Wall clock time and date at job start Sun Mar 29 2020 21:33:42
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31412 * 1
3 3 Si 1.86794 * 119.99980 * 2 1
4 4 H 1.48503 * 109.47241 * 269.99809 * 3 2 1
5 5 H 1.48497 * 109.47231 * 29.99877 * 3 2 1
6 6 H 1.48508 * 109.47072 * 149.99857 * 3 2 1
7 7 C 1.38955 * 120.00132 * 179.97438 * 2 1 3
8 8 H 1.07997 * 120.00332 * 179.97438 * 7 2 1
9 9 N 1.37099 * 119.99738 * 0.02562 * 7 2 1
10 10 C 1.34777 * 120.00043 * 180.02562 * 9 7 2
11 11 O 1.21294 * 119.99825 * 359.97438 * 10 9 7
12 12 C 1.50697 * 120.00218 * 179.97438 * 10 9 7
13 13 N 1.46900 * 109.47237 * 173.72893 * 12 10 9
14 14 C 1.46845 * 111.00126 * 169.39888 * 13 12 10
15 15 C 1.53038 * 109.52423 * 185.84163 * 14 13 12
16 16 C 1.53125 * 109.27545 * 300.81993 * 15 14 13
17 17 F 1.39899 * 109.57128 * 177.58756 * 16 15 14
18 18 C 1.53119 * 109.16101 * 57.65935 * 16 15 14
19 19 C 1.46852 * 111.00118 * 293.61170 * 13 12 10
20 20 H 0.96995 * 120.00108 * 0.02562 * 1 2 3
21 21 H 0.97002 * 120.00153 * 359.97438 * 9 7 2
22 22 H 1.08996 * 109.46989 * 293.72634 * 12 10 9
23 23 H 1.08994 * 109.47105 * 53.72813 * 12 10 9
24 24 H 1.08998 * 109.46555 * 305.85433 * 14 13 12
25 25 H 1.09004 * 109.46392 * 65.82754 * 14 13 12
26 26 H 1.08998 * 109.50374 * 180.88473 * 15 14 13
27 27 H 1.09001 * 109.50604 * 60.76106 * 15 14 13
28 28 H 1.08994 * 109.52529 * 297.74668 * 16 15 14
29 29 H 1.08998 * 109.50519 * 182.40701 * 18 16 15
30 30 H 1.08998 * 109.50523 * 62.27926 * 18 16 15
31 31 H 1.08994 * 109.45963 * 294.17267 * 19 13 12
32 32 H 1.09003 * 109.46062 * 54.15362 * 19 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3141 0.0000 0.0000
3 14 2.2481 1.6177 0.0000
4 1 2.4956 2.0464 -1.4001
5 1 1.4456 2.6526 0.7000
6 1 3.5457 1.4401 0.7001
7 6 2.0089 -1.2034 0.0005
8 1 3.0889 -1.2034 0.0001
9 7 1.3234 -2.3907 0.0005
10 6 1.9973 -3.5579 0.0016
11 8 3.2102 -3.5579 0.0021
12 6 1.2438 -4.8630 0.0022
13 7 2.1913 -5.9755 -0.1480
14 6 1.5325 -7.2646 0.0982
15 6 2.5756 -8.3843 0.0769
16 6 3.2740 -8.3987 -1.2857
17 9 4.2668 -9.3843 -1.2931
18 6 3.9106 -7.0293 -1.5387
19 6 2.8288 -5.9489 -1.4706
20 1 -0.4850 0.8400 -0.0004
21 1 0.3534 -2.3907 0.0005
22 1 0.7037 -4.9702 0.9428
23 1 0.5359 -4.8742 -0.8266
24 1 1.0434 -7.2425 1.0720
25 1 0.7887 -7.4464 -0.6777
26 1 2.0841 -9.3427 0.2440
27 1 3.3121 -8.2105 0.8615
28 1 2.5441 -8.6111 -2.0669
29 1 4.3728 -7.0196 -2.5258
30 1 4.6680 -6.8342 -0.7796
31 1 2.0789 -6.1369 -2.2390
32 1 3.2813 -4.9712 -1.6361
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000880242453.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 21:33:42
Heat of formation + Delta-G solvation = -112.778564 kcal
Electronic energy + Delta-G solvation = -16195.764736 eV
Core-core repulsion = 13297.274294 eV
Total energy + Delta-G solvation = -2898.490441 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 230.117 amu
Computer time = 0.33 seconds
Orbital eigenvalues (eV)
-48.60912 -40.56893 -38.94095 -35.93746 -33.92211 -33.18297 -31.90726 -28.76036
-26.37008 -24.30538 -23.85372 -21.10901 -20.92979 -19.86705 -17.79039 -17.31959
-16.93912 -16.58358 -16.39305 -15.95010 -15.88941 -15.33309 -15.24979 -14.89629
-14.06849 -13.61149 -13.49740 -13.39846 -13.12704 -12.90803 -12.64503 -12.41415
-12.33196 -12.23451 -12.11481 -11.52323 -11.37237 -11.20634 -10.27699 -9.98654
-9.19379 -8.45635 -5.94000 1.38328 1.42207 1.54758 2.07545 2.29170
2.74818 3.21540 3.37409 3.57517 3.63296 3.67840 3.99964 4.13798
4.26928 4.34727 4.44898 4.50126 4.55911 4.68788 4.78983 4.88521
4.94576 5.08699 5.11454 5.31018 5.41995 5.89109 6.08677 6.23498
6.62586 7.14748 7.58652 8.14907 8.71840
Molecular weight = 230.12amu
Principal moments of inertia in cm(-1)
A = 0.063349 B = 0.005217 C = 0.004960
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 441.888520 B = 5365.558859 C = 5644.157937
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.921 5.921
2 C -0.012 4.012
3 Si 0.991 3.009
4 H -0.271 1.271
5 H -0.271 1.271
6 H -0.274 1.274
7 C -0.332 4.332
8 H 0.077 0.923
9 N -0.575 5.575
10 C 0.439 3.561
11 O -0.616 6.616
12 C 0.059 3.941
13 N -0.541 5.541
14 C 0.058 3.942
15 C -0.136 4.136
16 C 0.090 3.910
17 F -0.227 7.227
18 C -0.134 4.134
19 C 0.061 3.939
20 H 0.277 0.723
21 H 0.396 0.604
22 H 0.113 0.887
23 H 0.070 0.930
24 H 0.095 0.905
25 H 0.055 0.945
26 H 0.104 0.896
27 H 0.067 0.933
28 H 0.103 0.897
29 H 0.085 0.915
30 H 0.061 0.939
31 H 0.046 0.954
32 H 0.060 0.940
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.434 -14.153 -2.296 14.410
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.562 5.562
2 C -0.212 4.212
3 Si 0.815 3.185
4 H -0.197 1.197
5 H -0.195 1.195
6 H -0.199 1.199
7 C -0.462 4.462
8 H 0.095 0.905
9 N -0.213 5.213
10 C 0.227 3.773
11 O -0.501 6.501
12 C -0.072 4.072
13 N -0.267 5.267
14 C -0.069 4.069
15 C -0.174 4.174
16 C 0.054 3.946
17 F -0.208 7.208
18 C -0.173 4.173
19 C -0.067 4.067
20 H 0.087 0.913
21 H 0.230 0.770
22 H 0.131 0.869
23 H 0.088 0.912
24 H 0.113 0.887
25 H 0.073 0.927
26 H 0.122 0.878
27 H 0.086 0.914
28 H 0.121 0.879
29 H 0.104 0.896
30 H 0.079 0.921
31 H 0.064 0.936
32 H 0.079 0.921
Dipole moment (debyes) X Y Z Total
from point charges -0.379 -13.973 -1.939 14.112
hybrid contribution -0.515 0.989 -0.517 1.229
sum -0.894 -12.985 -2.456 13.245
Atomic orbital electron populations
1.69666 1.06789 1.29242 1.50512 1.25999 0.96511 1.02297 0.96353
0.84952 0.77880 0.77034 0.78618 1.19657 1.19546 1.19907 1.19641
0.92633 0.84067 1.49819 0.90460 1.41949 1.09307 1.04689 1.65348
1.20849 0.88337 0.86000 0.82127 1.90486 1.15793 1.87834 1.56036
1.21716 0.93282 0.88293 1.03874 1.61441 1.31930 1.02460 1.30855
1.22144 0.95169 0.86732 1.02863 1.22152 0.99110 0.99821 0.96274
1.21770 0.87806 0.84715 1.00263 1.92774 1.65298 1.64729 1.97959
1.22085 0.98587 0.93502 1.03087 1.21976 0.96371 0.99453 0.88897
0.91333 0.77005 0.86862 0.91209 0.88684 0.92681 0.87799 0.91406
0.87913 0.89626 0.92058 0.93554 0.92147
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.92 -49.51 13.05 21.66 0.28 -49.22 16
2 C -0.01 -0.64 5.50 84.93 0.47 -0.17 16
3 Si 0.99 42.95 29.55 68.60 2.03 44.98 16
4 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16
5 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16
6 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16
7 C -0.33 -18.84 9.68 84.04 0.81 -18.03 16
8 H 0.08 4.70 7.16 -2.91 -0.02 4.67 16
9 N -0.58 -29.34 5.29 -306.98 -1.62 -30.96 16
10 C 0.44 20.76 7.31 87.66 0.64 21.40 16
11 O -0.62 -34.04 14.29 -3.07 -0.04 -34.08 16
12 C 0.06 1.99 5.45 85.56 0.47 2.45 16
13 N -0.54 -16.91 4.35 -900.94 -3.92 -20.83 16
14 C 0.06 1.25 5.46 86.33 0.47 1.72 16
15 C -0.14 -2.73 5.83 30.65 0.18 -2.56 16
16 C 0.09 1.98 3.94 30.68 0.12 2.10 16
17 F -0.23 -5.75 17.09 44.97 0.77 -4.98 16
18 C -0.13 -3.61 5.83 30.65 0.18 -3.43 16
19 C 0.06 1.90 5.12 86.33 0.44 2.34 16
20 H 0.28 13.95 8.31 -92.71 -0.77 13.18 16
21 H 0.40 19.10 7.90 -92.71 -0.73 18.37 16
22 H 0.11 3.29 7.98 -2.39 -0.02 3.27 16
23 H 0.07 2.04 8.12 -2.39 -0.02 2.02 16
24 H 0.09 1.80 8.01 -2.39 -0.02 1.78 16
25 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16
26 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16
27 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16
28 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16
29 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16
30 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16
31 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16
32 H 0.06 2.42 6.06 -2.39 -0.01 2.40 16
Total: -1.00 -66.64 269.58 1.67 -64.98
By element:
Atomic # 1 Polarization: 23.92 SS G_CDS: 0.39 Total: 24.31 kcal
Atomic # 6 Polarization: 2.03 SS G_CDS: 3.78 Total: 5.81 kcal
Atomic # 7 Polarization: -95.76 SS G_CDS: -5.26 Total: -101.01 kcal
Atomic # 8 Polarization: -34.04 SS G_CDS: -0.04 Total: -34.08 kcal
Atomic # 9 Polarization: -5.75 SS G_CDS: 0.77 Total: -4.98 kcal
Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal
Total: -66.64 1.67 -64.98 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000880242453.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -47.800 kcal
(2) G-P(sol) polarization free energy of solvation -66.644 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.444 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.665 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.979 kcal
(6) G-S(sol) free energy of system = (1) + (5) -112.779 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.34 seconds