Wall clock time and date at job start Sun Mar 29 2020 21:46:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36933 * 120.00038 * 2 1 4 4 H 1.07997 * 119.99783 * 203.04012 * 3 2 1 5 5 C 1.38810 * 120.00291 * 23.03896 * 3 2 1 6 6 N 1.31622 * 119.99541 * 13.06089 * 5 3 2 7 7 Si 1.86795 * 120.00463 * 193.05780 * 5 3 2 8 8 H 1.48507 * 109.46913 * 59.99946 * 7 5 3 9 9 H 1.48493 * 109.47474 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47008 * 300.00440 * 7 5 3 11 11 C 1.46500 * 119.99791 * 179.97438 * 2 1 3 12 12 C 1.50700 * 109.47102 * 89.99963 * 11 2 1 13 13 C 1.38828 * 119.67110 * 270.25145 * 12 11 2 14 14 C 1.36624 * 120.52934 * 180.25644 * 13 12 11 15 15 C 1.39633 * 119.76588 * 359.74699 * 14 13 12 16 16 C 1.46487 * 134.03429 * 180.02562 * 15 14 13 17 17 C 1.34241 * 106.99501 * 179.97438 * 16 15 14 18 18 N 1.36829 * 109.93384 * 359.97438 * 17 16 15 19 19 H 0.96991 * 125.07039 * 179.97438 * 18 17 16 20 20 C 1.37691 * 109.86989 * 0.02562 * 18 17 16 21 21 C 1.37753 * 119.66542 * 90.00065 * 12 11 2 22 22 H 1.09010 * 109.47346 * 275.12895 * 1 2 3 23 23 H 1.08995 * 109.47390 * 35.13067 * 1 2 3 24 24 H 1.09008 * 109.47404 * 155.13038 * 1 2 3 25 25 H 0.97006 * 119.99694 * 179.97438 * 6 5 3 26 26 H 1.09000 * 109.47343 * 330.00069 * 11 2 1 27 27 H 1.09001 * 109.47411 * 209.99986 * 11 2 1 28 28 H 1.08002 * 119.73382 * 359.97438 * 13 12 11 29 29 H 1.08007 * 120.11823 * 179.77374 * 14 13 12 30 30 H 1.08001 * 126.50583 * 0.02562 * 16 15 14 31 31 H 1.08000 * 125.03524 * 179.97438 * 17 16 15 32 32 H 1.08008 * 120.11165 * 0.02562 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1650 1.2231 -0.3661 5 6 1.5387 2.3401 0.4704 6 7 0.4131 2.2595 1.1478 7 14 2.3140 4.0076 0.1423 8 1 2.4149 4.2268 -1.3230 9 1 1.4727 5.0721 0.7458 10 1 3.6712 4.0494 0.7437 11 6 2.1974 -1.2688 0.0006 12 6 2.4486 -1.7044 -1.4201 13 6 1.5160 -2.5019 -2.0694 14 6 1.7283 -2.9113 -3.3554 15 6 2.8900 -2.5205 -4.0244 16 6 3.4243 -2.7673 -5.3659 17 6 4.6000 -2.1242 -5.4443 18 7 4.8620 -1.4852 -4.2631 19 1 5.6533 -0.9551 -4.0797 20 6 3.8354 -1.7078 -3.3729 21 6 3.5988 -1.3031 -2.0630 22 1 -0.3634 0.0919 1.0236 23 1 -0.3634 0.8404 -0.5913 24 1 -0.3634 -0.9324 -0.4322 25 1 -0.0137 3.0661 1.4769 26 1 1.6084 -2.0282 0.5147 27 1 3.1499 -1.1383 0.5143 28 1 0.6175 -2.8048 -1.5522 29 1 1.0000 -3.5346 -3.8530 30 1 2.9601 -3.3545 -6.1444 31 1 5.2438 -2.1127 -6.3114 32 1 4.3167 -0.6797 -1.5506 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000862225639.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:37 Heat of formation + Delta-G solvation = 61.928628 kcal Electronic energy + Delta-G solvation = -15399.899627 eV Core-core repulsion = 12939.754283 eV Total energy + Delta-G solvation = -2460.145344 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.96681 -38.63962 -36.71505 -33.58779 -32.53703 -30.41546 -30.09056 -27.91362 -26.86580 -23.83239 -23.13220 -21.56972 -21.30217 -19.00538 -18.33627 -17.06723 -16.82813 -16.11659 -15.54726 -15.38266 -15.09435 -14.75562 -14.60223 -14.21925 -13.86236 -13.31685 -12.89698 -12.86215 -12.62502 -12.52227 -12.32917 -12.11107 -11.94149 -11.89450 -11.64299 -10.64848 -10.50786 -9.01303 -8.77347 -8.48125 -7.80865 -5.30335 0.34104 0.80421 1.43136 1.46278 1.52664 1.93349 2.37509 2.50746 3.05599 3.31392 3.90186 3.92644 4.11434 4.21878 4.36074 4.52614 4.59450 4.69276 4.86006 4.91204 4.99834 5.04682 5.20171 5.27417 5.35483 5.62148 5.69880 5.71981 5.84213 5.94523 5.99267 6.33390 6.37681 6.81025 7.15779 7.87312 8.32020 9.21387 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.030640 B = 0.007419 C = 0.006394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.624628 B = 3773.186397 C = 4378.121558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.178 3.822 2 N -0.609 5.609 3 C -0.258 4.258 4 H 0.067 0.933 5 C -0.054 4.054 6 N -0.939 5.939 7 Si 0.966 3.034 8 H -0.284 1.284 9 H -0.292 1.292 10 H -0.273 1.273 11 C 0.185 3.815 12 C -0.079 4.079 13 C -0.143 4.143 14 C -0.084 4.084 15 C -0.140 4.140 16 C -0.229 4.229 17 C 0.059 3.941 18 N -0.595 5.595 19 H 0.425 0.575 20 C 0.074 3.926 21 C -0.131 4.131 22 H 0.008 0.992 23 H 0.010 0.990 24 H 0.031 0.969 25 H 0.248 0.752 26 H 0.061 0.939 27 H 0.051 0.949 28 H 0.124 0.876 29 H 0.139 0.861 30 H 0.164 0.836 31 H 0.212 0.788 32 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.616 -10.136 -12.167 17.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.332 5.332 3 C -0.388 4.388 4 H 0.084 0.916 5 C -0.249 4.249 6 N -0.586 5.586 7 Si 0.794 3.206 8 H -0.210 1.210 9 H -0.218 1.218 10 H -0.199 1.199 11 C 0.060 3.940 12 C -0.083 4.083 13 C -0.163 4.163 14 C -0.103 4.103 15 C -0.145 4.145 16 C -0.254 4.254 17 C -0.067 4.067 18 N -0.199 5.199 19 H 0.263 0.737 20 C -0.034 4.034 21 C -0.153 4.153 22 H 0.027 0.973 23 H 0.028 0.972 24 H 0.049 0.951 25 H 0.057 0.943 26 H 0.080 0.920 27 H 0.069 0.931 28 H 0.142 0.858 29 H 0.157 0.843 30 H 0.182 0.818 31 H 0.229 0.771 32 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 7.626 -9.938 -12.068 17.394 hybrid contribution 0.388 1.462 0.306 1.543 sum 8.014 -8.476 -11.762 16.566 Atomic orbital electron populations 1.20537 0.82760 0.95811 0.97586 1.44064 1.01995 1.01207 1.85901 1.19422 0.98339 0.86847 1.34176 0.91569 1.25757 0.98736 1.01707 0.98705 1.70226 1.20903 1.27598 1.39853 0.85360 0.77892 0.79761 0.77566 1.21002 1.21804 1.19850 1.19839 0.96227 0.87295 0.90681 1.20603 0.93310 0.95657 0.98764 1.20670 0.99476 1.00515 0.95640 1.20460 0.96105 0.99778 0.93948 1.19637 0.96185 1.02427 0.96225 1.21987 0.98076 1.09372 0.95970 1.22470 0.98514 0.95960 0.89748 1.41896 1.19913 1.46514 1.11593 0.73713 1.18402 0.91254 1.01325 0.92378 1.19917 0.99519 1.03407 0.92427 0.97333 0.97157 0.95051 0.94283 0.92045 0.93081 0.85788 0.84282 0.81828 0.77106 0.87316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.20 8.98 127.77 1.15 10.35 16 2 N -0.61 -31.86 2.90 -731.30 -2.12 -33.99 16 3 C -0.26 -14.62 9.65 84.03 0.81 -13.81 16 4 H 0.07 3.65 7.86 -2.91 -0.02 3.63 16 5 C -0.05 -3.14 5.10 84.86 0.43 -2.70 16 6 N -0.94 -57.08 10.72 21.65 0.23 -56.85 16 7 Si 0.97 46.32 29.57 68.60 2.03 48.35 16 8 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 9 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 10 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 11 C 0.19 7.96 5.75 85.63 0.49 8.45 16 12 C -0.08 -3.11 5.46 -19.84 -0.11 -3.22 16 13 C -0.14 -5.05 9.62 22.03 0.21 -4.84 16 14 C -0.08 -2.68 10.05 22.23 0.22 -2.46 16 15 C -0.14 -4.46 6.37 -20.20 -0.13 -4.59 16 16 C -0.23 -5.51 11.08 23.51 0.26 -5.25 16 17 C 0.06 1.16 11.81 83.00 0.98 2.14 16 18 N -0.60 -14.42 6.07 -187.61 -1.14 -15.56 16 19 H 0.42 7.84 8.96 -92.71 -0.83 7.01 16 20 C 0.07 2.44 7.28 39.03 0.28 2.72 16 21 C -0.13 -4.93 9.71 22.37 0.22 -4.71 16 22 H 0.01 0.47 7.34 -2.38 -0.02 0.45 16 23 H 0.01 0.55 7.34 -2.39 -0.02 0.53 16 24 H 0.03 1.38 8.00 -2.38 -0.02 1.36 16 25 H 0.25 14.64 8.31 -92.70 -0.77 13.87 16 26 H 0.06 2.41 8.01 -2.39 -0.02 2.39 16 27 H 0.05 2.18 7.97 -2.39 -0.02 2.16 16 28 H 0.12 4.01 8.03 -2.91 -0.02 3.99 16 29 H 0.14 3.55 8.06 -2.91 -0.02 3.53 16 30 H 0.16 3.01 8.06 -2.91 -0.02 2.99 16 31 H 0.21 1.99 8.06 -2.91 -0.02 1.96 16 32 H 0.11 4.06 8.06 -2.91 -0.02 4.04 16 Total: -1.00 -69.88 275.52 4.11 -65.78 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: 0.29 Total: 10.20 kcal Atomic # 6 Polarization: -22.75 SS G_CDS: 4.82 Total: -17.92 kcal Atomic # 7 Polarization: -103.37 SS G_CDS: -3.03 Total: -106.40 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 2.03 Total: 48.35 kcal Total: -69.88 4.11 -65.78 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000862225639.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.704 kcal (2) G-P(sol) polarization free energy of solvation -69.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.776 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds