Wall clock time and date at job start Sun Mar 29 2020 21:33:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86801 * 120.00181 * 2 1 4 4 H 1.48504 * 109.46770 * 240.00212 * 3 2 1 5 5 H 1.48501 * 109.46941 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.46934 * 119.99843 * 3 2 1 7 7 C 1.37874 * 119.99726 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00147 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00354 * 359.97438 * 7 2 1 10 10 N 1.46498 * 109.47096 * 180.02562 * 9 7 2 11 11 C 1.34782 * 119.99675 * 180.02562 * 10 9 7 12 12 O 1.21582 * 120.00071 * 4.97931 * 11 10 9 13 13 N 1.34774 * 119.99915 * 184.98301 * 11 10 9 14 14 C 1.46926 * 120.63121 * 174.77166 * 13 11 10 15 15 C 1.53195 * 108.89465 * 126.33965 * 14 13 11 16 16 C 1.53354 * 109.14570 * 54.57617 * 15 14 13 17 17 F 1.39899 * 109.41472 * 178.67314 * 16 15 14 18 18 C 1.53040 * 109.60905 * 298.70899 * 16 15 14 19 19 C 1.46926 * 120.63157 * 354.78914 * 13 11 10 20 20 H 0.96998 * 119.99708 * 0.02562 * 1 2 3 21 21 H 1.09007 * 109.46781 * 60.00452 * 9 7 2 22 22 H 1.08998 * 109.47255 * 300.00817 * 9 7 2 23 23 H 0.96993 * 120.00686 * 359.97438 * 10 9 7 24 24 H 1.08999 * 109.58363 * 246.19988 * 14 13 11 25 25 H 1.09002 * 109.58625 * 6.48116 * 14 13 11 26 26 H 1.08997 * 109.49623 * 174.65400 * 15 14 13 27 27 H 1.09002 * 109.49577 * 294.75334 * 15 14 13 28 28 H 1.08994 * 109.42367 * 58.75582 * 16 15 14 29 29 H 1.08993 * 109.50186 * 301.42491 * 18 16 15 30 30 H 1.09004 * 109.52060 * 181.34332 * 18 16 15 31 31 H 1.09010 * 109.58451 * 353.37613 * 19 13 11 32 32 H 1.08999 * 109.58904 * 113.65827 * 19 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1030 1.6963 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 1.7537 -4.8834 -0.0011 12 8 0.5621 -5.1068 -0.0929 13 7 2.6253 -5.9064 0.1003 14 6 2.1452 -7.2902 0.2162 15 6 2.8098 -8.1386 -0.8726 16 6 4.3323 -7.9875 -0.7688 17 9 4.9461 -8.7838 -1.7416 18 6 4.7194 -6.5234 -0.9899 19 6 4.0736 -5.6590 0.0975 20 1 -0.4849 0.8401 -0.0004 21 1 0.6240 -2.5567 -0.8904 22 1 0.6246 -2.5571 0.8896 23 1 3.1566 -3.4355 -0.0009 24 1 2.4055 -7.6862 1.1978 25 1 1.0630 -7.3135 0.0879 26 1 2.5345 -9.1845 -0.7374 27 1 2.4767 -7.7980 -1.8531 28 1 4.6614 -8.3047 0.2206 29 1 4.3686 -6.1982 -1.9693 30 1 5.8035 -6.4217 -0.9395 31 1 4.2640 -4.6062 -0.1116 32 1 4.4907 -5.9196 1.0702 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000883655622.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:33:45 Heat of formation + Delta-G solvation = -109.331333 kcal Electronic energy + Delta-G solvation = -16194.319935 eV Core-core repulsion = 13295.978977 eV Total energy + Delta-G solvation = -2898.340958 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.117 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -48.60303 -41.29206 -38.25429 -36.22342 -34.51822 -33.08940 -32.15265 -29.19261 -26.03292 -24.80172 -24.05111 -22.15408 -20.77508 -19.65380 -18.08948 -17.38149 -17.10062 -16.64930 -16.58561 -16.06215 -15.97604 -15.30513 -15.04870 -14.85914 -14.14817 -13.98032 -13.64825 -13.33832 -13.21538 -13.01237 -12.88171 -12.66675 -12.35231 -12.18962 -11.54348 -11.47884 -11.40028 -11.10506 -10.78802 -10.08349 -9.44757 -8.27624 -6.44561 1.44177 1.48838 1.56714 1.74723 2.17864 2.39445 3.07305 3.15061 3.50175 3.55933 3.66830 3.96175 4.00452 4.24752 4.36346 4.57298 4.67225 4.79384 4.85038 4.96068 5.00980 5.08571 5.23617 5.26988 5.47197 5.56372 5.71037 5.84755 6.08152 6.66550 7.15943 7.25748 7.67583 8.84591 Molecular weight = 230.12amu Principal moments of inertia in cm(-1) A = 0.047196 B = 0.005472 C = 0.005035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 593.122271 B = 5116.197114 C = 5559.467326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.005 3.995 3 Si 0.987 3.013 4 H -0.263 1.263 5 H -0.286 1.286 6 H -0.260 1.260 7 C -0.556 4.556 8 H 0.084 0.916 9 C 0.284 3.716 10 N -0.723 5.723 11 C 0.692 3.308 12 O -0.648 6.648 13 N -0.632 5.632 14 C 0.129 3.871 15 C -0.153 4.153 16 C 0.093 3.907 17 F -0.226 7.226 18 C -0.155 4.155 19 C 0.110 3.890 20 H 0.269 0.731 21 H -0.017 1.017 22 H -0.014 1.014 23 H 0.403 0.597 24 H 0.097 0.903 25 H 0.072 0.928 26 H 0.107 0.893 27 H 0.056 0.944 28 H 0.116 0.884 29 H 0.060 0.940 30 H 0.113 0.887 31 H 0.085 0.915 32 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.414 -13.907 1.040 19.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.195 4.195 3 Si 0.809 3.191 4 H -0.187 1.187 5 H -0.211 1.211 6 H -0.185 1.185 7 C -0.593 4.593 8 H 0.102 0.898 9 C 0.161 3.839 10 N -0.379 5.379 11 C 0.393 3.607 12 O -0.531 6.531 13 N -0.370 5.370 14 C 0.006 3.994 15 C -0.192 4.192 16 C 0.057 3.943 17 F -0.207 7.207 18 C -0.194 4.194 19 C -0.012 4.012 20 H 0.078 0.922 21 H 0.001 0.999 22 H 0.004 0.996 23 H 0.241 0.759 24 H 0.115 0.885 25 H 0.091 0.909 26 H 0.125 0.875 27 H 0.075 0.925 28 H 0.134 0.866 29 H 0.079 0.921 30 H 0.131 0.869 31 H 0.103 0.897 32 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 12.417 -13.949 0.970 18.701 hybrid contribution 0.048 0.937 -0.313 0.989 sum 12.466 -13.012 0.656 18.032 Atomic orbital electron populations 1.70142 1.08318 1.28651 1.49841 1.26069 0.95765 1.03876 0.93789 0.85184 0.77882 0.76481 0.79508 1.18732 1.21121 1.18495 1.21549 0.94260 0.90419 1.53120 0.89846 1.18421 0.88148 0.83421 0.93901 1.45479 1.10898 1.03854 1.77676 1.16263 0.84822 0.81750 0.77838 1.90821 1.17040 1.84637 1.60564 1.47398 1.06322 1.05627 1.77676 1.21481 0.99887 0.78581 0.99430 1.22546 0.94795 1.02129 0.99730 1.21744 0.91837 0.89421 0.91273 1.92792 1.84807 1.76184 1.66954 1.22497 1.03225 0.93996 0.99674 1.21813 0.78169 1.00701 1.00526 0.92228 0.99880 0.99576 0.75916 0.88469 0.90941 0.87457 0.92550 0.86649 0.92144 0.86907 0.89650 0.87836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.44 13.29 21.45 0.28 -56.15 16 2 C 0.00 0.26 5.46 84.65 0.46 0.72 16 3 Si 0.99 42.08 29.54 68.60 2.03 44.11 16 4 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 5 H -0.29 -12.12 7.11 99.48 0.71 -11.41 16 6 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 7 C -0.56 -30.36 9.28 25.60 0.24 -30.12 16 8 H 0.08 4.08 7.60 -2.91 -0.02 4.06 16 9 C 0.28 15.97 5.43 85.63 0.47 16.44 16 10 N -0.72 -31.79 5.46 -482.29 -2.63 -34.42 16 11 C 0.69 29.55 8.29 179.05 1.49 31.03 16 12 O -0.65 -34.13 15.77 -3.97 -0.06 -34.19 16 13 N -0.63 -18.58 2.97 -836.89 -2.49 -21.06 16 14 C 0.13 3.08 6.43 86.36 0.56 3.64 16 15 C -0.15 -2.95 5.85 30.78 0.18 -2.77 16 16 C 0.09 1.53 3.84 30.73 0.12 1.65 16 17 F -0.23 -4.73 17.08 44.97 0.77 -3.96 16 18 C -0.16 -2.64 5.82 30.67 0.18 -2.46 16 19 C 0.11 2.19 6.39 86.36 0.55 2.74 16 20 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 21 H -0.02 -1.07 8.14 -2.38 -0.02 -1.09 16 22 H -0.01 -0.86 8.14 -2.39 -0.02 -0.88 16 23 H 0.40 14.58 5.81 -92.71 -0.54 14.04 16 24 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 25 H 0.07 2.17 6.99 -2.39 -0.02 2.16 16 26 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 27 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.11 1.37 8.14 -2.38 -0.02 1.35 16 31 H 0.09 1.77 5.65 -2.38 -0.01 1.75 16 32 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 Total: -1.00 -74.19 269.84 2.71 -71.48 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: 0.58 Total: 13.34 kcal Atomic # 6 Polarization: 16.63 SS G_CDS: 4.23 Total: 20.86 kcal Atomic # 7 Polarization: -106.80 SS G_CDS: -4.84 Total: -111.64 kcal Atomic # 8 Polarization: -34.13 SS G_CDS: -0.06 Total: -34.19 kcal Atomic # 9 Polarization: -4.73 SS G_CDS: 0.77 Total: -3.96 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.11 kcal Total: -74.19 2.71 -71.48 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883655622.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.851 kcal (2) G-P(sol) polarization free energy of solvation -74.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds