Wall clock time and date at job start Sun Mar 29 2020 21:30:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86796 * 120.00105 * 2 1 4 4 H 1.48497 * 109.47405 * 239.99828 * 3 2 1 5 5 H 1.48502 * 109.46925 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47235 * 119.99285 * 3 2 1 7 7 C 1.38952 * 120.00179 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00220 * 179.73087 * 7 2 1 9 9 N 1.37097 * 119.99863 * 0.02562 * 7 2 1 10 10 C 1.34778 * 120.00339 * 179.72377 * 9 7 2 11 11 O 1.21298 * 119.99479 * 359.97438 * 10 9 7 12 12 C 1.50702 * 120.00293 * 179.97438 * 10 9 7 13 13 N 1.46899 * 109.47159 * 173.73024 * 12 10 9 14 14 C 1.46845 * 111.00196 * 169.40085 * 13 12 10 15 15 C 1.53036 * 109.52425 * 185.84200 * 14 13 12 16 16 C 1.53126 * 109.27744 * 300.81731 * 15 14 13 17 17 C 1.53120 * 109.15779 * 57.65511 * 16 15 14 18 18 H 1.09005 * 109.53641 * 62.31014 * 17 16 15 19 19 F 1.39901 * 109.50045 * 182.40392 * 17 16 15 20 20 C 1.46849 * 111.00066 * 293.61282 * 13 12 10 21 21 H 0.96995 * 120.00473 * 0.02562 * 1 2 3 22 22 H 0.97005 * 120.00513 * 359.71758 * 9 7 2 23 23 H 1.08995 * 109.46728 * 293.73009 * 12 10 9 24 24 H 1.09000 * 109.47025 * 53.72903 * 12 10 9 25 25 H 1.09002 * 109.45673 * 305.85587 * 14 13 12 26 26 H 1.08993 * 109.46476 * 65.82109 * 14 13 12 27 27 H 1.08993 * 109.50445 * 180.87928 * 15 14 13 28 28 H 1.08998 * 109.53672 * 60.77495 * 15 14 13 29 29 H 1.09002 * 109.51951 * 297.75500 * 16 15 14 30 30 H 1.08994 * 109.57320 * 177.59301 * 16 15 14 31 31 H 1.09001 * 109.45917 * 294.17472 * 20 13 12 32 32 H 1.09005 * 109.46529 * 54.14984 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6964 -1.2124 5 1 1.2831 2.7464 -0.0006 6 1 3.1017 1.6964 1.2126 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2034 -0.0039 9 7 1.3234 -2.3906 0.0005 10 6 1.9972 -3.5579 -0.0046 11 8 3.2102 -3.5578 -0.0096 12 6 1.2437 -4.8630 -0.0040 13 7 2.1905 -5.9751 -0.1614 14 6 1.5329 -7.2649 0.0844 15 6 2.5759 -8.3844 0.0554 16 6 3.2681 -8.3954 -1.3104 17 6 3.9034 -7.0252 -1.5627 18 1 4.6648 -6.8317 -0.8070 19 9 4.4910 -7.0096 -2.8323 20 6 2.8220 -5.9450 -1.4868 21 1 -0.4850 0.8400 -0.0004 22 1 0.3534 -2.3907 0.0043 23 1 0.7079 -4.9726 0.9388 24 1 0.5321 -4.8720 -0.8296 25 1 1.0482 -7.2452 1.0605 26 1 0.7856 -7.4446 -0.6884 27 1 2.0852 -9.3433 0.2223 28 1 3.3160 -8.2134 0.8371 29 1 2.5345 -8.6056 -2.0888 30 1 4.0415 -9.1632 -1.3217 31 1 2.0687 -6.1310 -2.2523 32 1 3.2737 -4.9668 -1.6518 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000902998356.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:30:14 Heat of formation + Delta-G solvation = -91.001998 kcal Electronic energy + Delta-G solvation = -16298.946892 eV Core-core repulsion = 13401.400754 eV Total energy + Delta-G solvation = -2897.546139 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.117 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -47.44086 -39.04437 -37.42533 -34.00091 -32.97325 -31.21782 -30.15724 -27.52983 -24.72098 -23.03790 -22.63842 -19.94421 -19.19698 -17.86963 -16.23160 -16.03675 -15.73783 -15.30220 -14.82739 -14.58558 -14.09039 -13.84994 -13.76131 -13.30826 -12.92706 -12.53478 -12.29732 -11.95463 -11.50709 -11.37721 -11.17524 -10.98835 -10.94376 -10.43743 -10.37838 -10.22110 -10.16234 -9.46107 -8.47388 -7.99087 -7.91228 -6.41383 -3.82236 3.20798 3.26450 3.30895 3.85868 3.90465 4.21489 4.58337 4.72663 4.75207 4.96014 5.14450 5.19196 5.25017 5.41252 5.53423 5.59873 5.70899 5.78492 5.80217 5.93002 5.98869 6.01589 6.24229 6.29558 6.35591 7.18924 7.31697 7.55461 8.06336 8.61943 9.18317 9.54425 10.06239 10.76306 Molecular weight = 230.12amu Principal moments of inertia in cm(-1) A = 0.046010 B = 0.005827 C = 0.005389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.423041 B = 4804.298497 C = 5194.865456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.023 3.977 3 Si 0.931 3.069 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.300 4.300 8 H 0.103 0.897 9 N -0.564 5.564 10 C 0.441 3.559 11 O -0.577 6.577 12 C 0.048 3.952 13 N -0.513 5.513 14 C 0.050 3.950 15 C -0.112 4.112 16 C -0.146 4.146 17 C 0.095 3.905 18 H 0.093 0.907 19 F -0.216 7.216 20 C 0.032 3.968 21 H 0.272 0.728 22 H 0.392 0.608 23 H 0.092 0.908 24 H 0.048 0.952 25 H 0.078 0.922 26 H 0.032 0.968 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.034 0.966 32 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.211 -13.835 -0.870 13.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.179 4.179 3 Si 0.758 3.242 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.429 4.429 8 H 0.121 0.879 9 N -0.200 5.200 10 C 0.227 3.773 11 O -0.461 6.461 12 C -0.083 4.083 13 N -0.237 5.237 14 C -0.078 4.078 15 C -0.150 4.150 16 C -0.183 4.183 17 C 0.059 3.941 18 H 0.111 0.889 19 F -0.197 7.197 20 C -0.096 4.096 21 H 0.082 0.918 22 H 0.225 0.775 23 H 0.110 0.890 24 H 0.066 0.934 25 H 0.097 0.903 26 H 0.050 0.950 27 H 0.091 0.909 28 H 0.095 0.905 29 H 0.087 0.913 30 H 0.091 0.909 31 H 0.052 0.948 32 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 1.270 -13.604 -0.554 13.674 hybrid contribution -0.933 0.782 -0.667 1.388 sum 0.338 -12.822 -1.221 12.884 Atomic orbital electron populations 1.69600 1.05947 1.28276 1.50551 1.25257 0.95625 0.99718 0.97284 0.85915 0.78759 0.80441 0.79089 1.19913 1.20984 1.19874 1.19657 0.93355 0.82214 1.47697 0.87943 1.41869 1.09185 1.04583 1.64399 1.19744 0.88448 0.84531 0.84619 1.90509 1.13632 1.86920 1.55031 1.21850 0.93552 0.91038 1.01878 1.61356 1.31755 1.01441 1.29180 1.22188 0.95337 0.89181 1.01110 1.21499 0.98683 0.97899 0.96912 1.22189 1.00721 0.96771 0.98669 1.21531 0.95893 0.95694 0.81003 0.88853 1.92780 1.85831 1.97596 1.43507 1.22676 0.96211 1.01400 0.89346 0.91820 0.77496 0.88957 0.93401 0.90308 0.94985 0.90946 0.90532 0.91311 0.90905 0.94800 0.87441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.56 13.05 55.50 0.72 -23.84 16 2 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 3 Si 0.93 21.12 29.55 -169.99 -5.02 16.09 16 4 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 5 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 6 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 7 C -0.30 -8.36 9.68 -14.93 -0.14 -8.51 16 8 H 0.10 2.99 7.16 -52.49 -0.38 2.62 16 9 N -0.56 -14.28 5.29 -10.96 -0.06 -14.33 16 10 C 0.44 10.40 7.31 -10.98 -0.08 10.32 16 11 O -0.58 -15.56 14.29 5.54 0.08 -15.48 16 12 C 0.05 0.85 5.45 -4.98 -0.03 0.83 16 13 N -0.51 -8.50 4.35 -236.12 -1.03 -9.53 16 14 C 0.05 0.62 5.46 -3.84 -0.02 0.60 16 15 C -0.11 -1.19 6.09 -26.65 -0.16 -1.35 16 16 C -0.15 -1.66 5.74 -26.60 -0.15 -1.81 16 17 C 0.10 1.41 4.04 -26.65 -0.11 1.30 16 18 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 19 F -0.22 -3.49 17.09 2.25 0.04 -3.45 16 20 C 0.03 0.54 4.85 -3.83 -0.02 0.53 16 21 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 22 H 0.39 9.48 7.90 -40.82 -0.32 9.15 16 23 H 0.09 1.46 7.98 -51.93 -0.41 1.04 16 24 H 0.05 0.78 8.12 -51.93 -0.42 0.36 16 25 H 0.08 0.89 8.01 -51.93 -0.42 0.47 16 26 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 27 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 29 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.11 2.22 6.06 -51.93 -0.31 1.91 16 LS Contribution 269.58 15.07 4.06 4.06 Total: -1.00 -30.57 269.58 -6.37 -36.94 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: -4.36 Total: 7.12 kcal Atomic # 6 Polarization: 3.23 SS G_CDS: -0.81 Total: 2.42 kcal Atomic # 7 Polarization: -47.34 SS G_CDS: -0.36 Total: -47.70 kcal Atomic # 8 Polarization: -15.56 SS G_CDS: 0.08 Total: -15.48 kcal Atomic # 9 Polarization: -3.49 SS G_CDS: 0.04 Total: -3.45 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -30.57 -6.37 -36.94 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000902998356.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.061 kcal (2) G-P(sol) polarization free energy of solvation -30.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds