Wall clock time and date at job start Sun Mar 29 2020 21:30:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86799 * 120.00131 * 2 1 4 4 H 1.48495 * 109.47122 * 269.99789 * 3 2 1 5 5 H 1.48502 * 109.47085 * 30.00135 * 3 2 1 6 6 H 1.48503 * 109.47216 * 149.99711 * 3 2 1 7 7 C 1.38946 * 119.99652 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99800 * 180.02562 * 7 2 1 9 9 N 1.37097 * 120.00491 * 0.02562 * 7 2 1 10 10 C 1.34770 * 120.00463 * 180.02562 * 9 7 2 11 11 O 1.21294 * 119.99829 * 359.97438 * 10 9 7 12 12 C 1.50699 * 120.00205 * 180.02562 * 10 9 7 13 13 N 1.46900 * 109.47311 * 173.77887 * 12 10 9 14 14 C 1.46849 * 110.99900 * 293.64084 * 13 12 10 15 15 C 1.53037 * 109.52505 * 174.16315 * 14 13 12 16 16 C 1.53114 * 109.27984 * 59.17661 * 15 14 13 17 17 C 1.53129 * 109.16013 * 302.34625 * 16 15 14 18 18 H 1.08997 * 109.50484 * 297.71279 * 17 16 15 19 19 F 1.39904 * 109.49867 * 177.59680 * 17 16 15 20 20 C 1.46851 * 111.00411 * 169.42992 * 13 12 10 21 21 H 0.97002 * 119.99853 * 359.97438 * 1 2 3 22 22 H 0.97005 * 119.99312 * 359.97438 * 9 7 2 23 23 H 1.08994 * 109.47579 * 53.77467 * 12 10 9 24 24 H 1.09007 * 109.46803 * 293.77492 * 12 10 9 25 25 H 1.09003 * 109.46123 * 294.17453 * 14 13 12 26 26 H 1.09002 * 109.46230 * 54.14332 * 14 13 12 27 27 H 1.08997 * 109.50275 * 179.11818 * 15 14 13 28 28 H 1.09003 * 109.50038 * 299.23441 * 15 14 13 29 29 H 1.09000 * 109.52537 * 182.44733 * 16 15 14 30 30 H 1.08990 * 109.52378 * 62.25131 * 16 15 14 31 31 H 1.09000 * 109.45812 * 305.85518 * 20 13 12 32 32 H 1.09006 * 109.46044 * 65.82739 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0463 -1.4000 5 1 1.4457 2.6527 0.7001 6 1 3.5457 1.4401 0.7001 7 6 2.0088 -1.2033 0.0005 8 1 3.0888 -1.2034 0.0010 9 7 1.3234 -2.3907 0.0005 10 6 1.9971 -3.5578 0.0016 11 8 3.2101 -3.5579 0.0021 12 6 1.2436 -4.8629 0.0010 13 7 2.1913 -5.9755 -0.1477 14 6 2.8313 -5.9485 -1.4691 15 6 3.9130 -7.0290 -1.5357 16 6 3.2759 -8.3984 -1.2844 17 6 2.5749 -8.3844 0.0770 18 1 3.3099 -8.2110 0.8630 19 9 1.9437 -9.6146 0.2899 20 6 1.5320 -7.2647 0.0967 21 1 -0.4850 0.8401 0.0004 22 1 0.3533 -2.3906 0.0005 23 1 0.5370 -4.8742 -0.8288 24 1 0.7021 -4.9701 0.9409 25 1 2.0829 -6.1361 -2.2391 26 1 3.2840 -4.9706 -1.6335 27 1 4.3771 -7.0190 -2.5218 28 1 4.6691 -6.8342 -0.7750 29 1 4.0495 -9.1663 -1.2877 30 1 2.5475 -8.6104 -2.0669 31 1 1.0410 -7.2428 1.0696 32 1 0.7897 -7.4462 -0.6807 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000902998357.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:30:16 Heat of formation + Delta-G solvation = -112.116639 kcal Electronic energy + Delta-G solvation = -16220.818479 eV Core-core repulsion = 13322.356741 eV Total energy + Delta-G solvation = -2898.461738 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.117 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -48.64483 -40.58711 -38.94865 -35.94734 -34.27121 -33.21851 -31.27392 -29.01516 -26.54032 -24.12580 -23.98681 -21.12969 -20.91773 -19.87494 -17.85034 -17.36176 -16.95327 -16.55850 -16.32238 -15.97222 -15.78969 -15.63102 -15.11672 -14.68563 -14.19465 -13.94162 -13.50092 -13.43602 -13.34927 -12.97255 -12.62580 -12.41065 -12.17873 -12.11683 -11.85936 -11.57356 -11.41044 -11.26090 -10.29010 -9.99415 -9.29422 -8.45882 -5.94498 1.38599 1.42535 1.55208 2.05839 2.27739 2.60740 3.21044 3.34700 3.56428 3.64162 3.75320 3.96586 4.12544 4.27609 4.35537 4.41230 4.49460 4.55283 4.66118 4.74018 4.87736 4.91747 5.05606 5.16786 5.35436 5.41849 5.84298 6.05258 6.13492 6.61307 7.13815 7.57223 8.12849 8.71636 Molecular weight = 230.12amu Principal moments of inertia in cm(-1) A = 0.062796 B = 0.005282 C = 0.005028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 445.782107 B = 5299.933119 C = 5567.003708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.013 4.013 3 Si 0.993 3.007 4 H -0.271 1.271 5 H -0.272 1.272 6 H -0.273 1.273 7 C -0.332 4.332 8 H 0.079 0.921 9 N -0.575 5.575 10 C 0.442 3.558 11 O -0.612 6.612 12 C 0.058 3.942 13 N -0.530 5.530 14 C 0.049 3.951 15 C -0.105 4.105 16 C -0.137 4.137 17 C 0.095 3.905 18 H 0.093 0.907 19 F -0.219 7.219 20 C 0.033 3.967 21 H 0.277 0.723 22 H 0.396 0.604 23 H 0.068 0.932 24 H 0.112 0.888 25 H 0.037 0.963 26 H 0.061 0.939 27 H 0.090 0.910 28 H 0.064 0.936 29 H 0.091 0.909 30 H 0.077 0.923 31 H 0.092 0.908 32 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.927 -13.665 -2.374 13.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.212 4.212 3 Si 0.816 3.184 4 H -0.196 1.196 5 H -0.196 1.196 6 H -0.198 1.198 7 C -0.461 4.461 8 H 0.097 0.903 9 N -0.212 5.212 10 C 0.229 3.771 11 O -0.498 6.498 12 C -0.073 4.073 13 N -0.255 5.255 14 C -0.079 4.079 15 C -0.142 4.142 16 C -0.175 4.175 17 C 0.058 3.942 18 H 0.111 0.889 19 F -0.200 7.200 20 C -0.095 4.095 21 H 0.087 0.913 22 H 0.229 0.771 23 H 0.086 0.914 24 H 0.130 0.870 25 H 0.055 0.945 26 H 0.080 0.920 27 H 0.108 0.892 28 H 0.083 0.917 29 H 0.110 0.890 30 H 0.096 0.904 31 H 0.111 0.889 32 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.941 -13.487 -2.015 13.774 hybrid contribution -0.917 0.910 -0.480 1.378 sum 1.025 -12.577 -2.496 12.863 Atomic orbital electron populations 1.69677 1.06858 1.29262 1.50485 1.26026 0.96513 1.02385 0.96319 0.84930 0.77889 0.76911 0.78626 1.19638 1.19632 1.19765 1.19657 0.92696 0.83956 1.49811 0.90256 1.41940 1.09310 1.04701 1.65287 1.20686 0.88308 0.85794 0.82278 1.90480 1.15563 1.87765 1.55996 1.21726 0.93317 0.88457 1.03771 1.61332 1.31233 1.01286 1.31616 1.22221 0.96955 1.00591 0.88085 1.21440 0.97281 0.92453 1.03070 1.22141 1.01104 0.98455 0.95812 1.21539 0.94102 0.78456 1.00092 0.88865 1.92784 1.84785 1.46047 1.96417 1.22641 0.95598 0.88248 1.03049 0.91338 0.77062 0.91431 0.87006 0.94452 0.92048 0.89171 0.91702 0.89000 0.90444 0.88928 0.93048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.67 13.05 21.66 0.28 -49.39 16 2 C -0.01 -0.68 5.50 84.92 0.47 -0.22 16 3 Si 0.99 42.78 29.55 68.60 2.03 44.81 16 4 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 5 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 6 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 7 C -0.33 -18.75 9.68 84.04 0.81 -17.94 16 8 H 0.08 4.77 7.16 -2.91 -0.02 4.75 16 9 N -0.57 -29.38 5.29 -307.00 -1.62 -31.00 16 10 C 0.44 20.89 7.31 87.66 0.64 21.53 16 11 O -0.61 -33.42 14.28 -3.07 -0.04 -33.47 16 12 C 0.06 2.01 5.45 85.56 0.47 2.47 16 13 N -0.53 -16.90 4.35 -900.92 -3.92 -20.82 16 14 C 0.05 1.52 5.12 86.33 0.44 1.96 16 15 C -0.10 -2.52 6.09 30.64 0.19 -2.34 16 16 C -0.14 -2.75 5.74 30.68 0.18 -2.57 16 17 C 0.09 2.14 4.04 30.65 0.12 2.26 16 18 H 0.09 2.12 8.14 -2.39 -0.02 2.11 16 19 F -0.22 -5.27 17.09 44.97 0.77 -4.50 16 20 C 0.03 0.81 5.20 86.32 0.45 1.26 16 21 H 0.28 13.99 8.31 -92.71 -0.77 13.22 16 22 H 0.40 19.23 7.90 -92.70 -0.73 18.50 16 23 H 0.07 2.08 8.12 -2.39 -0.02 2.07 16 24 H 0.11 3.39 7.98 -2.38 -0.02 3.37 16 25 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.06 2.42 6.05 -2.39 -0.01 2.40 16 27 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 28 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 29 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.09 2.12 8.01 -2.39 -0.02 2.10 16 32 H 0.05 1.18 8.14 -2.38 -0.02 1.16 16 Total: -1.00 -64.53 269.57 1.65 -62.88 By element: Atomic # 1 Polarization: 24.67 SS G_CDS: 0.39 Total: 25.06 kcal Atomic # 6 Polarization: 2.67 SS G_CDS: 3.76 Total: 6.43 kcal Atomic # 7 Polarization: -95.95 SS G_CDS: -5.26 Total: -101.21 kcal Atomic # 8 Polarization: -33.42 SS G_CDS: -0.04 Total: -33.47 kcal Atomic # 9 Polarization: -5.27 SS G_CDS: 0.77 Total: -4.50 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.81 kcal Total: -64.53 1.65 -62.88 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000902998357.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.241 kcal (2) G-P(sol) polarization free energy of solvation -64.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds