Wall clock time and date at job start Sun Mar 29 2020 21:46:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36933 * 120.00038 * 2 1 4 4 H 1.07997 * 119.99783 * 203.04012 * 3 2 1 5 5 C 1.38810 * 120.00291 * 23.03896 * 3 2 1 6 6 N 1.31622 * 119.99541 * 13.06089 * 5 3 2 7 7 Si 1.86795 * 120.00463 * 193.05780 * 5 3 2 8 8 H 1.48507 * 109.46913 * 59.99946 * 7 5 3 9 9 H 1.48493 * 109.47474 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47008 * 300.00440 * 7 5 3 11 11 C 1.46500 * 119.99791 * 179.97438 * 2 1 3 12 12 C 1.50700 * 109.47102 * 89.99963 * 11 2 1 13 13 C 1.38828 * 119.67110 * 270.25145 * 12 11 2 14 14 C 1.36624 * 120.52934 * 180.25644 * 13 12 11 15 15 C 1.39633 * 119.76588 * 359.74699 * 14 13 12 16 16 C 1.46487 * 134.03429 * 180.02562 * 15 14 13 17 17 C 1.34241 * 106.99501 * 179.97438 * 16 15 14 18 18 N 1.36829 * 109.93384 * 359.97438 * 17 16 15 19 19 H 0.96991 * 125.07039 * 179.97438 * 18 17 16 20 20 C 1.37691 * 109.86989 * 0.02562 * 18 17 16 21 21 C 1.37753 * 119.66542 * 90.00065 * 12 11 2 22 22 H 1.09010 * 109.47346 * 275.12895 * 1 2 3 23 23 H 1.08995 * 109.47390 * 35.13067 * 1 2 3 24 24 H 1.09008 * 109.47404 * 155.13038 * 1 2 3 25 25 H 0.97006 * 119.99694 * 179.97438 * 6 5 3 26 26 H 1.09000 * 109.47343 * 330.00069 * 11 2 1 27 27 H 1.09001 * 109.47411 * 209.99986 * 11 2 1 28 28 H 1.08002 * 119.73382 * 359.97438 * 13 12 11 29 29 H 1.08007 * 120.11823 * 179.77374 * 14 13 12 30 30 H 1.08001 * 126.50583 * 0.02562 * 16 15 14 31 31 H 1.08000 * 125.03524 * 179.97438 * 17 16 15 32 32 H 1.08008 * 120.11165 * 0.02562 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1650 1.2231 -0.3661 5 6 1.5387 2.3401 0.4704 6 7 0.4131 2.2595 1.1478 7 14 2.3140 4.0076 0.1423 8 1 2.4149 4.2268 -1.3230 9 1 1.4727 5.0721 0.7458 10 1 3.6712 4.0494 0.7437 11 6 2.1974 -1.2688 0.0006 12 6 2.4486 -1.7044 -1.4201 13 6 1.5160 -2.5019 -2.0694 14 6 1.7283 -2.9113 -3.3554 15 6 2.8900 -2.5205 -4.0244 16 6 3.4243 -2.7673 -5.3659 17 6 4.6000 -2.1242 -5.4443 18 7 4.8620 -1.4852 -4.2631 19 1 5.6533 -0.9551 -4.0797 20 6 3.8354 -1.7078 -3.3729 21 6 3.5988 -1.3031 -2.0630 22 1 -0.3634 0.0919 1.0236 23 1 -0.3634 0.8404 -0.5913 24 1 -0.3634 -0.9324 -0.4322 25 1 -0.0137 3.0661 1.4769 26 1 1.6084 -2.0282 0.5147 27 1 3.1499 -1.1383 0.5143 28 1 0.6175 -2.8048 -1.5522 29 1 1.0000 -3.5346 -3.8530 30 1 2.9601 -3.3545 -6.1444 31 1 5.2438 -2.1127 -6.3114 32 1 4.3167 -0.6797 -1.5506 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000862225639.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:37 Heat of formation + Delta-G solvation = 80.816549 kcal Electronic energy + Delta-G solvation = -15399.080585 eV Core-core repulsion = 12939.754283 eV Total energy + Delta-G solvation = -2459.326302 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.79702 -37.16779 -34.93421 -31.90726 -30.96859 -29.01004 -28.76977 -25.86482 -25.21159 -22.40828 -21.44533 -20.40007 -19.90584 -17.61943 -16.47407 -15.75461 -14.85324 -14.72498 -14.09636 -13.90069 -13.46375 -13.30702 -13.07529 -12.74003 -12.53814 -11.60161 -11.36779 -11.03760 -10.93164 -10.77549 -10.69275 -10.35558 -10.22813 -9.92671 -9.83634 -9.29077 -8.50857 -7.70812 -7.30804 -6.68367 -5.67242 -3.13814 1.60705 2.14416 3.02299 3.40050 3.42709 3.45867 3.47075 4.38049 4.58642 5.01420 5.19000 5.43508 5.51224 5.66299 5.78319 5.80661 5.86547 6.00134 6.19474 6.30303 6.43569 6.59069 6.72044 6.82457 7.01196 7.06441 7.12862 7.39553 7.44769 7.64956 7.77926 7.81389 7.85198 8.44572 9.28428 9.91586 10.40886 11.37208 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.030640 B = 0.007419 C = 0.006394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.624628 B = 3773.186397 C = 4378.121558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.593 5.593 3 C -0.251 4.251 4 H 0.065 0.935 5 C 0.002 3.998 6 N -0.908 5.908 7 Si 0.903 3.097 8 H -0.285 1.285 9 H -0.290 1.290 10 H -0.284 1.284 11 C 0.183 3.817 12 C -0.057 4.057 13 C -0.130 4.130 14 C -0.083 4.083 15 C -0.124 4.124 16 C -0.208 4.208 17 C 0.036 3.964 18 N -0.600 5.600 19 H 0.411 0.589 20 C 0.096 3.904 21 C -0.119 4.119 22 H 0.032 0.968 23 H 0.039 0.961 24 H -0.001 1.001 25 H 0.252 0.748 26 H 0.048 0.952 27 H 0.055 0.945 28 H 0.116 0.884 29 H 0.113 0.887 30 H 0.139 0.861 31 H 0.163 0.837 32 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.240 -9.440 -9.787 14.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.314 5.314 3 C -0.381 4.381 4 H 0.083 0.917 5 C -0.196 4.196 6 N -0.553 5.553 7 Si 0.733 3.267 8 H -0.212 1.212 9 H -0.216 1.216 10 H -0.210 1.210 11 C 0.056 3.944 12 C -0.062 4.062 13 C -0.150 4.150 14 C -0.102 4.102 15 C -0.128 4.128 16 C -0.233 4.233 17 C -0.090 4.090 18 N -0.204 5.204 19 H 0.247 0.753 20 C -0.010 4.010 21 C -0.141 4.141 22 H 0.050 0.950 23 H 0.057 0.943 24 H 0.018 0.982 25 H 0.062 0.938 26 H 0.066 0.934 27 H 0.074 0.926 28 H 0.134 0.866 29 H 0.131 0.869 30 H 0.157 0.843 31 H 0.180 0.820 32 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 6.206 -9.213 -9.673 14.730 hybrid contribution 0.717 1.358 -0.318 1.568 sum 6.923 -7.855 -9.991 14.473 Atomic orbital electron populations 1.20809 0.82513 0.95525 0.99354 1.43845 1.01795 1.00186 1.85610 1.19106 0.98153 0.85675 1.35158 0.91684 1.24984 0.97932 0.98358 0.98346 1.70063 1.19513 1.27199 1.38504 0.86365 0.78422 0.84039 0.77890 1.21213 1.21591 1.20991 1.19775 0.96786 0.88788 0.89052 1.20877 0.91894 0.93581 0.99805 1.20561 0.99417 1.00210 0.94797 1.20157 0.95513 1.00069 0.94411 1.19112 0.96266 1.02849 0.94570 1.21610 0.97165 1.07862 0.96704 1.21653 0.98852 0.98860 0.89599 1.41757 1.20266 1.46645 1.11707 0.75267 1.18347 0.89640 1.00639 0.92402 1.19902 0.99640 1.03197 0.91317 0.94990 0.94252 0.98221 0.93751 0.93394 0.92637 0.86593 0.86877 0.84307 0.81992 0.86643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.12 8.98 59.85 0.54 4.65 16 2 N -0.59 -15.25 2.90 -182.50 -0.53 -15.78 16 3 C -0.25 -7.03 9.65 -15.06 -0.15 -7.17 16 4 H 0.07 1.77 7.86 -52.49 -0.41 1.36 16 5 C 0.00 0.05 5.10 -17.43 -0.09 -0.04 16 6 N -0.91 -26.93 10.72 55.49 0.59 -26.33 16 7 Si 0.90 22.28 29.57 -169.99 -5.03 17.26 16 8 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 9 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 10 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 11 C 0.18 3.89 5.75 -5.19 -0.03 3.86 16 12 C -0.06 -1.11 5.46 -104.58 -0.57 -1.69 16 13 C -0.13 -2.34 9.62 -39.95 -0.38 -2.72 16 14 C -0.08 -1.38 10.05 -39.64 -0.40 -1.78 16 15 C -0.12 -2.10 6.37 -105.14 -0.67 -2.77 16 16 C -0.21 -2.88 11.08 -37.67 -0.42 -3.29 16 17 C 0.04 0.44 11.81 -16.73 -0.20 0.24 16 18 N -0.60 -8.13 6.07 -10.65 -0.06 -8.20 16 19 H 0.41 4.37 8.96 -40.82 -0.37 4.00 16 20 C 0.10 1.65 7.28 -83.99 -0.61 1.04 16 21 C -0.12 -2.24 9.71 -39.43 -0.38 -2.62 16 22 H 0.03 0.86 7.34 -51.92 -0.38 0.48 16 23 H 0.04 1.07 7.34 -51.93 -0.38 0.69 16 24 H 0.00 -0.02 8.00 -51.92 -0.42 -0.43 16 25 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 26 H 0.05 0.94 8.01 -51.93 -0.42 0.52 16 27 H 0.06 1.16 7.97 -51.93 -0.41 0.74 16 28 H 0.12 1.92 8.03 -52.49 -0.42 1.50 16 29 H 0.11 1.58 8.06 -52.48 -0.42 1.16 16 30 H 0.14 1.57 8.06 -52.49 -0.42 1.15 16 31 H 0.16 1.27 8.06 -52.49 -0.42 0.85 16 32 H 0.12 2.11 8.06 -52.48 -0.42 1.69 16 LS Contribution 275.52 15.07 4.15 4.15 Total: -1.00 -32.14 275.52 -8.27 -40.41 By element: Atomic # 1 Polarization: 4.81 SS G_CDS: -4.03 Total: 0.78 kcal Atomic # 6 Polarization: -8.92 SS G_CDS: -3.36 Total: -12.28 kcal Atomic # 7 Polarization: -50.31 SS G_CDS: 0.00 Total: -50.31 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.03 Total: 17.26 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -32.14 -8.27 -40.41 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000862225639.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.223 kcal (2) G-P(sol) polarization free energy of solvation -32.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds