Wall clock time and date at job start Sun Mar 29 2020 21:40:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53008 * 109.47054 * 2 1 4 4 F 1.39898 * 109.47254 * 240.00534 * 2 1 3 5 5 C 1.50705 * 109.47466 * 120.00200 * 2 1 3 6 6 O 1.21279 * 119.99527 * 355.00405 * 5 2 1 7 7 N 1.34770 * 119.99724 * 174.99927 * 5 2 1 8 8 C 1.46501 * 119.99678 * 180.02562 * 7 5 2 9 9 C 1.53495 * 114.20743 * 205.00169 * 8 7 5 10 10 N 1.47066 * 87.98658 * 220.14538 * 9 8 7 11 11 C 1.36937 * 136.06113 * 206.85859 * 10 9 8 12 12 H 1.07995 * 120.00001 * 0.02562 * 11 10 9 13 13 C 1.38817 * 120.00320 * 179.97438 * 11 10 9 14 14 N 1.31620 * 119.99557 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 119.99975 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47441 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.47001 * 120.00359 * 15 13 11 18 18 H 1.48499 * 109.47209 * 240.00202 * 15 13 11 19 19 C 1.47067 * 87.88528 * 27.11900 * 10 9 8 20 20 H 1.09004 * 109.46830 * 299.99684 * 1 2 3 21 21 H 1.09000 * 109.47433 * 59.99206 * 1 2 3 22 22 H 1.09001 * 109.46830 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.46863 * 179.97438 * 3 2 1 24 24 H 1.08994 * 109.47287 * 300.00509 * 3 2 1 25 25 H 1.09000 * 109.46618 * 60.00718 * 3 2 1 26 26 H 0.96992 * 120.00585 * 0.02562 * 7 5 2 27 27 H 1.09006 * 113.28128 * 338.06706 * 8 7 5 28 28 H 1.09005 * 113.46950 * 105.37104 * 9 8 7 29 29 H 1.08994 * 113.52293 * 334.93589 * 9 8 7 30 30 H 0.96999 * 119.99537 * 179.97438 * 14 13 11 31 31 H 1.09007 * 113.46858 * 87.65629 * 19 10 9 32 32 H 1.08993 * 113.47208 * 218.09965 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 9 1.9963 -0.6594 -1.1423 5 6 2.0324 -0.7105 1.2304 6 8 1.2480 -1.0915 2.0733 7 7 3.3533 -0.9224 1.3940 8 6 3.8416 -1.6135 2.5899 9 6 5.2917 -1.2763 2.9636 10 7 5.4820 -2.6966 3.2944 11 6 6.2925 -3.4136 4.1336 12 1 7.0119 -2.9028 4.7564 13 6 6.1888 -4.7969 4.1846 14 7 5.3117 -5.4194 3.4259 15 14 7.2940 -5.7748 5.3299 16 1 8.1855 -4.8461 6.0700 17 1 6.4588 -6.5334 6.2954 18 1 8.1158 -6.7224 4.5350 19 6 4.4233 -3.0086 2.3225 20 1 -0.3633 0.5138 0.8901 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 3.1300 1.4425 0.0005 24 1 1.6766 1.9564 -0.8899 25 1 1.6767 1.9563 0.8901 26 1 3.9805 -0.6174 0.7201 27 1 3.1436 -1.5731 3.4261 28 1 5.3751 -0.6149 3.8260 29 1 5.8928 -0.9434 2.1176 30 1 5.2394 -6.3861 3.4613 31 1 4.7923 -3.1373 1.3050 32 1 3.7683 -3.8200 2.6397 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001030049192.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:01 Heat of formation + Delta-G solvation = -55.745216 kcal Electronic energy + Delta-G solvation = -16273.367215 eV Core-core repulsion = 13377.349925 eV Total energy + Delta-G solvation = -2896.017290 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.117 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -48.92854 -41.12319 -39.48809 -35.28937 -34.63420 -33.75298 -29.62823 -28.32444 -26.47664 -25.96169 -23.98368 -21.54817 -21.03024 -18.93949 -18.74176 -17.63641 -17.07617 -16.85815 -16.20233 -15.92116 -15.71570 -15.35021 -14.56814 -14.19844 -13.91800 -13.41633 -13.37418 -13.25202 -13.21092 -13.08073 -12.99578 -12.86260 -12.72456 -12.30359 -11.98542 -11.93530 -11.45519 -10.95786 -10.84493 -10.03444 -9.03103 -7.96099 -5.32473 1.33045 1.44854 1.47032 1.57537 1.92084 2.46144 3.21485 3.26606 3.44099 3.48209 3.68343 3.73299 3.85104 4.23959 4.45138 4.64393 4.69048 4.70038 4.72854 4.84181 4.98684 5.05356 5.13537 5.16988 5.19636 5.42006 5.60212 5.84006 6.40165 6.82901 7.05055 7.53299 8.50422 9.21848 Molecular weight = 230.12amu Principal moments of inertia in cm(-1) A = 0.059359 B = 0.005486 C = 0.005363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 471.595668 B = 5102.674781 C = 5219.435925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.105 3.895 3 C -0.167 4.167 4 F -0.203 7.203 5 C 0.492 3.508 6 O -0.566 6.566 7 N -0.691 5.691 8 C 0.113 3.887 9 C 0.122 3.878 10 N -0.637 5.637 11 C -0.230 4.230 12 H 0.095 0.905 13 C -0.070 4.070 14 N -0.957 5.957 15 Si 0.987 3.013 16 H -0.259 1.259 17 H -0.293 1.293 18 H -0.291 1.291 19 C 0.141 3.859 20 H 0.086 0.914 21 H 0.103 0.897 22 H 0.054 0.946 23 H 0.081 0.919 24 H 0.104 0.896 25 H 0.089 0.911 26 H 0.416 0.584 27 H 0.100 0.900 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.249 0.751 31 H 0.025 0.975 32 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.750 15.497 -8.245 18.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.083 3.917 3 C -0.224 4.224 4 F -0.184 7.184 5 C 0.277 3.723 6 O -0.445 6.445 7 N -0.341 5.341 8 C 0.007 3.993 9 C -0.004 4.004 10 N -0.363 5.363 11 C -0.358 4.358 12 H 0.113 0.887 13 C -0.263 4.263 14 N -0.606 5.606 15 Si 0.814 3.186 16 H -0.182 1.182 17 H -0.220 1.220 18 H -0.218 1.218 19 C 0.014 3.986 20 H 0.105 0.895 21 H 0.121 0.879 22 H 0.073 0.927 23 H 0.100 0.900 24 H 0.122 0.878 25 H 0.108 0.892 26 H 0.253 0.747 27 H 0.118 0.882 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.058 0.942 31 H 0.042 0.958 32 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -6.124 14.945 -7.492 17.804 hybrid contribution 0.827 -1.201 0.095 1.461 sum -5.297 13.744 -7.398 16.483 Atomic orbital electron populations 1.22203 0.90122 1.03871 1.05278 1.21353 0.97536 0.94153 0.78629 1.22427 1.03405 0.90468 1.06109 1.92910 1.90428 1.83226 1.51787 1.21573 0.82677 0.79199 0.88849 1.90710 1.56109 1.51768 1.45907 1.45807 1.07481 1.57602 1.23253 1.22995 0.95267 0.93034 0.88025 1.22814 0.91544 0.86912 0.99093 1.45597 1.43032 1.03450 1.44259 1.19426 1.12835 0.89088 1.14443 0.88717 1.25789 1.01238 0.97476 1.01824 1.70065 1.39001 1.07813 1.43709 0.84888 0.77702 0.78352 0.77633 1.18243 1.21981 1.21816 1.22460 0.89329 0.94953 0.91862 0.89539 0.87872 0.92701 0.89969 0.87765 0.89165 0.74715 0.88194 0.91734 0.91765 0.94197 0.95767 0.95115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.07 8.23 71.98 0.59 -2.48 16 2 C 0.10 2.29 1.53 -11.54 -0.02 2.28 16 3 C -0.17 -2.27 8.88 71.98 0.64 -1.63 16 4 F -0.20 -5.00 16.79 44.97 0.76 -4.24 16 5 C 0.49 15.19 6.82 87.66 0.60 15.79 16 6 O -0.57 -22.19 15.58 -3.03 -0.05 -22.24 16 7 N -0.69 -20.91 5.36 -441.93 -2.37 -23.28 16 8 C 0.11 4.42 4.60 45.46 0.21 4.63 16 9 C 0.12 4.69 8.45 83.18 0.70 5.39 16 10 N -0.64 -33.14 3.78 -738.54 -2.79 -35.93 16 11 C -0.23 -13.01 10.75 84.03 0.90 -12.11 16 12 H 0.10 5.00 7.83 -2.91 -0.02 4.97 16 13 C -0.07 -4.09 5.50 84.86 0.47 -3.62 16 14 N -0.96 -59.94 11.51 21.65 0.25 -59.69 16 15 Si 0.99 46.14 29.55 68.60 2.03 48.16 16 16 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 17 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16 18 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 19 C 0.14 7.05 7.22 83.18 0.60 7.65 16 20 H 0.09 1.63 8.05 -2.39 -0.02 1.61 16 21 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 22 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 23 H 0.08 1.00 7.92 -2.39 -0.02 0.98 16 24 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 25 H 0.09 1.11 8.14 -2.39 -0.02 1.10 16 26 H 0.42 9.99 8.54 -92.71 -0.79 9.20 16 27 H 0.10 4.31 7.45 -2.38 -0.02 4.30 16 28 H 0.06 2.28 8.14 -2.38 -0.02 2.26 16 29 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 30 H 0.25 15.09 8.31 -92.71 -0.77 14.32 16 31 H 0.02 1.22 8.14 -2.38 -0.02 1.20 16 32 H 0.03 1.79 7.12 -2.39 -0.02 1.77 16 Total: -1.00 -73.09 278.07 2.85 -70.24 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: 0.33 Total: 11.08 kcal Atomic # 6 Polarization: 11.21 SS G_CDS: 4.69 Total: 15.90 kcal Atomic # 7 Polarization: -113.99 SS G_CDS: -4.91 Total: -118.90 kcal Atomic # 8 Polarization: -22.19 SS G_CDS: -0.05 Total: -22.24 kcal Atomic # 9 Polarization: -5.00 SS G_CDS: 0.76 Total: -4.24 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 2.03 Total: 48.16 kcal Total: -73.09 2.85 -70.24 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030049192.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.495 kcal (2) G-P(sol) polarization free energy of solvation -73.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds