Wall clock time and date at job start Sun Mar 29 2020 21:39:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.53001 * 109.47082 * 58.72246 * 3 2 1 5 5 C 1.52996 * 109.46793 * 179.97438 * 4 3 2 6 6 N 1.46499 * 109.47289 * 180.02562 * 5 4 3 7 7 C 1.39080 * 120.00694 * 179.97438 * 6 5 4 8 8 C 1.38747 * 119.65255 * 0.02562 * 7 6 5 9 9 C 1.40784 * 118.66865 * 180.24894 * 8 7 6 10 10 C 1.41549 * 120.99282 * 179.72381 * 9 8 7 11 11 H 1.07998 * 119.99898 * 23.26873 * 10 9 8 12 12 C 1.40029 * 119.99977 * 203.25842 * 10 9 8 13 13 N 1.30748 * 119.99797 * 17.06957 * 12 10 9 14 14 Si 1.86799 * 120.00245 * 197.06076 * 12 10 9 15 15 H 1.48506 * 109.46887 * 60.00169 * 14 12 10 16 16 H 1.48495 * 109.47194 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.46884 * 300.00599 * 14 12 10 18 18 C 1.41194 * 118.00981 * 359.51225 * 9 8 7 19 19 C 1.36550 * 119.14739 * 0.46774 * 18 9 8 20 20 N 1.32100 * 121.27135 * 359.77236 * 19 18 9 21 21 H 4.44650 * 5.63316 * 180.02562 * 4 1 2 22 22 H 1.09000 * 109.46949 * 298.72316 * 3 2 1 23 23 H 1.09001 * 109.47208 * 178.72493 * 3 2 1 24 24 H 1.09000 * 109.47171 * 60.00206 * 4 3 2 25 25 H 1.08997 * 109.47423 * 299.99686 * 4 3 2 26 26 H 1.09000 * 109.47734 * 60.00511 * 5 4 3 27 27 H 1.09001 * 109.47388 * 300.00180 * 5 4 3 28 28 H 0.97005 * 119.99922 * 0.02562 * 6 5 4 29 29 H 1.07993 * 120.66694 * 359.97438 * 8 7 6 30 30 H 0.96994 * 119.99925 * 180.02562 * 13 12 10 31 31 H 1.08000 * 120.42172 * 180.25861 * 18 9 8 32 32 H 1.08000 * 119.37064 * 179.78795 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1564 -0.7480 -1.2329 5 6 4.6863 -0.7468 -1.2331 6 7 5.1751 -1.4631 -2.4139 7 6 6.5425 -1.5934 -2.6318 8 6 7.4375 -1.0427 -1.7258 9 6 8.8171 -1.1823 -1.9695 10 6 9.7732 -0.6348 -1.0809 11 1 9.5065 -0.4424 -0.0522 12 6 11.0651 -0.3429 -1.5355 13 7 11.3020 -0.2533 -2.8182 14 14 12.4499 -0.0812 -0.3095 15 1 12.6261 -1.3086 0.5077 16 1 13.7089 0.2126 -1.0401 17 1 12.1154 1.0610 0.5787 18 6 9.2183 -1.8888 -3.1242 19 6 8.2639 -2.3966 -3.9584 20 7 6.9771 -2.2428 -3.7022 21 1 -1.0499 0.0001 -0.0003 22 1 3.0096 -0.4931 0.9012 23 1 3.0089 1.0282 -0.0229 24 1 2.7928 -0.2543 -2.1341 25 1 2.7936 -1.7756 -1.2100 26 1 5.0503 -1.2403 -0.3320 27 1 5.0488 0.2809 -1.2562 28 1 4.5449 -1.8459 -3.0442 29 1 7.0830 -0.5136 -0.8537 30 1 12.1969 -0.0515 -3.1332 31 1 10.2666 -2.0228 -3.3467 32 1 8.5668 -2.9346 -4.8445 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155014119.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:38 Heat of formation + Delta-G solvation = 51.571791 kcal Electronic energy + Delta-G solvation = -14592.438453 eV Core-core repulsion = 12131.844003 eV Total energy + Delta-G solvation = -2460.594450 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.31288 -37.69269 -36.07018 -35.13679 -32.60357 -32.33413 -29.78300 -27.81486 -26.84127 -23.76817 -22.74446 -22.14295 -19.50980 -18.88846 -17.71538 -16.89329 -16.59978 -16.55418 -15.92020 -15.36365 -14.91771 -14.83099 -14.37402 -14.21481 -13.82286 -13.59467 -13.14243 -12.89870 -12.71263 -12.33576 -12.22061 -11.97711 -11.73836 -11.22832 -11.13973 -10.97378 -10.61118 -9.91918 -9.83510 -8.69216 -8.22394 -6.54098 0.99358 1.20375 1.40364 1.52601 1.63362 1.86386 1.94543 2.20399 2.59499 2.82081 3.51440 3.83353 4.07020 4.13003 4.27034 4.31382 4.65390 4.69174 4.81199 4.93448 5.01049 5.06609 5.13657 5.19801 5.20901 5.27796 5.32928 5.63495 5.92495 6.13002 6.40899 6.56847 6.73138 6.87703 6.92531 7.07163 7.89600 8.28191 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.032713 B = 0.005022 C = 0.004417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.730651 B = 5573.903612 C = 6337.377862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.217 4.217 3 C -0.009 4.009 4 C -0.108 4.108 5 C 0.138 3.862 6 N -0.736 5.736 7 C 0.395 3.605 8 C -0.356 4.356 9 C 0.127 3.873 10 C -0.490 4.490 11 H 0.081 0.919 12 C 0.039 3.961 13 N -0.813 5.813 14 Si 0.988 3.012 15 H -0.259 1.259 16 H -0.266 1.266 17 H -0.257 1.257 18 C -0.272 4.272 19 C 0.116 3.884 20 N -0.637 5.637 21 H 0.244 0.756 22 H 0.099 0.901 23 H 0.098 0.902 24 H 0.071 0.929 25 H 0.073 0.927 26 H 0.056 0.944 27 H 0.052 0.948 28 H 0.398 0.602 29 H 0.107 0.893 30 H 0.292 0.708 31 H 0.112 0.888 32 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.605 1.241 5.305 11.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.217 4.217 3 C -0.046 4.046 4 C -0.146 4.146 5 C 0.014 3.986 6 N -0.371 5.371 7 C 0.163 3.837 8 C -0.383 4.383 9 C 0.119 3.881 10 C -0.520 4.520 11 H 0.099 0.901 12 C -0.179 4.179 13 N -0.438 5.438 14 Si 0.808 3.192 15 H -0.184 1.184 16 H -0.190 1.190 17 H -0.181 1.181 18 C -0.297 4.297 19 C -0.034 4.034 20 N -0.362 5.362 21 H 0.261 0.739 22 H 0.117 0.883 23 H 0.116 0.884 24 H 0.090 0.910 25 H 0.092 0.908 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.232 0.768 29 H 0.125 0.875 30 H 0.103 0.897 31 H 0.130 0.870 32 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -11.038 1.049 4.704 12.044 hybrid contribution 0.964 0.343 0.500 1.139 sum -10.074 1.392 5.203 11.424 Atomic orbital electron populations 1.25700 0.96899 1.00236 0.99802 1.23552 0.95340 1.01310 1.01492 1.18629 0.84467 1.02567 0.98949 1.21541 0.92626 1.01700 0.98710 1.21249 0.94041 0.95938 0.87390 1.44212 1.01799 1.63049 1.28089 1.18239 0.85478 0.90278 0.89725 1.21266 0.93136 1.18266 1.05665 1.18013 0.91990 0.86701 0.91355 1.19869 0.96151 1.38164 0.97860 0.90086 1.26886 1.01991 0.91421 0.97581 1.69847 1.24321 1.32882 1.16717 0.85164 0.75824 0.79960 0.78232 1.18360 1.18978 1.18114 1.21764 0.99814 1.07598 1.00558 1.21745 0.87614 0.96266 0.97775 1.66897 1.18246 1.28009 1.23000 0.73930 0.88279 0.88427 0.90994 0.90810 0.92607 0.92938 0.76760 0.87527 0.89723 0.87020 0.83892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.72 19.25 74.32 1.43 -2.29 16 2 C -0.22 -4.50 13.34 31.12 0.42 -4.09 16 3 C -0.01 -0.17 5.70 28.79 0.16 -0.01 16 4 C -0.11 -2.34 5.28 30.59 0.16 -2.18 16 5 C 0.14 4.01 4.89 86.38 0.42 4.43 16 6 N -0.74 -27.15 5.73 -345.25 -1.98 -29.12 16 7 C 0.40 18.86 7.65 132.90 1.02 19.88 16 8 C -0.36 -18.25 9.12 23.01 0.21 -18.04 16 9 C 0.13 7.11 5.61 -21.11 -0.12 6.99 16 10 C -0.49 -26.49 9.12 23.52 0.21 -26.27 16 11 H 0.08 4.17 7.90 -2.91 -0.02 4.15 16 12 C 0.04 1.92 5.20 85.29 0.44 2.36 16 13 N -0.81 -42.09 10.91 21.84 0.24 -41.85 16 14 Si 0.99 37.19 29.59 68.60 2.03 39.22 16 15 H -0.26 -9.56 7.11 99.48 0.71 -8.86 16 16 H -0.27 -9.39 7.11 99.48 0.71 -8.68 16 17 H -0.26 -9.30 7.11 99.48 0.71 -8.59 16 18 C -0.27 -14.86 8.75 22.60 0.20 -14.66 16 19 C 0.12 5.81 11.10 84.26 0.94 6.75 16 20 N -0.64 -31.81 10.37 -194.47 -2.02 -33.83 16 21 H 0.24 2.39 7.80 -4.42 -0.03 2.35 16 22 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 23 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 24 H 0.07 1.55 8.14 -2.39 -0.02 1.54 16 25 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 26 H 0.06 1.64 7.93 -2.39 -0.02 1.62 16 27 H 0.05 1.59 7.93 -2.39 -0.02 1.57 16 28 H 0.40 13.35 8.60 -92.70 -0.80 12.55 16 29 H 0.11 5.07 6.71 -2.91 -0.02 5.05 16 30 H 0.29 13.54 8.29 -92.71 -0.77 12.77 16 31 H 0.11 6.21 6.18 -2.91 -0.02 6.19 16 32 H 0.14 6.23 8.06 -2.91 -0.02 6.20 16 Total: -1.00 -64.03 284.89 4.09 -59.94 By element: Atomic # 1 Polarization: 32.44 SS G_CDS: 0.32 Total: 32.76 kcal Atomic # 6 Polarization: -32.61 SS G_CDS: 5.49 Total: -27.11 kcal Atomic # 7 Polarization: -101.04 SS G_CDS: -3.76 Total: -104.80 kcal Atomic # 14 Polarization: 37.19 SS G_CDS: 2.03 Total: 39.22 kcal Total: -64.03 4.09 -59.94 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155014119.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.512 kcal (2) G-P(sol) polarization free energy of solvation -64.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.940 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds