Wall clock time and date at job start Sun Mar 29 2020 21:30:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86796 * 120.00105 * 2 1 4 4 H 1.48497 * 109.47405 * 239.99828 * 3 2 1 5 5 H 1.48502 * 109.46925 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47235 * 119.99285 * 3 2 1 7 7 C 1.38952 * 120.00179 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00220 * 179.73087 * 7 2 1 9 9 N 1.37097 * 119.99863 * 0.02562 * 7 2 1 10 10 C 1.34778 * 120.00339 * 179.72377 * 9 7 2 11 11 O 1.21298 * 119.99479 * 359.97438 * 10 9 7 12 12 C 1.50702 * 120.00293 * 179.97438 * 10 9 7 13 13 N 1.46899 * 109.47159 * 173.73024 * 12 10 9 14 14 C 1.46845 * 111.00196 * 169.40085 * 13 12 10 15 15 C 1.53036 * 109.52425 * 185.84200 * 14 13 12 16 16 C 1.53126 * 109.27744 * 300.81731 * 15 14 13 17 17 C 1.53120 * 109.15779 * 57.65511 * 16 15 14 18 18 H 1.09005 * 109.53641 * 62.31014 * 17 16 15 19 19 F 1.39901 * 109.50045 * 182.40392 * 17 16 15 20 20 C 1.46849 * 111.00066 * 293.61282 * 13 12 10 21 21 H 0.96995 * 120.00473 * 0.02562 * 1 2 3 22 22 H 0.97005 * 120.00513 * 359.71758 * 9 7 2 23 23 H 1.08995 * 109.46728 * 293.73009 * 12 10 9 24 24 H 1.09000 * 109.47025 * 53.72903 * 12 10 9 25 25 H 1.09002 * 109.45673 * 305.85587 * 14 13 12 26 26 H 1.08993 * 109.46476 * 65.82109 * 14 13 12 27 27 H 1.08993 * 109.50445 * 180.87928 * 15 14 13 28 28 H 1.08998 * 109.53672 * 60.77495 * 15 14 13 29 29 H 1.09002 * 109.51951 * 297.75500 * 16 15 14 30 30 H 1.08994 * 109.57320 * 177.59301 * 16 15 14 31 31 H 1.09001 * 109.45917 * 294.17472 * 20 13 12 32 32 H 1.09005 * 109.46529 * 54.14984 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6964 -1.2124 5 1 1.2831 2.7464 -0.0006 6 1 3.1017 1.6964 1.2126 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2034 -0.0039 9 7 1.3234 -2.3906 0.0005 10 6 1.9972 -3.5579 -0.0046 11 8 3.2102 -3.5578 -0.0096 12 6 1.2437 -4.8630 -0.0040 13 7 2.1905 -5.9751 -0.1614 14 6 1.5329 -7.2649 0.0844 15 6 2.5759 -8.3844 0.0554 16 6 3.2681 -8.3954 -1.3104 17 6 3.9034 -7.0252 -1.5627 18 1 4.6648 -6.8317 -0.8070 19 9 4.4910 -7.0096 -2.8323 20 6 2.8220 -5.9450 -1.4868 21 1 -0.4850 0.8400 -0.0004 22 1 0.3534 -2.3907 0.0043 23 1 0.7079 -4.9726 0.9388 24 1 0.5321 -4.8720 -0.8296 25 1 1.0482 -7.2452 1.0605 26 1 0.7856 -7.4446 -0.6884 27 1 2.0852 -9.3433 0.2223 28 1 3.3160 -8.2134 0.8371 29 1 2.5345 -8.6056 -2.0888 30 1 4.0415 -9.1632 -1.3217 31 1 2.0687 -6.1310 -2.2523 32 1 3.2737 -4.9668 -1.6518 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000902998356.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:30:13 Heat of formation + Delta-G solvation = -112.949062 kcal Electronic energy + Delta-G solvation = -16299.898588 eV Core-core repulsion = 13401.400754 eV Total energy + Delta-G solvation = -2898.497835 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.117 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -48.68473 -40.58014 -38.96328 -35.97237 -34.21886 -33.24099 -31.27715 -29.03464 -26.54585 -24.28160 -23.80199 -21.08854 -20.95377 -19.89094 -17.78673 -17.37681 -17.10477 -16.56868 -16.50292 -15.91237 -15.74951 -15.45571 -15.21053 -14.74923 -14.12801 -13.88359 -13.54776 -13.48470 -13.25870 -12.98756 -12.63717 -12.43915 -12.18035 -12.12850 -11.85043 -11.52907 -11.47943 -11.26314 -10.29900 -10.00701 -9.28527 -8.46888 -5.95634 1.39369 1.41203 1.52100 2.04981 2.27830 2.64465 3.19610 3.27221 3.55978 3.66388 3.82261 3.95329 4.13703 4.28074 4.31371 4.44336 4.53198 4.58239 4.68063 4.77473 4.89810 4.95620 5.05883 5.12504 5.37265 5.40387 5.83728 6.02766 6.17285 6.60410 7.12650 7.56063 8.12197 8.70326 Molecular weight = 230.12amu Principal moments of inertia in cm(-1) A = 0.046010 B = 0.005827 C = 0.005389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.423041 B = 4804.298497 C = 5194.865456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.012 4.012 3 Si 0.992 3.008 4 H -0.274 1.274 5 H -0.269 1.269 6 H -0.271 1.271 7 C -0.335 4.335 8 H 0.078 0.922 9 N -0.574 5.574 10 C 0.438 3.562 11 O -0.616 6.616 12 C 0.059 3.941 13 N -0.530 5.530 14 C 0.046 3.954 15 C -0.107 4.107 16 C -0.137 4.137 17 C 0.093 3.907 18 H 0.083 0.917 19 F -0.227 7.227 20 C 0.035 3.965 21 H 0.278 0.722 22 H 0.396 0.604 23 H 0.119 0.881 24 H 0.067 0.933 25 H 0.095 0.905 26 H 0.046 0.954 27 H 0.107 0.893 28 H 0.070 0.930 29 H 0.077 0.923 30 H 0.091 0.909 31 H 0.042 0.958 32 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.715 -15.255 -0.535 15.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.212 4.212 3 Si 0.816 3.184 4 H -0.199 1.199 5 H -0.194 1.194 6 H -0.197 1.197 7 C -0.464 4.464 8 H 0.096 0.904 9 N -0.211 5.211 10 C 0.225 3.775 11 O -0.502 6.502 12 C -0.072 4.072 13 N -0.255 5.255 14 C -0.081 4.081 15 C -0.145 4.145 16 C -0.175 4.175 17 C 0.057 3.943 18 H 0.101 0.899 19 F -0.208 7.208 20 C -0.094 4.094 21 H 0.087 0.913 22 H 0.230 0.770 23 H 0.137 0.863 24 H 0.085 0.915 25 H 0.113 0.887 26 H 0.064 0.936 27 H 0.125 0.875 28 H 0.089 0.911 29 H 0.096 0.904 30 H 0.110 0.890 31 H 0.060 0.940 32 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.319 -15.048 -0.217 15.053 hybrid contribution -0.628 1.180 -0.776 1.545 sum -0.309 -13.868 -0.993 13.907 Atomic orbital electron populations 1.69659 1.06799 1.29371 1.50297 1.26018 0.96538 1.02346 0.96248 0.85001 0.77781 0.76723 0.78904 1.19887 1.19371 1.19668 1.19618 0.92668 0.84069 1.50053 0.90434 1.41936 1.09306 1.04682 1.65212 1.20836 0.88348 0.86012 0.82275 1.90483 1.15768 1.87829 1.56137 1.21747 0.93192 0.88245 1.03984 1.61336 1.32415 1.03004 1.28766 1.22383 0.96075 0.87224 1.02387 1.21534 0.98185 0.98745 0.95988 1.22165 1.01304 0.94450 0.99535 1.21627 0.95121 0.97388 0.80197 0.89893 1.92757 1.86044 1.97732 1.44253 1.22522 0.96938 0.99749 0.90164 0.91273 0.76993 0.86300 0.91542 0.88688 0.93599 0.87453 0.91129 0.90428 0.89024 0.94003 0.92245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.90 13.05 21.66 0.28 -49.62 16 2 C -0.01 -0.63 5.50 84.93 0.47 -0.16 16 3 Si 0.99 43.34 29.55 68.60 2.03 45.37 16 4 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 5 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 6 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 7 C -0.33 -19.21 9.68 84.04 0.81 -18.40 16 8 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16 9 N -0.57 -29.72 5.29 -306.97 -1.62 -31.34 16 10 C 0.44 21.07 7.31 87.66 0.64 21.71 16 11 O -0.62 -34.57 14.29 -3.09 -0.04 -34.61 16 12 C 0.06 2.04 5.45 85.56 0.47 2.51 16 13 N -0.53 -16.91 4.35 -900.94 -3.92 -20.83 16 14 C 0.05 0.99 5.46 86.33 0.47 1.46 16 15 C -0.11 -1.87 6.09 30.65 0.19 -1.68 16 16 C -0.14 -2.73 5.74 30.68 0.18 -2.55 16 17 C 0.09 2.70 4.04 30.65 0.12 2.82 16 18 H 0.08 2.54 8.14 -2.38 -0.02 2.52 16 19 F -0.23 -7.30 17.09 44.97 0.77 -6.54 16 20 C 0.04 1.19 4.85 86.32 0.42 1.61 16 21 H 0.28 14.12 8.31 -92.71 -0.77 13.35 16 22 H 0.40 19.39 7.90 -92.70 -0.73 18.66 16 23 H 0.12 3.47 7.98 -2.39 -0.02 3.45 16 24 H 0.07 2.06 8.12 -2.39 -0.02 2.04 16 25 H 0.09 1.76 8.01 -2.39 -0.02 1.74 16 26 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.08 1.44 8.14 -2.39 -0.02 1.43 16 30 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.06 2.58 6.06 -2.38 -0.01 2.57 16 Total: -1.00 -67.70 269.58 1.65 -66.05 By element: Atomic # 1 Polarization: 23.81 SS G_CDS: 0.39 Total: 24.20 kcal Atomic # 6 Polarization: 3.56 SS G_CDS: 3.76 Total: 7.32 kcal Atomic # 7 Polarization: -96.54 SS G_CDS: -5.26 Total: -101.79 kcal Atomic # 8 Polarization: -34.57 SS G_CDS: -0.04 Total: -34.61 kcal Atomic # 9 Polarization: -7.30 SS G_CDS: 0.77 Total: -6.54 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Total: -67.70 1.65 -66.05 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000902998356.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.903 kcal (2) G-P(sol) polarization free energy of solvation -67.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds