Wall clock time and date at job start Sun Mar 29 2020 21:34:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86803 * 120.00096 * 2 1 4 4 H 1.48491 * 109.47423 * 270.00336 * 3 2 1 5 5 H 1.48505 * 109.46968 * 30.00278 * 3 2 1 6 6 H 1.48504 * 109.47133 * 149.99742 * 3 2 1 7 7 C 1.38955 * 120.00272 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99767 * 359.97438 * 7 2 1 9 9 N 1.37092 * 120.00107 * 179.97438 * 7 2 1 10 10 C 1.34784 * 119.99968 * 179.97438 * 9 7 2 11 11 O 1.21291 * 119.99407 * 359.97438 * 10 9 7 12 12 C 1.50697 * 119.99774 * 179.72830 * 10 9 7 13 13 N 1.46904 * 109.46892 * 179.97438 * 12 10 9 14 14 C 1.47842 * 111.00132 * 290.84315 * 13 12 10 15 15 C 1.54903 * 104.79653 * 213.63866 * 14 13 12 16 16 C 1.55135 * 101.65451 * 37.06399 * 15 14 13 17 17 H 1.09002 * 110.85689 * 82.80512 * 16 15 14 18 18 C 1.53008 * 110.70624 * 205.96860 * 16 15 14 19 19 F 1.39899 * 109.46699 * 293.59645 * 18 16 15 20 20 C 1.47441 * 111.00042 * 169.99432 * 13 12 10 21 21 H 0.97000 * 119.99725 * 0.02562 * 1 2 3 22 22 H 0.97005 * 120.00185 * 359.97438 * 9 7 2 23 23 H 1.09001 * 109.46809 * 299.99238 * 12 10 9 24 24 H 1.08993 * 109.47525 * 59.99679 * 12 10 9 25 25 H 1.09004 * 110.37124 * 332.46516 * 14 13 12 26 26 H 1.09001 * 110.37943 * 94.80447 * 14 13 12 27 27 H 1.09003 * 110.98806 * 278.97784 * 15 14 13 28 28 H 1.08999 * 110.99739 * 155.16148 * 15 14 13 29 29 H 1.08989 * 109.47112 * 53.60151 * 18 16 15 30 30 H 1.08997 * 109.46819 * 173.60495 * 18 16 15 31 31 H 1.09001 * 109.89007 * 242.66493 * 20 13 12 32 32 H 1.09001 * 109.89037 * 3.69597 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4956 2.0465 -1.4000 5 1 1.4456 2.6527 0.7001 6 1 3.5457 1.4402 0.7001 7 6 2.0089 -1.2034 -0.0005 8 1 1.4689 -2.1387 -0.0005 9 7 3.3799 -1.2033 -0.0011 10 6 4.0538 -2.3706 -0.0011 11 8 3.4473 -3.4209 -0.0001 12 6 5.5608 -2.3705 -0.0078 13 7 6.0505 -3.7555 -0.0058 14 6 5.7699 -4.4148 1.2873 15 6 6.9632 -5.3776 1.5076 16 6 8.1442 -4.5484 0.9380 17 1 8.5164 -3.8424 1.6804 18 6 9.2687 -5.4680 0.4574 19 9 9.8304 -6.1301 1.5543 20 6 7.5035 -3.8025 -0.2514 21 1 -0.4850 0.8401 -0.0004 22 1 3.8649 -0.3632 -0.0014 23 1 5.9200 -1.8590 -0.9009 24 1 5.9281 -1.8543 0.8791 25 1 5.7253 -3.6764 2.0879 26 1 4.8359 -4.9742 1.2335 27 1 6.8281 -6.3017 0.9456 28 1 7.1072 -5.5849 2.5680 29 1 8.8653 -6.2005 -0.2416 30 1 10.0355 -4.8746 -0.0404 31 1 7.7058 -4.3394 -1.1782 32 1 7.9019 -2.7899 -0.3150 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880293311.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:34:00 Heat of formation + Delta-G solvation = -106.284885 kcal Electronic energy + Delta-G solvation = -16011.360318 eV Core-core repulsion = 13113.151464 eV Total energy + Delta-G solvation = -2898.208854 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.117 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -48.50869 -40.73263 -39.27064 -35.99945 -33.95209 -33.63408 -30.68475 -28.82664 -26.48829 -25.23073 -22.30181 -21.39657 -21.24667 -20.23235 -17.96481 -17.36712 -16.78756 -16.65587 -16.52131 -16.23329 -15.95776 -15.17511 -14.98374 -14.56485 -14.42448 -14.21870 -13.77626 -13.36684 -13.07671 -12.80087 -12.47078 -12.41384 -12.19167 -12.00022 -11.96745 -11.55548 -11.51897 -11.42110 -10.39128 -10.24090 -9.21403 -8.41109 -6.02027 1.29869 1.35903 1.44557 1.96754 2.23247 2.65886 3.14416 3.23941 3.47098 3.56412 3.73880 4.15553 4.19556 4.22648 4.30440 4.35349 4.43171 4.52994 4.61281 4.77001 4.79110 4.95775 5.04804 5.15759 5.31353 5.53187 5.90406 5.98377 6.12519 6.60640 6.89019 7.40359 7.98383 8.76808 Molecular weight = 230.12amu Principal moments of inertia in cm(-1) A = 0.062591 B = 0.005107 C = 0.004883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 447.239235 B = 5481.610784 C = 5733.363710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.015 4.015 3 Si 0.966 3.034 4 H -0.256 1.256 5 H -0.275 1.275 6 H -0.232 1.232 7 C -0.329 4.329 8 H 0.053 0.947 9 N -0.593 5.593 10 C 0.449 3.551 11 O -0.609 6.609 12 C 0.049 3.951 13 N -0.533 5.533 14 C 0.050 3.950 15 C -0.118 4.118 16 C -0.136 4.136 17 H 0.093 0.907 18 C 0.073 3.927 19 F -0.235 7.235 20 C 0.050 3.950 21 H 0.279 0.721 22 H 0.389 0.611 23 H 0.124 0.876 24 H 0.078 0.922 25 H 0.038 0.962 26 H 0.052 0.948 27 H 0.076 0.924 28 H 0.081 0.919 29 H 0.086 0.914 30 H 0.102 0.898 31 H 0.092 0.908 32 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.125 -2.202 0.783 22.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.214 4.214 3 Si 0.786 3.214 4 H -0.180 1.180 5 H -0.200 1.200 6 H -0.155 1.155 7 C -0.458 4.458 8 H 0.071 0.929 9 N -0.235 5.235 10 C 0.237 3.763 11 O -0.492 6.492 12 C -0.082 4.082 13 N -0.258 5.258 14 C -0.078 4.078 15 C -0.156 4.156 16 C -0.156 4.156 17 H 0.111 0.889 18 C 0.018 3.982 19 F -0.216 7.216 20 C -0.077 4.077 21 H 0.088 0.912 22 H 0.225 0.775 23 H 0.141 0.859 24 H 0.096 0.904 25 H 0.057 0.943 26 H 0.071 0.929 27 H 0.094 0.906 28 H 0.100 0.900 29 H 0.105 0.895 30 H 0.121 0.879 31 H 0.110 0.890 32 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 21.274 -3.079 0.399 21.499 hybrid contribution -0.282 1.221 0.760 1.466 sum 20.992 -1.857 1.159 21.106 Atomic orbital electron populations 1.69809 1.08187 1.29245 1.50434 1.26126 0.96464 1.02737 0.96060 0.85349 0.79422 0.76625 0.80006 1.18000 1.20045 1.15503 1.18996 0.81536 0.94882 1.50368 0.92867 1.42038 1.05786 1.07570 1.68154 1.20977 0.90954 0.83302 0.81063 1.90535 1.71355 1.32765 1.54570 1.22094 0.90279 0.91420 1.04390 1.63135 1.14885 1.14684 1.33073 1.22920 0.98954 0.96763 0.89115 1.22747 0.92858 0.98045 1.01922 1.22979 0.95577 0.98163 0.98880 0.88873 1.22115 0.95482 0.95314 0.85301 1.92730 1.87086 1.83294 1.58485 1.22902 0.84914 1.01477 0.98400 0.91151 0.77505 0.85858 0.90372 0.94317 0.92901 0.90566 0.89989 0.89528 0.87943 0.88964 0.89916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.90 13.96 21.66 0.30 -56.60 16 2 C -0.02 -0.87 5.50 84.93 0.47 -0.40 16 3 Si 0.97 38.80 27.74 68.60 1.90 40.70 16 4 H -0.26 -9.68 7.11 99.48 0.71 -8.98 16 5 H -0.28 -10.99 7.11 99.48 0.71 -10.28 16 6 H -0.23 -7.80 6.52 99.48 0.65 -7.15 16 7 C -0.33 -19.49 10.16 84.04 0.85 -18.63 16 8 H 0.05 3.77 7.39 -2.91 -0.02 3.75 16 9 N -0.59 -28.29 5.09 -306.97 -1.56 -29.85 16 10 C 0.45 20.64 7.57 87.65 0.66 21.31 16 11 O -0.61 -34.44 14.62 -3.06 -0.04 -34.49 16 12 C 0.05 1.52 5.05 85.56 0.43 1.96 16 13 N -0.53 -16.02 4.86 -890.11 -4.33 -20.35 16 14 C 0.05 1.56 5.75 86.77 0.50 2.06 16 15 C -0.12 -2.66 6.44 31.98 0.21 -2.45 16 16 C -0.14 -2.34 3.30 -9.61 -0.03 -2.37 16 17 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 18 C 0.07 1.00 6.82 71.98 0.49 1.49 16 19 F -0.23 -4.62 17.26 44.97 0.78 -3.85 16 20 C 0.05 0.95 6.46 86.65 0.56 1.51 16 21 H 0.28 15.47 8.31 -92.71 -0.77 14.70 16 22 H 0.39 15.24 5.76 -92.70 -0.53 14.70 16 23 H 0.12 3.01 8.03 -2.39 -0.02 2.99 16 24 H 0.08 2.01 7.85 -2.39 -0.02 1.99 16 25 H 0.04 1.20 7.62 -2.38 -0.02 1.18 16 26 H 0.05 2.07 7.38 -2.39 -0.02 2.05 16 27 H 0.08 1.73 8.02 -2.39 -0.02 1.71 16 28 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 29 H 0.09 1.07 8.10 -2.39 -0.02 1.05 16 30 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.09 1.55 7.82 -2.39 -0.02 1.53 16 32 H 0.08 1.20 7.55 -2.39 -0.02 1.18 16 Total: -1.00 -77.23 269.57 1.72 -75.51 By element: Atomic # 1 Polarization: 23.92 SS G_CDS: 0.53 Total: 24.45 kcal Atomic # 6 Polarization: 0.33 SS G_CDS: 4.14 Total: 4.47 kcal Atomic # 7 Polarization: -101.21 SS G_CDS: -5.59 Total: -106.80 kcal Atomic # 8 Polarization: -34.44 SS G_CDS: -0.04 Total: -34.49 kcal Atomic # 9 Polarization: -4.62 SS G_CDS: 0.78 Total: -3.85 kcal Atomic # 14 Polarization: 38.80 SS G_CDS: 1.90 Total: 40.70 kcal Total: -77.23 1.72 -75.51 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880293311.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.773 kcal (2) G-P(sol) polarization free energy of solvation -77.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds