.97 8.08 -2.39 -0.02 2.95 16 23 H 0.10 3.08 7.84 -2.39 -0.02 3.06 16 24 H 0.26 15.12 8.31 -92.71 -0.77 14.34 16 25 H 0.05 2.13 3.43 -2.38 -0.01 2.12 16 26 H 0.09 2.93 7.81 -2.39 -0.02 2.91 16 27 H 0.11 4.88 8.06 -2.91 -0.02 4.86 16 28 H 0.15 4.14 8.06 -2.91 -0.02 4.12 16 29 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.09 1.60 8.08 -2.39 -0.02 1.58 16 32 H 0.16 4.94 8.06 -2.91 -0.02 4.91 16 Total: -1.00 -66.71 283.79 6.06 -60.65 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: 1.05 Total: 17.38 kcal Atomic # 6 Polarization: -25.34 SS G_CDS: 6.31 Total: -19.03 kcal Atomic # 7 Polarization: -100.80 SS G_CDS: -3.03 Total: -103.83 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 1.73 Total: 44.84 kcal Total: -66.71 6.06 -60.65 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846888511.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.209 kcal (2) G-P(sol) polarization free energy of solvation -66.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.648 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds