Wall clock time and date at job start Sun Mar 29 2020 21:33:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86794 * 119.99980 * 2 1 4 4 H 1.48503 * 109.47241 * 269.99809 * 3 2 1 5 5 H 1.48497 * 109.47231 * 29.99877 * 3 2 1 6 6 H 1.48508 * 109.47072 * 149.99857 * 3 2 1 7 7 C 1.38955 * 120.00132 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00332 * 179.97438 * 7 2 1 9 9 N 1.37099 * 119.99738 * 0.02562 * 7 2 1 10 10 C 1.34777 * 120.00043 * 180.02562 * 9 7 2 11 11 O 1.21294 * 119.99825 * 359.97438 * 10 9 7 12 12 C 1.50697 * 120.00218 * 179.97438 * 10 9 7 13 13 N 1.46900 * 109.47237 * 173.72893 * 12 10 9 14 14 C 1.46845 * 111.00126 * 169.39888 * 13 12 10 15 15 C 1.53038 * 109.52423 * 185.84163 * 14 13 12 16 16 C 1.53125 * 109.27545 * 300.81993 * 15 14 13 17 17 F 1.39899 * 109.57128 * 177.58756 * 16 15 14 18 18 C 1.53119 * 109.16101 * 57.65935 * 16 15 14 19 19 C 1.46852 * 111.00118 * 293.61170 * 13 12 10 20 20 H 0.96995 * 120.00108 * 0.02562 * 1 2 3 21 21 H 0.97002 * 120.00153 * 359.97438 * 9 7 2 22 22 H 1.08996 * 109.46989 * 293.72634 * 12 10 9 23 23 H 1.08994 * 109.47105 * 53.72813 * 12 10 9 24 24 H 1.08998 * 109.46555 * 305.85433 * 14 13 12 25 25 H 1.09004 * 109.46392 * 65.82754 * 14 13 12 26 26 H 1.08998 * 109.50374 * 180.88473 * 15 14 13 27 27 H 1.09001 * 109.50604 * 60.76106 * 15 14 13 28 28 H 1.08994 * 109.52529 * 297.74668 * 16 15 14 29 29 H 1.08998 * 109.50519 * 182.40701 * 18 16 15 30 30 H 1.08998 * 109.50523 * 62.27926 * 18 16 15 31 31 H 1.08994 * 109.45963 * 294.17267 * 19 13 12 32 32 H 1.09003 * 109.46062 * 54.15362 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4456 2.6526 0.7000 6 1 3.5457 1.4401 0.7001 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2034 0.0001 9 7 1.3234 -2.3907 0.0005 10 6 1.9973 -3.5579 0.0016 11 8 3.2102 -3.5579 0.0021 12 6 1.2438 -4.8630 0.0022 13 7 2.1913 -5.9755 -0.1480 14 6 1.5325 -7.2646 0.0982 15 6 2.5756 -8.3843 0.0769 16 6 3.2740 -8.3987 -1.2857 17 9 4.2668 -9.3843 -1.2931 18 6 3.9106 -7.0293 -1.5387 19 6 2.8288 -5.9489 -1.4706 20 1 -0.4850 0.8400 -0.0004 21 1 0.3534 -2.3907 0.0005 22 1 0.7037 -4.9702 0.9428 23 1 0.5359 -4.8742 -0.8266 24 1 1.0434 -7.2425 1.0720 25 1 0.7887 -7.4464 -0.6777 26 1 2.0841 -9.3427 0.2440 27 1 3.3121 -8.2105 0.8615 28 1 2.5441 -8.6111 -2.0669 29 1 4.3728 -7.0196 -2.5258 30 1 4.6680 -6.8342 -0.7796 31 1 2.0789 -6.1369 -2.2390 32 1 3.2813 -4.9712 -1.6361 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880242453.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:33:42 Heat of formation + Delta-G solvation = -112.778564 kcal Electronic energy + Delta-G solvation = -16195.764736 eV Core-core repulsion = 13297.274294 eV Total energy + Delta-G solvation = -2898.490441 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.117 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -48.60912 -40.56893 -38.94095 -35.93746 -33.92211 -33.18297 -31.90726 -28.76036 -26.37008 -24.30538 -23.85372 -21.10901 -20.92979 -19.86705 -17.79039 -17.31959 -16.93912 -16.58358 -16.39305 -15.95010 -15.88941 -15.33309 -15.24979 -14.89629 -14.06849 -13.61149 -13.49740 -13.39846 -13.12704 -12.90803 -12.64503 -12.41415 -12.33196 -12.23451 -12.11481 -11.52323 -11.37237 -11.20634 -10.27699 -9.98654 -9.19379 -8.45635 -5.94000 1.38328 1.42207 1.54758 2.07545 2.29170 2.74818 3.21540 3.37409 3.57517 3.63296 3.67840 3.99964 4.13798 4.26928 4.34727 4.44898 4.50126 4.55911 4.68788 4.78983 4.88521 4.94576 5.08699 5.11454 5.31018 5.41995 5.89109 6.08677 6.23498 6.62586 7.14748 7.58652 8.14907 8.71840 Molecular weight = 230.12amu Principal moments of inertia in cm(-1) A = 0.063349 B = 0.005217 C = 0.004960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 441.888520 B = 5365.558859 C = 5644.157937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.012 4.012 3 Si 0.991 3.009 4 H -0.271 1.271 5 H -0.271 1.271 6 H -0.274 1.274 7 C -0.332 4.332 8 H 0.077 0.923 9 N -0.575 5.575 10 C 0.439 3.561 11 O -0.616 6.616 12 C 0.059 3.941 13 N -0.541 5.541 14 C 0.058 3.942 15 C -0.136 4.136 16 C 0.090 3.910 17 F -0.227 7.227 18 C -0.134 4.134 19 C 0.061 3.939 20 H 0.277 0.723 21 H 0.396 0.604 22 H 0.113 0.887 23 H 0.070 0.930 24 H 0.095 0.905 25 H 0.055 0.945 26 H 0.104 0.896 27 H 0.067 0.933 28 H 0.103 0.897 29 H 0.085 0.915 30 H 0.061 0.939 31 H 0.046 0.954 32 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.434 -14.153 -2.296 14.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.212 4.212 3 Si 0.815 3.185 4 H -0.197 1.197 5 H -0.195 1.195 6 H -0.199 1.199 7 C -0.462 4.462 8 H 0.095 0.905 9 N -0.213 5.213 10 C 0.227 3.773 11 O -0.501 6.501 12 C -0.072 4.072 13 N -0.267 5.267 14 C -0.069 4.069 15 C -0.174 4.174 16 C 0.054 3.946 17 F -0.208 7.208 18 C -0.173 4.173 19 C -0.067 4.067 20 H 0.087 0.913 21 H 0.230 0.770 22 H 0.131 0.869 23 H 0.088 0.912 24 H 0.113 0.887 25 H 0.073 0.927 26 H 0.122 0.878 27 H 0.086 0.914 28 H 0.121 0.879 29 H 0.104 0.896 30 H 0.079 0.921 31 H 0.064 0.936 32 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.379 -13.973 -1.939 14.112 hybrid contribution -0.515 0.989 -0.517 1.229 sum -0.894 -12.985 -2.456 13.245 Atomic orbital electron populations 1.69666 1.06789 1.29242 1.50512 1.25999 0.96511 1.02297 0.96353 0.84952 0.77880 0.77034 0.78618 1.19657 1.19546 1.19907 1.19641 0.92633 0.84067 1.49819 0.90460 1.41949 1.09307 1.04689 1.65348 1.20849 0.88337 0.86000 0.82127 1.90486 1.15793 1.87834 1.56036 1.21716 0.93282 0.88293 1.03874 1.61441 1.31930 1.02460 1.30855 1.22144 0.95169 0.86732 1.02863 1.22152 0.99110 0.99821 0.96274 1.21770 0.87806 0.84715 1.00263 1.92774 1.65298 1.64729 1.97959 1.22085 0.98587 0.93502 1.03087 1.21976 0.96371 0.99453 0.88897 0.91333 0.77005 0.86862 0.91209 0.88684 0.92681 0.87799 0.91406 0.87913 0.89626 0.92058 0.93554 0.92147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.51 13.05 21.66 0.28 -49.22 16 2 C -0.01 -0.64 5.50 84.93 0.47 -0.17 16 3 Si 0.99 42.95 29.55 68.60 2.03 44.98 16 4 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 5 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 6 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 7 C -0.33 -18.84 9.68 84.04 0.81 -18.03 16 8 H 0.08 4.70 7.16 -2.91 -0.02 4.67 16 9 N -0.58 -29.34 5.29 -306.98 -1.62 -30.96 16 10 C 0.44 20.76 7.31 87.66 0.64 21.40 16 11 O -0.62 -34.04 14.29 -3.07 -0.04 -34.08 16 12 C 0.06 1.99 5.45 85.56 0.47 2.45 16 13 N -0.54 -16.91 4.35 -900.94 -3.92 -20.83 16 14 C 0.06 1.25 5.46 86.33 0.47 1.72 16 15 C -0.14 -2.73 5.83 30.65 0.18 -2.56 16 16 C 0.09 1.98 3.94 30.68 0.12 2.10 16 17 F -0.23 -5.75 17.09 44.97 0.77 -4.98 16 18 C -0.13 -3.61 5.83 30.65 0.18 -3.43 16 19 C 0.06 1.90 5.12 86.33 0.44 2.34 16 20 H 0.28 13.95 8.31 -92.71 -0.77 13.18 16 21 H 0.40 19.10 7.90 -92.71 -0.73 18.37 16 22 H 0.11 3.29 7.98 -2.39 -0.02 3.27 16 23 H 0.07 2.04 8.12 -2.39 -0.02 2.02 16 24 H 0.09 1.80 8.01 -2.39 -0.02 1.78 16 25 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 26 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 27 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 28 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 30 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 31 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.06 2.42 6.06 -2.39 -0.01 2.40 16 Total: -1.00 -66.64 269.58 1.67 -64.98 By element: Atomic # 1 Polarization: 23.92 SS G_CDS: 0.39 Total: 24.31 kcal Atomic # 6 Polarization: 2.03 SS G_CDS: 3.78 Total: 5.81 kcal Atomic # 7 Polarization: -95.76 SS G_CDS: -5.26 Total: -101.01 kcal Atomic # 8 Polarization: -34.04 SS G_CDS: -0.04 Total: -34.08 kcal Atomic # 9 Polarization: -5.75 SS G_CDS: 0.77 Total: -4.98 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Total: -66.64 1.67 -64.98 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880242453.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.800 kcal (2) G-P(sol) polarization free energy of solvation -66.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds