Wall clock time and date at job start Sun Mar 29 2020 21:36:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47204 * 221.10604 * 3 2 1 5 5 C 1.36939 * 119.99795 * 264.60693 * 4 3 2 6 6 H 1.08000 * 119.99869 * 196.40075 * 5 4 3 7 7 C 1.38807 * 120.00306 * 16.40762 * 5 4 3 8 8 N 1.31622 * 119.99749 * 22.62876 * 7 5 4 9 9 Si 1.86796 * 120.00245 * 202.63097 * 7 5 4 10 10 H 1.48507 * 109.46952 * 59.99949 * 9 7 5 11 11 H 1.48503 * 109.47170 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47409 * 299.99619 * 9 7 5 13 13 C 1.46505 * 120.00449 * 84.60514 * 4 3 2 14 14 C 1.50696 * 109.46847 * 270.00483 * 13 4 3 15 15 C 1.38676 * 120.79278 * 89.99934 * 14 13 4 16 16 C 1.38186 * 119.16332 * 179.97438 * 15 14 13 17 17 N 1.31877 * 120.76541 * 0.02562 * 16 15 14 18 18 C 1.31856 * 121.72885 * 359.97438 * 17 16 15 19 19 C 1.50704 * 119.62093 * 179.97438 * 18 17 16 20 20 C 1.38222 * 120.76138 * 359.97438 * 18 17 16 21 21 H 4.40639 * 5.51430 * 179.97438 * 4 1 2 22 22 H 1.08999 * 109.47248 * 101.10247 * 3 2 1 23 23 H 1.09006 * 109.46920 * 341.10120 * 3 2 1 24 24 H 0.97001 * 119.99957 * 179.97438 * 8 7 5 25 25 H 1.08993 * 109.47161 * 150.00097 * 13 4 3 26 26 H 1.09006 * 109.46729 * 29.99692 * 13 4 3 27 27 H 1.08000 * 120.41650 * 359.97438 * 15 14 13 28 28 H 1.07998 * 119.60985 * 180.02562 * 16 15 14 29 29 H 1.09001 * 109.46793 * 89.99921 * 19 18 17 30 30 H 1.08993 * 109.47064 * 209.99889 * 19 18 17 31 31 H 1.08997 * 109.47008 * 329.99998 * 19 18 17 32 32 H 1.08007 * 120.41991 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1339 1.0416 0.9081 5 6 3.4667 2.2764 0.4184 6 1 4.0650 2.9501 1.0138 7 6 3.0349 2.6622 -0.8432 8 7 1.9813 2.0866 -1.3827 9 14 3.9491 3.9981 -1.7752 10 1 5.3566 3.5764 -1.9911 11 1 3.2932 4.2229 -3.0885 12 1 3.9247 5.2567 -0.9874 13 6 3.2658 0.7616 2.3401 14 6 1.9772 1.1081 3.0403 15 6 0.9740 0.1624 3.1899 16 6 -0.1939 0.5163 3.8382 17 7 -0.3600 1.7362 4.3109 18 6 0.5720 2.6607 4.1869 19 6 0.3317 4.0400 4.7447 20 6 1.7667 2.3795 3.5513 21 1 -1.0501 -0.0001 -0.0003 22 1 3.0093 0.1987 -1.0084 23 1 3.0098 -0.9715 0.3329 24 1 1.6794 2.3564 -2.2641 25 1 4.0768 1.3606 2.7542 26 1 3.4848 -0.2963 2.4847 27 1 1.1039 -0.8382 2.8046 28 1 -0.9797 -0.2146 3.9590 29 1 0.6823 4.0810 5.7760 30 1 0.8738 4.7730 4.1473 31 1 -0.7346 4.2635 4.7143 32 1 2.5261 3.1411 3.4525 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000856740808.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:19 Heat of formation + Delta-G solvation = 112.793313 kcal Electronic energy + Delta-G solvation = -15740.949668 eV Core-core repulsion = 13283.009982 eV Total energy + Delta-G solvation = -2457.939686 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.57517 -36.27751 -32.92847 -32.08882 -31.56305 -30.46462 -27.15264 -26.42861 -25.87758 -22.68593 -21.89870 -20.03916 -17.51210 -16.47629 -15.81640 -15.62802 -15.04810 -14.65393 -14.02106 -13.66897 -13.47896 -13.12845 -12.74494 -12.18046 -12.01456 -11.73822 -11.58441 -11.50139 -11.16452 -10.84712 -10.58008 -10.36348 -10.06390 -9.17078 -8.99704 -8.80860 -8.66220 -8.43037 -8.23130 -7.13355 -5.87733 -3.27262 1.79901 1.99007 3.32690 3.39893 3.40142 4.15239 4.37498 4.42519 4.50905 4.85640 5.22828 5.29854 5.47134 5.64538 5.74430 5.80630 5.84764 5.89590 5.95082 6.03928 6.11721 6.36063 6.45276 6.52459 6.62719 6.78047 7.14358 7.15996 7.39023 7.42183 7.66259 8.17519 8.60468 9.00541 9.19556 9.65861 10.11245 11.15013 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.024372 B = 0.009862 C = 0.008402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.604479 B = 2838.471498 C = 3331.590128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.294 4.294 2 C -0.097 4.097 3 C 0.266 3.734 4 N -0.572 5.572 5 C -0.267 4.267 6 H 0.077 0.923 7 C 0.006 3.994 8 N -0.882 5.882 9 Si 0.903 3.097 10 H -0.282 1.282 11 H -0.291 1.291 12 H -0.283 1.283 13 C 0.175 3.825 14 C -0.038 4.038 15 C -0.161 4.161 16 C 0.090 3.910 17 N -0.502 5.502 18 C 0.112 3.888 19 C -0.097 4.097 20 C -0.153 4.153 21 H 0.187 0.813 22 H 0.098 0.902 23 H 0.038 0.962 24 H 0.256 0.744 25 H 0.062 0.938 26 H 0.054 0.946 27 H 0.121 0.879 28 H 0.142 0.858 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.327 -2.477 7.698 8.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.313 4.313 2 C -0.100 4.100 3 C 0.141 3.859 4 N -0.291 5.291 5 C -0.396 4.396 6 H 0.095 0.905 7 C -0.194 4.194 8 N -0.524 5.524 9 Si 0.732 3.268 10 H -0.208 1.208 11 H -0.217 1.217 12 H -0.209 1.209 13 C 0.048 3.952 14 C -0.050 4.050 15 C -0.182 4.182 16 C -0.066 4.066 17 N -0.214 5.214 18 C -0.026 4.026 19 C -0.155 4.155 20 C -0.173 4.173 21 H 0.204 0.796 22 H 0.116 0.884 23 H 0.056 0.944 24 H 0.067 0.933 25 H 0.081 0.919 26 H 0.073 0.927 27 H 0.139 0.861 28 H 0.160 0.840 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -0.446 -2.220 7.906 8.224 hybrid contribution 0.491 0.698 -1.204 1.476 sum 0.045 -1.522 6.702 6.873 Atomic orbital electron populations 1.24105 0.95245 1.06448 1.05552 1.24142 0.95145 0.94895 0.95805 1.17895 0.82998 0.88668 0.96305 1.44447 1.73762 1.11375 0.99476 1.19198 1.26539 0.93997 0.99836 0.90531 1.24954 0.96259 0.98719 0.99497 1.70142 1.21091 1.44226 1.16966 0.86366 0.79657 0.81480 0.79293 1.20849 1.21679 1.20921 1.20096 0.91472 0.98783 0.84819 1.21521 0.99513 0.93029 0.90913 1.21825 0.95025 1.00472 1.00892 1.22416 0.96051 0.92960 0.95176 1.67358 1.31726 1.01808 1.20489 1.21098 0.90207 0.95300 0.95960 1.20612 1.02812 0.91619 1.00413 1.21711 0.98392 0.97444 0.99801 0.79608 0.88449 0.94402 0.93332 0.91942 0.92735 0.86116 0.84033 0.91252 0.91072 0.91184 0.85698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.29 -6.75 19.03 29.55 0.56 -6.19 16 2 C -0.10 -2.31 10.33 -37.12 -0.38 -2.69 16 3 C 0.27 6.11 5.45 -6.83 -0.04 6.07 16 4 N -0.57 -13.38 2.49 -177.95 -0.44 -13.82 16 5 C -0.27 -6.87 9.66 -15.06 -0.15 -7.01 16 6 H 0.08 1.92 7.91 -52.49 -0.41 1.51 16 7 C 0.01 0.16 4.84 -17.43 -0.08 0.07 16 8 N -0.88 -24.64 9.49 55.49 0.53 -24.12 16 9 Si 0.90 21.02 29.61 -169.99 -5.03 15.98 16 10 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 12 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 13 C 0.17 3.41 5.87 -5.19 -0.03 3.38 16 14 C -0.04 -0.75 5.25 -104.32 -0.55 -1.30 16 15 C -0.16 -3.00 8.58 -39.44 -0.34 -3.34 16 16 C 0.09 1.63 11.18 -17.55 -0.20 1.44 16 17 N -0.50 -9.68 10.27 -9.47 -0.10 -9.78 16 18 C 0.11 2.08 6.78 -82.59 -0.56 1.52 16 19 C -0.10 -1.42 10.17 36.01 0.37 -1.06 16 20 C -0.15 -2.97 9.45 -39.44 -0.37 -3.34 16 21 H 0.19 3.74 7.80 -54.08 -0.42 3.32 16 22 H 0.10 2.44 6.43 -51.93 -0.33 2.11 16 23 H 0.04 0.75 7.97 -51.93 -0.41 0.33 16 24 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 25 H 0.06 1.15 7.98 -51.93 -0.41 0.74 16 26 H 0.05 0.94 7.91 -51.93 -0.41 0.53 16 27 H 0.12 2.09 8.06 -52.49 -0.42 1.67 16 28 H 0.14 2.13 8.06 -52.49 -0.42 1.71 16 29 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.07 0.98 8.08 -51.93 -0.42 0.56 16 31 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.13 2.31 8.06 -52.48 -0.42 1.89 16 LS Contribution 282.63 15.07 4.26 4.26 Total: -1.00 -29.91 282.63 -6.63 -36.55 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: -4.08 Total: 3.38 kcal Atomic # 6 Polarization: -10.68 SS G_CDS: -1.77 Total: -12.45 kcal Atomic # 7 Polarization: -47.71 SS G_CDS: -0.01 Total: -47.72 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.03 Total: 15.98 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -29.91 -6.63 -36.55 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000856740808.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.341 kcal (2) G-P(sol) polarization free energy of solvation -29.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.548 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds