Wall clock time and date at job start Sun Mar 29 2020 21:33:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86794 * 119.99980 * 2 1 4 4 H 1.48503 * 109.47241 * 269.99809 * 3 2 1 5 5 H 1.48497 * 109.47231 * 29.99877 * 3 2 1 6 6 H 1.48508 * 109.47072 * 149.99857 * 3 2 1 7 7 C 1.38955 * 120.00132 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00332 * 179.97438 * 7 2 1 9 9 N 1.37099 * 119.99738 * 0.02562 * 7 2 1 10 10 C 1.34777 * 120.00043 * 180.02562 * 9 7 2 11 11 O 1.21294 * 119.99825 * 359.97438 * 10 9 7 12 12 C 1.50697 * 120.00218 * 179.97438 * 10 9 7 13 13 N 1.46900 * 109.47237 * 173.72893 * 12 10 9 14 14 C 1.46845 * 111.00126 * 169.39888 * 13 12 10 15 15 C 1.53038 * 109.52423 * 185.84163 * 14 13 12 16 16 C 1.53125 * 109.27545 * 300.81993 * 15 14 13 17 17 F 1.39899 * 109.57128 * 177.58756 * 16 15 14 18 18 C 1.53119 * 109.16101 * 57.65935 * 16 15 14 19 19 C 1.46852 * 111.00118 * 293.61170 * 13 12 10 20 20 H 0.96995 * 120.00108 * 0.02562 * 1 2 3 21 21 H 0.97002 * 120.00153 * 359.97438 * 9 7 2 22 22 H 1.08996 * 109.46989 * 293.72634 * 12 10 9 23 23 H 1.08994 * 109.47105 * 53.72813 * 12 10 9 24 24 H 1.08998 * 109.46555 * 305.85433 * 14 13 12 25 25 H 1.09004 * 109.46392 * 65.82754 * 14 13 12 26 26 H 1.08998 * 109.50374 * 180.88473 * 15 14 13 27 27 H 1.09001 * 109.50604 * 60.76106 * 15 14 13 28 28 H 1.08994 * 109.52529 * 297.74668 * 16 15 14 29 29 H 1.08998 * 109.50519 * 182.40701 * 18 16 15 30 30 H 1.08998 * 109.50523 * 62.27926 * 18 16 15 31 31 H 1.08994 * 109.45963 * 294.17267 * 19 13 12 32 32 H 1.09003 * 109.46062 * 54.15362 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4456 2.6526 0.7000 6 1 3.5457 1.4401 0.7001 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2034 0.0001 9 7 1.3234 -2.3907 0.0005 10 6 1.9973 -3.5579 0.0016 11 8 3.2102 -3.5579 0.0021 12 6 1.2438 -4.8630 0.0022 13 7 2.1913 -5.9755 -0.1480 14 6 1.5325 -7.2646 0.0982 15 6 2.5756 -8.3843 0.0769 16 6 3.2740 -8.3987 -1.2857 17 9 4.2668 -9.3843 -1.2931 18 6 3.9106 -7.0293 -1.5387 19 6 2.8288 -5.9489 -1.4706 20 1 -0.4850 0.8400 -0.0004 21 1 0.3534 -2.3907 0.0005 22 1 0.7037 -4.9702 0.9428 23 1 0.5359 -4.8742 -0.8266 24 1 1.0434 -7.2425 1.0720 25 1 0.7887 -7.4464 -0.6777 26 1 2.0841 -9.3427 0.2440 27 1 3.3121 -8.2105 0.8615 28 1 2.5441 -8.6111 -2.0669 29 1 4.3728 -7.0196 -2.5258 30 1 4.6680 -6.8342 -0.7796 31 1 2.0789 -6.1369 -2.2390 32 1 3.2813 -4.9712 -1.6361 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000880242453.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:33:43 Heat of formation + Delta-G solvation = -91.186399 kcal Electronic energy + Delta-G solvation = -16194.828429 eV Core-core repulsion = 13297.274294 eV Total energy + Delta-G solvation = -2897.554135 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.117 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -47.59126 -39.06224 -37.40074 -33.96162 -32.64732 -31.20440 -30.84143 -27.23351 -24.56507 -23.21574 -22.63321 -19.98518 -19.19132 -17.86895 -16.32420 -16.07887 -15.77148 -15.10272 -14.91902 -14.74083 -14.33965 -13.77557 -13.66745 -13.54475 -12.53742 -12.44492 -12.25531 -11.86682 -11.59476 -11.44056 -11.18283 -11.17466 -10.98694 -10.40280 -10.39805 -10.21956 -10.17956 -9.47415 -8.46388 -7.98412 -7.88987 -6.42143 -3.82909 3.17546 3.26383 3.32356 3.89984 3.93370 4.22809 4.52052 4.63206 4.66885 4.92831 5.01959 5.21836 5.25039 5.37113 5.53611 5.57723 5.67626 5.76905 5.85549 5.94939 5.98092 6.09199 6.27087 6.35838 6.38767 7.23397 7.35711 7.54906 8.06151 8.61609 9.17948 9.54237 10.06114 10.75665 Molecular weight = 230.12amu Principal moments of inertia in cm(-1) A = 0.063349 B = 0.005217 C = 0.004960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 441.888520 B = 5365.558859 C = 5644.157937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.930 3.070 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.269 1.269 7 C -0.299 4.299 8 H 0.103 0.897 9 N -0.565 5.565 10 C 0.442 3.558 11 O -0.576 6.576 12 C 0.047 3.953 13 N -0.517 5.517 14 C 0.057 3.943 15 C -0.139 4.139 16 C 0.088 3.912 17 F -0.218 7.218 18 C -0.138 4.138 19 C 0.058 3.942 20 H 0.271 0.729 21 H 0.392 0.608 22 H 0.090 0.910 23 H 0.047 0.953 24 H 0.081 0.919 25 H 0.032 0.968 26 H 0.074 0.926 27 H 0.084 0.916 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.085 0.915 31 H 0.026 0.974 32 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.235 -13.081 -2.083 13.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.179 4.179 3 Si 0.757 3.243 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.428 4.428 8 H 0.121 0.879 9 N -0.202 5.202 10 C 0.228 3.772 11 O -0.460 6.460 12 C -0.084 4.084 13 N -0.242 5.242 14 C -0.071 4.071 15 C -0.178 4.178 16 C 0.052 3.948 17 F -0.199 7.199 18 C -0.176 4.176 19 C -0.070 4.070 20 H 0.081 0.919 21 H 0.225 0.775 22 H 0.108 0.892 23 H 0.065 0.935 24 H 0.099 0.901 25 H 0.051 0.949 26 H 0.093 0.907 27 H 0.103 0.897 28 H 0.095 0.905 29 H 0.093 0.907 30 H 0.104 0.896 31 H 0.044 0.956 32 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 0.844 -12.878 -1.726 13.020 hybrid contribution -0.916 0.709 -0.581 1.296 sum -0.072 -12.168 -2.307 12.385 Atomic orbital electron populations 1.69610 1.05949 1.28151 1.50682 1.25255 0.95620 0.99708 0.97336 0.85861 0.79264 0.80824 0.78366 1.20439 1.20936 1.19396 1.19700 0.93362 0.82212 1.47553 0.87912 1.41884 1.09187 1.04602 1.64503 1.19749 0.88448 0.84525 0.84519 1.90509 1.13634 1.86924 1.54937 1.21845 0.93644 0.91187 1.01772 1.61498 1.31183 1.01026 1.30489 1.22031 0.94754 0.88928 1.01371 1.22154 0.99548 0.98741 0.97310 1.21698 0.87872 0.86302 0.98910 1.92788 1.64684 1.64570 1.97864 1.22148 0.99588 0.92657 1.03205 1.22124 0.95570 1.01103 0.88222 0.91886 0.77511 0.89160 0.93485 0.90054 0.94936 0.90689 0.89724 0.90540 0.90725 0.89611 0.95588 0.87752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.42 13.05 55.50 0.72 -23.69 16 2 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 3 Si 0.93 20.95 29.55 -169.99 -5.02 15.92 16 4 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 5 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 6 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 7 C -0.30 -8.26 9.68 -14.93 -0.14 -8.41 16 8 H 0.10 2.98 7.16 -52.49 -0.38 2.61 16 9 N -0.56 -14.17 5.29 -10.96 -0.06 -14.23 16 10 C 0.44 10.30 7.31 -10.99 -0.08 10.22 16 11 O -0.58 -15.37 14.29 5.55 0.08 -15.29 16 12 C 0.05 0.82 5.45 -4.98 -0.03 0.79 16 13 N -0.52 -8.47 4.35 -236.12 -1.03 -9.49 16 14 C 0.06 0.71 5.46 -3.83 -0.02 0.69 16 15 C -0.14 -1.61 5.83 -26.65 -0.16 -1.77 16 16 C 0.09 1.08 3.94 -26.61 -0.10 0.97 16 17 F -0.22 -2.99 17.09 2.25 0.04 -2.95 16 18 C -0.14 -1.90 5.83 -26.65 -0.16 -2.06 16 19 C 0.06 0.91 5.12 -3.83 -0.02 0.89 16 20 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 21 H 0.39 9.39 7.90 -40.82 -0.32 9.07 16 22 H 0.09 1.42 7.98 -51.93 -0.41 1.01 16 23 H 0.05 0.75 8.12 -51.93 -0.42 0.33 16 24 H 0.08 0.93 8.01 -51.93 -0.42 0.51 16 25 H 0.03 0.37 8.14 -51.93 -0.42 -0.06 16 26 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 31 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.10 2.02 6.06 -51.93 -0.31 1.71 16 LS Contribution 269.58 15.07 4.06 4.06 Total: -1.00 -30.34 269.58 -6.37 -36.70 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: -4.36 Total: 7.12 kcal Atomic # 6 Polarization: 2.65 SS G_CDS: -0.80 Total: 1.84 kcal Atomic # 7 Polarization: -47.05 SS G_CDS: -0.36 Total: -47.41 kcal Atomic # 8 Polarization: -15.37 SS G_CDS: 0.08 Total: -15.29 kcal Atomic # 9 Polarization: -2.99 SS G_CDS: 0.04 Total: -2.95 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -30.34 -6.37 -36.70 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880242453.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.482 kcal (2) G-P(sol) polarization free energy of solvation -30.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds