Wall clock time and date at job start Sun Mar 29 2020 21:33:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86801 * 120.00181 * 2 1 4 4 H 1.48504 * 109.46770 * 240.00212 * 3 2 1 5 5 H 1.48501 * 109.46941 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.46934 * 119.99843 * 3 2 1 7 7 C 1.37874 * 119.99726 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00147 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00354 * 359.97438 * 7 2 1 10 10 N 1.46498 * 109.47096 * 180.02562 * 9 7 2 11 11 C 1.34782 * 119.99675 * 180.02562 * 10 9 7 12 12 O 1.21582 * 120.00071 * 4.97931 * 11 10 9 13 13 N 1.34774 * 119.99915 * 184.98301 * 11 10 9 14 14 C 1.46926 * 120.63121 * 174.77166 * 13 11 10 15 15 C 1.53195 * 108.89465 * 126.33965 * 14 13 11 16 16 C 1.53354 * 109.14570 * 54.57617 * 15 14 13 17 17 F 1.39899 * 109.41472 * 178.67314 * 16 15 14 18 18 C 1.53040 * 109.60905 * 298.70899 * 16 15 14 19 19 C 1.46926 * 120.63157 * 354.78914 * 13 11 10 20 20 H 0.96998 * 119.99708 * 0.02562 * 1 2 3 21 21 H 1.09007 * 109.46781 * 60.00452 * 9 7 2 22 22 H 1.08998 * 109.47255 * 300.00817 * 9 7 2 23 23 H 0.96993 * 120.00686 * 359.97438 * 10 9 7 24 24 H 1.08999 * 109.58363 * 246.19988 * 14 13 11 25 25 H 1.09002 * 109.58625 * 6.48116 * 14 13 11 26 26 H 1.08997 * 109.49623 * 174.65400 * 15 14 13 27 27 H 1.09002 * 109.49577 * 294.75334 * 15 14 13 28 28 H 1.08994 * 109.42367 * 58.75582 * 16 15 14 29 29 H 1.08993 * 109.50186 * 301.42491 * 18 16 15 30 30 H 1.09004 * 109.52060 * 181.34332 * 18 16 15 31 31 H 1.09010 * 109.58451 * 353.37613 * 19 13 11 32 32 H 1.08999 * 109.58904 * 113.65827 * 19 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1030 1.6963 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 1.7537 -4.8834 -0.0011 12 8 0.5621 -5.1068 -0.0929 13 7 2.6253 -5.9064 0.1003 14 6 2.1452 -7.2902 0.2162 15 6 2.8098 -8.1386 -0.8726 16 6 4.3323 -7.9875 -0.7688 17 9 4.9461 -8.7838 -1.7416 18 6 4.7194 -6.5234 -0.9899 19 6 4.0736 -5.6590 0.0975 20 1 -0.4849 0.8401 -0.0004 21 1 0.6240 -2.5567 -0.8904 22 1 0.6246 -2.5571 0.8896 23 1 3.1566 -3.4355 -0.0009 24 1 2.4055 -7.6862 1.1978 25 1 1.0630 -7.3135 0.0879 26 1 2.5345 -9.1845 -0.7374 27 1 2.4767 -7.7980 -1.8531 28 1 4.6614 -8.3047 0.2206 29 1 4.3686 -6.1982 -1.9693 30 1 5.8035 -6.4217 -0.9395 31 1 4.2640 -4.6062 -0.1116 32 1 4.4907 -5.9196 1.0702 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000883655622.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:33:45 Heat of formation + Delta-G solvation = -86.603055 kcal Electronic energy + Delta-G solvation = -16193.334363 eV Core-core repulsion = 13295.978977 eV Total energy + Delta-G solvation = -2897.355386 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.117 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -47.75113 -39.82010 -36.93465 -34.29453 -32.66404 -31.78068 -31.11413 -27.21508 -24.76665 -23.58238 -22.43476 -20.98165 -19.25499 -18.23981 -16.34676 -16.01925 -15.86373 -15.25464 -15.19047 -15.11501 -14.61660 -13.88137 -13.69252 -13.24163 -12.71484 -12.56573 -12.30956 -11.99581 -11.91487 -11.71530 -11.45352 -10.97183 -10.87624 -10.66391 -10.51559 -10.27888 -9.42069 -9.37246 -8.74145 -8.50843 -7.76897 -6.15689 -4.22626 3.09658 3.25461 3.30571 3.32240 3.82327 4.29025 4.31752 4.39519 4.50251 4.68641 4.76853 4.91930 5.11859 5.20303 5.30992 5.43332 5.54644 5.64777 5.79978 5.85771 5.91456 6.08988 6.69718 7.08099 7.48649 7.51219 7.56261 7.83035 8.00912 8.73523 8.87301 9.28645 9.45990 10.94516 Molecular weight = 230.12amu Principal moments of inertia in cm(-1) A = 0.047196 B = 0.005472 C = 0.005035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 593.122271 B = 5116.197114 C = 5559.467326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.904 3.096 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.543 4.543 8 H 0.061 0.939 9 C 0.266 3.734 10 N -0.729 5.729 11 C 0.698 3.302 12 O -0.597 6.597 13 N -0.642 5.642 14 C 0.133 3.867 15 C -0.160 4.160 16 C 0.093 3.907 17 F -0.217 7.217 18 C -0.161 4.161 19 C 0.116 3.884 20 H 0.266 0.734 21 H 0.026 0.974 22 H 0.024 0.976 23 H 0.385 0.615 24 H 0.063 0.937 25 H 0.100 0.900 26 H 0.084 0.916 27 H 0.079 0.921 28 H 0.084 0.916 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.316 -13.591 0.379 17.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.139 4.139 3 Si 0.731 3.269 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.581 4.581 8 H 0.079 0.921 9 C 0.145 3.855 10 N -0.383 5.383 11 C 0.399 3.601 12 O -0.476 6.476 13 N -0.382 5.382 14 C 0.009 3.991 15 C -0.199 4.199 16 C 0.056 3.944 17 F -0.198 7.198 18 C -0.200 4.200 19 C -0.008 4.008 20 H 0.076 0.924 21 H 0.044 0.956 22 H 0.042 0.958 23 H 0.220 0.780 24 H 0.081 0.919 25 H 0.119 0.881 26 H 0.102 0.898 27 H 0.097 0.903 28 H 0.102 0.898 29 H 0.099 0.901 30 H 0.103 0.897 31 H 0.107 0.893 32 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 9.233 -13.569 0.308 16.416 hybrid contribution 1.022 0.957 -0.105 1.404 sum 10.255 -12.612 0.203 16.256 Atomic orbital electron populations 1.69971 1.06093 1.27399 1.48785 1.24938 0.94911 0.99376 0.94721 0.86470 0.79407 0.82332 0.78651 1.20093 1.21053 1.20086 1.21170 0.93169 0.90447 1.53351 0.92076 1.19001 0.87814 0.81074 0.97653 1.45894 1.10850 1.04417 1.77092 1.16053 0.84791 0.81083 0.78183 1.90860 1.14388 1.83802 1.58506 1.47352 1.05156 1.06070 1.79593 1.21262 1.01146 0.79786 0.96864 1.22614 0.93976 1.01447 1.01864 1.21626 0.92875 0.89707 0.90152 1.92806 1.84763 1.75934 1.66263 1.22535 1.01800 0.94216 1.01402 1.21482 0.80881 1.00317 0.98128 0.92386 0.95631 0.95766 0.77967 0.91857 0.88144 0.89774 0.90258 0.89846 0.90135 0.89669 0.89314 0.91274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.11 13.29 55.43 0.74 -25.38 16 2 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 3 Si 0.90 20.77 29.54 -169.99 -5.02 15.75 16 4 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 5 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 6 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 7 C -0.54 -14.74 9.28 -34.44 -0.32 -15.06 16 8 H 0.06 1.54 7.60 -52.49 -0.40 1.14 16 9 C 0.27 7.13 5.43 -5.19 -0.03 7.10 16 10 N -0.73 -15.71 5.46 -66.41 -0.36 -16.08 16 11 C 0.70 14.55 8.29 -86.91 -0.72 13.83 16 12 O -0.60 -14.93 15.77 5.29 0.08 -14.84 16 13 N -0.64 -9.77 2.97 -178.49 -0.53 -10.30 16 14 C 0.13 1.69 6.43 -3.71 -0.02 1.66 16 15 C -0.16 -1.70 5.85 -26.45 -0.15 -1.85 16 16 C 0.09 0.92 3.84 -26.53 -0.10 0.82 16 17 F -0.22 -2.58 17.08 2.25 0.04 -2.54 16 18 C -0.16 -1.61 5.82 -26.61 -0.15 -1.77 16 19 C 0.12 1.32 6.39 -3.71 -0.02 1.30 16 20 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 21 H 0.03 0.76 8.14 -51.92 -0.42 0.34 16 22 H 0.02 0.72 8.14 -51.93 -0.42 0.29 16 23 H 0.39 7.11 5.81 -40.82 -0.24 6.88 16 24 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.10 1.48 6.99 -51.93 -0.36 1.11 16 26 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.09 1.03 5.65 -51.92 -0.29 0.74 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 269.84 15.07 4.07 4.07 Total: -1.00 -32.55 269.84 -6.85 -39.39 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: -4.23 Total: 2.21 kcal Atomic # 6 Polarization: 9.34 SS G_CDS: -1.62 Total: 7.71 kcal Atomic # 7 Polarization: -51.60 SS G_CDS: -0.16 Total: -51.75 kcal Atomic # 8 Polarization: -14.93 SS G_CDS: 0.08 Total: -14.84 kcal Atomic # 9 Polarization: -2.58 SS G_CDS: 0.04 Total: -2.54 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -32.55 -6.85 -39.39 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883655622.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.210 kcal (2) G-P(sol) polarization free energy of solvation -32.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds