Wall clock time and date at job start Sun Mar 29 2020 21:34:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86803 * 120.00096 * 2 1 4 4 H 1.48491 * 109.47423 * 270.00336 * 3 2 1 5 5 H 1.48505 * 109.46968 * 30.00278 * 3 2 1 6 6 H 1.48504 * 109.47133 * 149.99742 * 3 2 1 7 7 C 1.38955 * 120.00272 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99767 * 359.97438 * 7 2 1 9 9 N 1.37092 * 120.00107 * 179.97438 * 7 2 1 10 10 C 1.34784 * 119.99968 * 179.97438 * 9 7 2 11 11 O 1.21291 * 119.99407 * 359.97438 * 10 9 7 12 12 C 1.50697 * 119.99774 * 179.72830 * 10 9 7 13 13 N 1.46904 * 109.46892 * 179.97438 * 12 10 9 14 14 C 1.47842 * 111.00132 * 290.84315 * 13 12 10 15 15 C 1.54903 * 104.79653 * 213.63866 * 14 13 12 16 16 C 1.55135 * 101.65451 * 37.06399 * 15 14 13 17 17 H 1.09002 * 110.85689 * 82.80512 * 16 15 14 18 18 C 1.53008 * 110.70624 * 205.96860 * 16 15 14 19 19 F 1.39899 * 109.46699 * 293.59645 * 18 16 15 20 20 C 1.47441 * 111.00042 * 169.99432 * 13 12 10 21 21 H 0.97000 * 119.99725 * 0.02562 * 1 2 3 22 22 H 0.97005 * 120.00185 * 359.97438 * 9 7 2 23 23 H 1.09001 * 109.46809 * 299.99238 * 12 10 9 24 24 H 1.08993 * 109.47525 * 59.99679 * 12 10 9 25 25 H 1.09004 * 110.37124 * 332.46516 * 14 13 12 26 26 H 1.09001 * 110.37943 * 94.80447 * 14 13 12 27 27 H 1.09003 * 110.98806 * 278.97784 * 15 14 13 28 28 H 1.08999 * 110.99739 * 155.16148 * 15 14 13 29 29 H 1.08989 * 109.47112 * 53.60151 * 18 16 15 30 30 H 1.08997 * 109.46819 * 173.60495 * 18 16 15 31 31 H 1.09001 * 109.89007 * 242.66493 * 20 13 12 32 32 H 1.09001 * 109.89037 * 3.69597 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4956 2.0465 -1.4000 5 1 1.4456 2.6527 0.7001 6 1 3.5457 1.4402 0.7001 7 6 2.0089 -1.2034 -0.0005 8 1 1.4689 -2.1387 -0.0005 9 7 3.3799 -1.2033 -0.0011 10 6 4.0538 -2.3706 -0.0011 11 8 3.4473 -3.4209 -0.0001 12 6 5.5608 -2.3705 -0.0078 13 7 6.0505 -3.7555 -0.0058 14 6 5.7699 -4.4148 1.2873 15 6 6.9632 -5.3776 1.5076 16 6 8.1442 -4.5484 0.9380 17 1 8.5164 -3.8424 1.6804 18 6 9.2687 -5.4680 0.4574 19 9 9.8304 -6.1301 1.5543 20 6 7.5035 -3.8025 -0.2514 21 1 -0.4850 0.8401 -0.0004 22 1 3.8649 -0.3632 -0.0014 23 1 5.9200 -1.8590 -0.9009 24 1 5.9281 -1.8543 0.8791 25 1 5.7253 -3.6764 2.0879 26 1 4.8359 -4.9742 1.2335 27 1 6.8281 -6.3017 0.9456 28 1 7.1072 -5.5849 2.5680 29 1 8.8653 -6.2005 -0.2416 30 1 10.0355 -4.8746 -0.0404 31 1 7.7058 -4.3394 -1.1782 32 1 7.9019 -2.7899 -0.3150 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000880293311.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:34:00 Heat of formation + Delta-G solvation = -80.995487 kcal Electronic energy + Delta-G solvation = -16010.263688 eV Core-core repulsion = 13113.151464 eV Total energy + Delta-G solvation = -2897.112224 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.117 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -47.75574 -39.33392 -37.72426 -34.00196 -32.72591 -31.62974 -29.65595 -27.41992 -25.13261 -23.81117 -21.10299 -20.53449 -19.35873 -18.33466 -16.69331 -16.11198 -15.81400 -15.47456 -15.32324 -14.73750 -14.55832 -13.87848 -13.40793 -13.12095 -13.03840 -12.69676 -12.20187 -12.08914 -11.68500 -11.59453 -11.25567 -11.09996 -11.02730 -10.71060 -10.59093 -10.58755 -9.96534 -9.54606 -8.56860 -8.16709 -7.98385 -6.29836 -3.81065 3.02618 3.07107 3.15211 3.75841 3.95587 4.11152 4.26644 4.37452 4.55341 4.78177 4.88243 5.00425 5.18663 5.23691 5.35692 5.44369 5.53125 5.61504 5.65330 5.73342 5.88113 5.92603 5.99473 6.19501 6.42099 7.14315 7.16840 7.60096 8.15910 8.62063 8.96948 9.44037 9.85653 10.83457 Molecular weight = 230.12amu Principal moments of inertia in cm(-1) A = 0.062591 B = 0.005107 C = 0.004883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 447.239235 B = 5481.610784 C = 5733.363710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.041 3.959 3 Si 0.879 3.121 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.270 1.270 7 C -0.304 4.304 8 H 0.119 0.881 9 N -0.593 5.593 10 C 0.453 3.547 11 O -0.558 6.558 12 C 0.037 3.963 13 N -0.505 5.505 14 C 0.051 3.949 15 C -0.123 4.123 16 C -0.146 4.146 17 H 0.085 0.915 18 C 0.074 3.926 19 F -0.220 7.220 20 C 0.049 3.951 21 H 0.273 0.727 22 H 0.370 0.630 23 H 0.089 0.911 24 H 0.049 0.951 25 H 0.042 0.958 26 H 0.097 0.903 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.256 -4.215 1.086 18.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.162 4.162 3 Si 0.706 3.294 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.196 1.196 7 C -0.432 4.432 8 H 0.137 0.863 9 N -0.233 5.233 10 C 0.239 3.761 11 O -0.439 6.439 12 C -0.094 4.094 13 N -0.229 5.229 14 C -0.076 4.076 15 C -0.161 4.161 16 C -0.166 4.166 17 H 0.103 0.897 18 C 0.018 3.982 19 F -0.201 7.201 20 C -0.079 4.079 21 H 0.084 0.916 22 H 0.202 0.798 23 H 0.108 0.892 24 H 0.067 0.933 25 H 0.061 0.939 26 H 0.115 0.885 27 H 0.096 0.904 28 H 0.093 0.907 29 H 0.097 0.903 30 H 0.092 0.908 31 H 0.098 0.902 32 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 17.365 -5.077 0.704 18.105 hybrid contribution 1.007 1.997 0.678 2.337 sum 18.372 -3.080 1.382 18.679 Atomic orbital electron populations 1.69622 1.05629 1.27441 1.49586 1.25029 0.95476 0.97925 0.97735 0.86676 0.79729 0.84110 0.78880 1.19607 1.20207 1.19598 1.19427 0.79235 0.96615 1.47968 0.86295 1.42212 1.07519 1.06110 1.67486 1.19642 0.88042 0.84554 0.83885 1.90549 1.69362 1.30862 1.53162 1.22159 0.95794 0.89984 1.01512 1.63256 1.11501 1.15158 1.32991 1.23063 0.99226 0.96358 0.88946 1.22805 0.93460 0.98656 1.01228 1.23043 0.96062 0.98255 0.99263 0.89670 1.21976 0.95280 0.95112 0.85803 1.92756 1.86887 1.82918 1.57518 1.22813 0.87938 0.99566 0.97599 0.91646 0.79782 0.89245 0.93265 0.93919 0.88521 0.90411 0.90695 0.90325 0.90827 0.90191 0.92444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.90 13.96 55.50 0.77 -25.12 16 2 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 3 Si 0.88 19.41 27.74 -169.99 -4.71 14.69 16 4 H -0.27 -5.85 7.11 56.52 0.40 -5.44 16 5 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 6 H -0.27 -5.44 6.52 56.52 0.37 -5.07 16 7 C -0.30 -8.64 10.16 -14.93 -0.15 -8.79 16 8 H 0.12 3.87 7.39 -52.48 -0.39 3.48 16 9 N -0.59 -14.23 5.09 -10.96 -0.06 -14.29 16 10 C 0.45 10.38 7.57 -10.98 -0.08 10.30 16 11 O -0.56 -15.03 14.62 5.55 0.08 -14.95 16 12 C 0.04 0.63 5.05 -4.98 -0.03 0.60 16 13 N -0.51 -8.06 4.86 -232.69 -1.13 -9.19 16 14 C 0.05 0.80 5.75 -2.30 -0.01 0.78 16 15 C -0.12 -1.47 6.44 -24.60 -0.16 -1.63 16 16 C -0.15 -1.51 3.30 -88.80 -0.29 -1.80 16 17 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 18 C 0.07 0.64 6.82 37.16 0.25 0.89 16 19 F -0.22 -2.47 17.26 2.25 0.04 -2.43 16 20 C 0.05 0.56 6.46 -2.84 -0.02 0.54 16 21 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 22 H 0.37 7.77 5.76 -40.82 -0.24 7.53 16 23 H 0.09 1.31 8.03 -51.93 -0.42 0.89 16 24 H 0.05 0.74 7.85 -51.93 -0.41 0.33 16 25 H 0.04 0.67 7.62 -51.93 -0.40 0.27 16 26 H 0.10 1.77 7.38 -51.93 -0.38 1.39 16 27 H 0.08 0.91 8.02 -51.93 -0.42 0.50 16 28 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.08 0.62 8.10 -51.94 -0.42 0.20 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.08 0.84 7.82 -51.93 -0.41 0.43 16 32 H 0.06 0.58 7.55 -51.93 -0.39 0.19 16 LS Contribution 269.57 15.07 4.06 4.06 Total: -1.00 -32.53 269.57 -5.83 -38.36 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: -4.30 Total: 6.93 kcal Atomic # 6 Polarization: 2.52 SS G_CDS: -0.59 Total: 1.94 kcal Atomic # 7 Polarization: -48.19 SS G_CDS: -0.41 Total: -48.60 kcal Atomic # 8 Polarization: -15.03 SS G_CDS: 0.08 Total: -14.95 kcal Atomic # 9 Polarization: -2.47 SS G_CDS: 0.04 Total: -2.43 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -4.71 Total: 14.69 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -32.53 -5.83 -38.36 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880293311.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.636 kcal (2) G-P(sol) polarization free energy of solvation -32.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds