Wall clock time and date at job start Sun Mar 29 2020 21:46:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36935 * 120.00476 * 2 1 4 4 H 1.08002 * 120.00416 * 202.07610 * 3 2 1 5 5 C 1.38814 * 119.99706 * 22.07340 * 3 2 1 6 6 N 1.31626 * 120.00039 * 11.26944 * 5 3 2 7 7 Si 1.86804 * 120.00149 * 191.26691 * 5 3 2 8 8 H 1.48499 * 109.46994 * 89.99918 * 7 5 3 9 9 H 1.48495 * 109.47099 * 209.99996 * 7 5 3 10 10 H 1.48503 * 109.46964 * 329.99946 * 7 5 3 11 11 C 1.46504 * 119.99899 * 179.97438 * 2 1 3 12 12 C 1.50697 * 109.47419 * 270.00004 * 11 2 1 13 13 C 1.37791 * 120.11231 * 260.02095 * 12 11 2 14 14 C 1.38787 * 120.66265 * 179.97438 * 13 12 11 15 15 C 1.36663 * 120.53302 * 359.97438 * 14 13 12 16 16 C 1.39586 * 119.75867 * 359.97438 * 15 14 13 17 17 C 1.46496 * 134.02881 * 180.35578 * 16 15 14 18 18 C 1.34245 * 106.99747 * 180.09886 * 17 16 15 19 19 N 1.36835 * 109.93304 * 359.59729 * 18 17 16 20 20 H 0.97002 * 125.05893 * 180.28874 * 19 18 17 21 21 C 1.37688 * 109.88046 * 0.26366 * 19 18 17 22 22 H 1.09001 * 109.47324 * 274.49516 * 1 2 3 23 23 H 1.09000 * 109.47258 * 34.49918 * 1 2 3 24 24 H 1.09003 * 109.47202 * 154.49656 * 1 2 3 25 25 H 0.96993 * 120.00037 * 180.02562 * 6 5 3 26 26 H 1.09003 * 109.47110 * 149.99825 * 11 2 1 27 27 H 1.09004 * 109.46890 * 30.00608 * 11 2 1 28 28 H 1.07993 * 119.66465 * 359.97438 * 13 12 11 29 29 H 1.08006 * 119.73293 * 179.97438 * 14 13 12 30 30 H 1.07994 * 120.11960 * 180.02562 * 15 14 13 31 31 H 1.07995 * 126.50508 * 359.97438 * 17 16 15 32 32 H 1.07999 * 125.03332 * 179.85849 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1704 1.2201 -0.3515 5 6 1.5320 2.3440 0.4518 6 7 0.3789 2.2718 1.0825 7 14 2.3372 4.0050 0.1648 8 1 1.8755 4.5613 -1.1323 9 1 1.9633 4.9325 1.2624 10 1 3.8129 3.8413 0.1361 11 6 2.1975 -1.2688 0.0006 12 6 2.4486 -1.7032 1.4215 13 6 3.6779 -1.4843 2.0043 14 6 3.9215 -1.8792 3.3123 15 6 2.9449 -2.4924 4.0457 16 6 1.6919 -2.7231 3.4754 17 6 0.4495 -3.3304 3.9588 18 6 -0.4330 -3.2757 2.9486 19 7 0.1399 -2.6750 1.8608 20 1 -0.3038 -2.5188 1.0124 21 6 1.4398 -2.3247 2.1497 22 1 -0.3634 0.0805 1.0245 23 1 -0.3634 0.8469 -0.5821 24 1 -0.3634 -0.9275 -0.4425 25 1 -0.0529 3.0810 1.3978 26 1 3.1499 -1.1387 -0.5134 27 1 1.6084 -2.0286 -0.5130 28 1 4.4595 -1.0005 1.4375 29 1 4.8907 -1.7005 3.7541 30 1 3.1416 -2.7966 5.0631 31 1 0.2768 -3.7454 4.9408 32 1 -1.4464 -3.6467 2.9898 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001144717493.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:42 Heat of formation + Delta-G solvation = 81.030289 kcal Electronic energy + Delta-G solvation = -15853.553426 eV Core-core repulsion = 13394.236392 eV Total energy + Delta-G solvation = -2459.317034 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.62789 -36.62670 -35.37425 -32.21052 -30.47023 -29.00915 -28.27814 -25.99559 -25.49063 -22.08664 -21.14248 -20.88893 -19.53699 -17.33365 -16.59171 -15.61349 -14.90758 -14.64463 -14.04494 -13.78382 -13.38946 -13.18004 -13.02943 -12.63489 -12.07101 -11.81766 -11.28258 -11.09340 -10.99905 -10.84386 -10.62840 -10.35540 -10.28899 -10.00335 -9.87096 -8.98365 -8.57120 -7.57544 -7.10722 -6.76005 -5.74630 -3.18553 1.78350 2.33220 3.24058 3.38293 3.44081 3.45791 3.73716 4.46168 4.61134 5.22337 5.37165 5.47820 5.64140 5.67398 5.70658 5.94344 5.98884 6.14241 6.21422 6.41415 6.50369 6.54061 6.68610 6.74581 7.19696 7.24563 7.29724 7.32850 7.43372 7.64624 7.78414 7.84063 8.08552 8.36157 9.20191 9.82171 10.30444 11.30657 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.029392 B = 0.008901 C = 0.007995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.400777 B = 3144.885482 C = 3501.312881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.164 3.836 2 N -0.591 5.591 3 C -0.251 4.251 4 H 0.071 0.929 5 C 0.002 3.998 6 N -0.906 5.906 7 Si 0.907 3.093 8 H -0.288 1.288 9 H -0.291 1.291 10 H -0.278 1.278 11 C 0.181 3.819 12 C -0.083 4.083 13 C -0.100 4.100 14 C -0.142 4.142 15 C -0.097 4.097 16 C -0.115 4.115 17 C -0.216 4.216 18 C 0.044 3.956 19 N -0.588 5.588 20 H 0.412 0.588 21 C 0.114 3.886 22 H 0.030 0.970 23 H 0.048 0.952 24 H -0.011 1.011 25 H 0.252 0.748 26 H 0.057 0.943 27 H 0.039 0.961 28 H 0.117 0.883 29 H 0.111 0.889 30 H 0.110 0.890 31 H 0.137 0.863 32 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.665 -10.441 2.210 10.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.312 5.312 3 C -0.380 4.380 4 H 0.089 0.911 5 C -0.196 4.196 6 N -0.551 5.551 7 Si 0.737 3.263 8 H -0.215 1.215 9 H -0.217 1.217 10 H -0.204 1.204 11 C 0.054 3.946 12 C -0.089 4.089 13 C -0.121 4.121 14 C -0.161 4.161 15 C -0.117 4.117 16 C -0.119 4.119 17 C -0.242 4.242 18 C -0.084 4.084 19 N -0.191 5.191 20 H 0.249 0.751 21 C 0.006 3.994 22 H 0.048 0.952 23 H 0.067 0.933 24 H 0.007 0.993 25 H 0.063 0.937 26 H 0.076 0.924 27 H 0.057 0.943 28 H 0.135 0.865 29 H 0.129 0.871 30 H 0.128 0.872 31 H 0.155 0.845 32 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 0.441 -10.259 2.122 10.485 hybrid contribution 0.014 1.191 -0.145 1.200 sum 0.454 -9.068 1.977 9.292 Atomic orbital electron populations 1.20845 0.82692 0.95136 0.99378 1.44109 1.01722 1.00425 1.84950 1.19235 0.98073 0.84909 1.35815 0.91097 1.25068 0.97707 0.98659 0.98194 1.70061 1.17595 1.27066 1.40365 0.86213 0.78925 0.83921 0.77259 1.21502 1.21736 1.20375 1.19910 0.96718 0.88203 0.89805 1.20150 0.91431 0.97180 1.00150 1.20592 0.96168 1.00316 0.95051 1.20517 0.98826 1.01744 0.94991 1.20006 0.91854 1.00966 0.98840 1.19144 0.94735 1.04305 0.93757 1.21529 0.93014 1.10373 0.99282 1.21668 0.98535 1.00808 0.87341 1.41844 1.10729 1.52096 1.14390 0.75062 1.18048 0.85331 1.01020 0.94989 0.95152 0.93283 0.99280 0.93733 0.92450 0.94275 0.86477 0.87064 0.87241 0.84508 0.82090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.99 8.53 59.84 0.51 4.50 16 2 N -0.59 -14.83 2.91 -182.50 -0.53 -15.36 16 3 C -0.25 -6.91 9.68 -15.06 -0.15 -7.05 16 4 H 0.07 1.90 7.84 -52.49 -0.41 1.49 16 5 C 0.00 0.06 5.13 -17.43 -0.09 -0.03 16 6 N -0.91 -26.77 10.56 55.49 0.59 -26.18 16 7 Si 0.91 22.13 29.57 -169.99 -5.03 17.11 16 8 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 9 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 C 0.18 3.80 5.85 -5.19 -0.03 3.77 16 12 C -0.08 -1.74 5.48 -104.47 -0.57 -2.31 16 13 C -0.10 -1.98 9.64 -39.54 -0.38 -2.36 16 14 C -0.14 -2.54 9.97 -39.95 -0.40 -2.93 16 15 C -0.10 -1.74 10.05 -39.65 -0.40 -2.14 16 16 C -0.11 -2.20 6.37 -105.14 -0.67 -2.87 16 17 C -0.22 -3.51 11.08 -37.66 -0.42 -3.93 16 18 C 0.04 0.66 11.82 -16.73 -0.20 0.46 16 19 N -0.59 -10.20 6.07 -10.65 -0.06 -10.27 16 20 H 0.41 6.60 7.68 -40.82 -0.31 6.29 16 21 C 0.11 2.29 6.98 -83.99 -0.59 1.70 16 22 H 0.03 0.81 7.41 -51.93 -0.38 0.43 16 23 H 0.05 1.29 7.19 -51.93 -0.37 0.92 16 24 H -0.01 -0.23 7.08 -51.93 -0.37 -0.60 16 25 H 0.25 7.26 8.31 -40.82 -0.34 6.93 16 26 H 0.06 1.16 7.89 -51.93 -0.41 0.75 16 27 H 0.04 0.74 7.86 -51.93 -0.41 0.33 16 28 H 0.12 2.16 8.03 -52.49 -0.42 1.74 16 29 H 0.11 1.66 8.06 -52.48 -0.42 1.24 16 30 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 31 H 0.14 1.84 8.06 -52.49 -0.42 1.41 16 32 H 0.16 1.73 8.06 -52.49 -0.42 1.31 16 LS Contribution 272.53 15.07 4.11 4.11 Total: -1.00 -31.73 272.53 -8.22 -39.95 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: -3.92 Total: 3.85 kcal Atomic # 6 Polarization: -9.82 SS G_CDS: -3.38 Total: -13.20 kcal Atomic # 7 Polarization: -51.81 SS G_CDS: -0.01 Total: -51.82 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.03 Total: 17.11 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -31.73 -8.22 -39.95 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001144717493.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.983 kcal (2) G-P(sol) polarization free energy of solvation -31.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.952 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds