Wall clock time and date at job start Sun Mar 29 2020 21:46:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36935 * 120.00476 * 2 1 4 4 H 1.08002 * 120.00416 * 202.07610 * 3 2 1 5 5 C 1.38814 * 119.99706 * 22.07340 * 3 2 1 6 6 N 1.31626 * 120.00039 * 11.26944 * 5 3 2 7 7 Si 1.86804 * 120.00149 * 191.26691 * 5 3 2 8 8 H 1.48499 * 109.46994 * 89.99918 * 7 5 3 9 9 H 1.48495 * 109.47099 * 209.99996 * 7 5 3 10 10 H 1.48503 * 109.46964 * 329.99946 * 7 5 3 11 11 C 1.46504 * 119.99899 * 179.97438 * 2 1 3 12 12 C 1.50697 * 109.47419 * 270.00004 * 11 2 1 13 13 C 1.37791 * 120.11231 * 260.02095 * 12 11 2 14 14 C 1.38787 * 120.66265 * 179.97438 * 13 12 11 15 15 C 1.36663 * 120.53302 * 359.97438 * 14 13 12 16 16 C 1.39586 * 119.75867 * 359.97438 * 15 14 13 17 17 C 1.46496 * 134.02881 * 180.35578 * 16 15 14 18 18 C 1.34245 * 106.99747 * 180.09886 * 17 16 15 19 19 N 1.36835 * 109.93304 * 359.59729 * 18 17 16 20 20 H 0.97002 * 125.05893 * 180.28874 * 19 18 17 21 21 C 1.37688 * 109.88046 * 0.26366 * 19 18 17 22 22 H 1.09001 * 109.47324 * 274.49516 * 1 2 3 23 23 H 1.09000 * 109.47258 * 34.49918 * 1 2 3 24 24 H 1.09003 * 109.47202 * 154.49656 * 1 2 3 25 25 H 0.96993 * 120.00037 * 180.02562 * 6 5 3 26 26 H 1.09003 * 109.47110 * 149.99825 * 11 2 1 27 27 H 1.09004 * 109.46890 * 30.00608 * 11 2 1 28 28 H 1.07993 * 119.66465 * 359.97438 * 13 12 11 29 29 H 1.08006 * 119.73293 * 179.97438 * 14 13 12 30 30 H 1.07994 * 120.11960 * 180.02562 * 15 14 13 31 31 H 1.07995 * 126.50508 * 359.97438 * 17 16 15 32 32 H 1.07999 * 125.03332 * 179.85849 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1704 1.2201 -0.3515 5 6 1.5320 2.3440 0.4518 6 7 0.3789 2.2718 1.0825 7 14 2.3372 4.0050 0.1648 8 1 1.8755 4.5613 -1.1323 9 1 1.9633 4.9325 1.2624 10 1 3.8129 3.8413 0.1361 11 6 2.1975 -1.2688 0.0006 12 6 2.4486 -1.7032 1.4215 13 6 3.6779 -1.4843 2.0043 14 6 3.9215 -1.8792 3.3123 15 6 2.9449 -2.4924 4.0457 16 6 1.6919 -2.7231 3.4754 17 6 0.4495 -3.3304 3.9588 18 6 -0.4330 -3.2757 2.9486 19 7 0.1399 -2.6750 1.8608 20 1 -0.3038 -2.5188 1.0124 21 6 1.4398 -2.3247 2.1497 22 1 -0.3634 0.0805 1.0245 23 1 -0.3634 0.8469 -0.5821 24 1 -0.3634 -0.9275 -0.4425 25 1 -0.0529 3.0810 1.3978 26 1 3.1499 -1.1387 -0.5134 27 1 1.6084 -2.0286 -0.5130 28 1 4.4595 -1.0005 1.4375 29 1 4.8907 -1.7005 3.7541 30 1 3.1416 -2.7966 5.0631 31 1 0.2768 -3.7454 4.9408 32 1 -1.4464 -3.6467 2.9898 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001144717493.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:42 Heat of formation + Delta-G solvation = 62.587705 kcal Electronic energy + Delta-G solvation = -15854.353157 eV Core-core repulsion = 13394.236392 eV Total energy + Delta-G solvation = -2460.116764 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.97120 -38.15645 -37.10222 -33.97745 -32.19910 -30.46202 -29.62925 -27.95172 -27.23910 -23.80386 -22.56528 -22.39661 -20.93287 -18.93861 -18.41735 -17.04403 -16.71627 -16.10832 -15.67438 -15.48885 -14.98551 -14.75051 -14.71406 -13.92370 -13.70447 -13.28355 -13.07359 -12.89443 -12.64922 -12.53762 -12.30659 -12.12377 -12.04443 -11.85439 -11.62769 -10.66415 -10.37738 -8.97694 -8.86038 -8.38948 -7.84770 -5.31104 0.38944 0.89629 1.44849 1.45348 1.54244 1.96776 2.46160 2.49871 3.10726 3.32097 3.84201 3.98333 4.14403 4.19245 4.37658 4.51539 4.59258 4.69187 4.74892 4.89551 4.95360 5.09341 5.24380 5.30921 5.33273 5.59086 5.67760 5.78698 5.86139 5.98278 6.02951 6.29647 6.46031 6.81014 7.12893 7.82984 8.26048 9.18840 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.029392 B = 0.008901 C = 0.007995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.400777 B = 3144.885482 C = 3501.312881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.182 3.818 2 N -0.606 5.606 3 C -0.255 4.255 4 H 0.073 0.927 5 C -0.054 4.054 6 N -0.939 5.939 7 Si 0.968 3.032 8 H -0.284 1.284 9 H -0.298 1.298 10 H -0.268 1.268 11 C 0.183 3.817 12 C -0.109 4.109 13 C -0.117 4.117 14 C -0.150 4.150 15 C -0.100 4.100 16 C -0.139 4.139 17 C -0.231 4.231 18 C 0.054 3.946 19 N -0.592 5.592 20 H 0.416 0.584 21 C 0.085 3.915 22 H 0.001 0.999 23 H 0.019 0.981 24 H 0.028 0.972 25 H 0.246 0.754 26 H 0.061 0.939 27 H 0.058 0.942 28 H 0.120 0.880 29 H 0.139 0.861 30 H 0.138 0.862 31 H 0.165 0.835 32 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.810 -11.561 2.818 11.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.328 5.328 3 C -0.386 4.386 4 H 0.091 0.909 5 C -0.249 4.249 6 N -0.586 5.586 7 Si 0.796 3.204 8 H -0.211 1.211 9 H -0.225 1.225 10 H -0.192 1.192 11 C 0.057 3.943 12 C -0.114 4.114 13 C -0.138 4.138 14 C -0.169 4.169 15 C -0.119 4.119 16 C -0.144 4.144 17 C -0.256 4.256 18 C -0.072 4.072 19 N -0.195 5.195 20 H 0.253 0.747 21 C -0.023 4.023 22 H 0.019 0.981 23 H 0.038 0.962 24 H 0.046 0.954 25 H 0.055 0.945 26 H 0.079 0.921 27 H 0.077 0.923 28 H 0.138 0.862 29 H 0.157 0.843 30 H 0.156 0.844 31 H 0.182 0.818 32 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 0.612 -11.420 2.722 11.756 hybrid contribution -0.020 1.382 -0.311 1.417 sum 0.592 -10.038 2.411 10.341 Atomic orbital electron populations 1.20533 0.82657 0.95733 0.97357 1.44258 1.02041 1.01201 1.85291 1.19549 0.98145 0.86153 1.34718 0.90898 1.25792 0.98486 1.01854 0.98741 1.70239 1.19045 1.27199 1.42085 0.85249 0.78545 0.79857 0.76735 1.21096 1.22519 1.19223 1.19964 0.96738 0.86967 0.90631 1.20135 0.92555 0.98925 0.99768 1.20847 0.96186 1.00569 0.96154 1.20838 1.00260 1.01385 0.94369 1.20432 0.91417 0.99974 1.00088 1.19702 0.96267 1.04620 0.93836 1.21935 0.91984 1.10708 1.00929 1.22448 1.00069 0.98770 0.85958 1.41971 1.10055 1.52160 1.15270 0.74669 1.18283 0.86373 1.01858 0.95782 0.98079 0.96230 0.95394 0.94519 0.92098 0.92333 0.86184 0.84295 0.84421 0.81768 0.77628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.91 8.53 127.77 1.09 9.99 16 2 N -0.61 -30.47 2.91 -731.30 -2.13 -32.60 16 3 C -0.26 -14.15 9.68 84.03 0.81 -13.33 16 4 H 0.07 3.91 7.84 -2.91 -0.02 3.89 16 5 C -0.05 -3.08 5.13 84.86 0.44 -2.64 16 6 N -0.94 -56.67 10.56 21.65 0.23 -56.45 16 7 Si 0.97 45.96 29.57 68.60 2.03 47.99 16 8 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 9 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 10 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 11 C 0.18 7.61 5.85 85.63 0.50 8.11 16 12 C -0.11 -4.50 5.48 -19.77 -0.11 -4.61 16 13 C -0.12 -4.57 9.64 22.30 0.21 -4.35 16 14 C -0.15 -5.15 9.97 22.03 0.22 -4.93 16 15 C -0.10 -3.41 10.05 22.23 0.22 -3.18 16 16 C -0.14 -5.13 6.37 -20.20 -0.13 -5.26 16 17 C -0.23 -6.87 11.08 23.51 0.26 -6.61 16 18 C 0.05 1.47 11.82 83.00 0.98 2.45 16 19 N -0.59 -19.59 6.07 -187.61 -1.14 -20.72 16 20 H 0.42 12.67 7.68 -92.71 -0.71 11.96 16 21 C 0.08 3.35 6.98 39.03 0.27 3.62 16 22 H 0.00 0.05 7.41 -2.39 -0.02 0.03 16 23 H 0.02 1.03 7.19 -2.39 -0.02 1.01 16 24 H 0.03 1.11 7.08 -2.39 -0.02 1.09 16 25 H 0.25 14.51 8.31 -92.71 -0.77 13.73 16 26 H 0.06 2.44 7.89 -2.39 -0.02 2.42 16 27 H 0.06 2.15 7.86 -2.38 -0.02 2.14 16 28 H 0.12 4.43 8.03 -2.91 -0.02 4.40 16 29 H 0.14 3.86 8.06 -2.91 -0.02 3.84 16 30 H 0.14 3.76 8.06 -2.91 -0.02 3.74 16 31 H 0.16 3.83 8.06 -2.91 -0.02 3.81 16 32 H 0.21 3.52 8.06 -2.91 -0.02 3.50 16 Total: -1.00 -68.69 272.53 4.17 -64.52 By element: Atomic # 1 Polarization: 17.60 SS G_CDS: 0.41 Total: 18.01 kcal Atomic # 6 Polarization: -25.53 SS G_CDS: 4.77 Total: -20.75 kcal Atomic # 7 Polarization: -106.73 SS G_CDS: -3.04 Total: -109.77 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 2.03 Total: 47.99 kcal Total: -68.69 4.17 -64.52 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001144717493.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.108 kcal (2) G-P(sol) polarization free energy of solvation -68.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.520 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds