Wall clock time and date at job start Sun Mar 29 2020 21:47:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.37094 * 120.00656 * 2 1 4 4 H 1.07999 * 120.00406 * 202.98777 * 3 2 1 5 5 C 1.38952 * 119.99438 * 22.99051 * 3 2 1 6 6 N 1.31410 * 120.00397 * 11.15603 * 5 3 2 7 7 Si 1.86799 * 119.99579 * 191.15139 * 5 3 2 8 8 H 1.48498 * 109.47332 * 0.02562 * 7 5 3 9 9 H 1.48503 * 109.47112 * 120.00112 * 7 5 3 10 10 H 1.48503 * 109.47215 * 240.00162 * 7 5 3 11 11 C 1.34780 * 119.99409 * 180.02562 * 2 1 3 12 12 O 1.21292 * 119.99759 * 179.97438 * 11 2 1 13 13 C 1.50699 * 120.00357 * 359.97438 * 11 2 1 14 14 H 1.08998 * 109.52446 * 59.86901 * 13 11 2 15 15 C 1.53123 * 109.51994 * 299.68577 * 13 11 2 16 16 C 1.53043 * 109.27784 * 182.44194 * 15 13 11 17 17 N 1.46849 * 109.52302 * 59.17653 * 16 15 13 18 18 C 1.46844 * 111.19630 * 298.25867 * 17 16 15 19 19 C 1.53034 * 109.52694 * 61.74290 * 18 17 16 20 20 H 1.09003 * 109.53123 * 60.77752 * 19 18 17 21 21 F 1.39902 * 109.50549 * 180.87431 * 19 18 17 22 22 H 1.08996 * 109.47135 * 272.34006 * 1 2 3 23 23 H 1.09004 * 109.46767 * 32.33715 * 1 2 3 24 24 H 1.08999 * 109.47806 * 152.33292 * 1 2 3 25 25 H 0.96996 * 120.00250 * 180.02562 * 6 5 3 26 26 H 1.09001 * 109.49938 * 302.37881 * 15 13 11 27 27 H 1.08998 * 109.50476 * 62.49846 * 15 13 11 28 28 H 1.08992 * 109.46104 * 179.19271 * 16 15 13 29 29 H 1.08999 * 109.45723 * 299.16348 * 16 15 13 30 30 H 1.00900 * 110.99167 * 174.16497 * 17 16 15 31 31 H 1.09008 * 109.46426 * 301.72611 * 18 17 16 32 32 H 1.09002 * 109.46234 * 181.76069 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1506 1.1872 0.0000 4 1 3.1663 1.2243 -0.3653 5 6 1.5386 2.3428 0.4700 6 7 0.3952 2.2658 1.1130 7 14 2.3416 4.0056 0.1880 8 1 3.6134 3.8214 -0.5562 9 1 1.4272 4.8692 -0.6016 10 1 2.6221 4.6483 1.4970 11 6 2.1388 -1.1673 -0.0005 12 8 3.3517 -1.1674 -0.0010 13 6 1.3852 -2.4724 -0.0005 14 1 0.7562 -2.5298 -0.8888 15 6 0.5109 -2.5583 1.2536 16 6 -0.2048 -3.9108 1.2788 17 7 0.7889 -4.9920 1.2780 18 6 1.6092 -4.9583 0.0605 19 6 2.3791 -3.6371 -0.0012 20 1 3.0346 -3.5566 0.8660 21 9 3.1451 -3.5970 -1.1711 22 1 -0.3633 0.0420 1.0268 23 1 -0.3633 0.8683 -0.5497 24 1 -0.3635 -0.9101 -0.4772 25 1 -0.0322 3.0725 1.4408 26 1 1.1367 -2.4612 2.1408 27 1 -0.2270 -1.7563 1.2385 28 1 -0.8171 -3.9810 2.1778 29 1 -0.8409 -4.0015 0.3983 30 1 0.3449 -5.8911 1.3901 31 1 0.9645 -5.0441 -0.8143 32 1 2.3144 -5.7893 0.0746 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001160584635.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:30 Heat of formation + Delta-G solvation = -75.187492 kcal Electronic energy + Delta-G solvation = -17019.567513 eV Core-core repulsion = 14122.707143 eV Total energy + Delta-G solvation = -2896.860370 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.117 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -47.06095 -39.11437 -37.19642 -34.67887 -32.32597 -31.08871 -30.01800 -26.36651 -25.25701 -23.52889 -22.57280 -20.16250 -18.89154 -16.95322 -16.62485 -16.25393 -15.34986 -14.78504 -14.63083 -14.34773 -14.29619 -13.82604 -13.55582 -13.14131 -12.60153 -12.38524 -11.97914 -11.71245 -11.28018 -11.24346 -11.13624 -10.79308 -10.64536 -10.40619 -10.31055 -10.20964 -9.90511 -9.00276 -8.55475 -8.29728 -7.65537 -6.29731 -3.86121 3.16395 3.26705 3.34275 3.88461 4.09551 4.14586 4.64886 4.78123 5.00495 5.05799 5.16879 5.31775 5.34235 5.55634 5.59518 5.70555 5.85997 5.99382 6.08578 6.12918 6.32918 6.36734 6.61429 6.85649 6.95855 7.20374 7.29174 7.58845 8.15265 8.50809 9.21094 9.44216 10.00421 10.74302 Molecular weight = 230.12amu Principal moments of inertia in cm(-1) A = 0.043117 B = 0.007981 C = 0.007019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.234550 B = 3507.451267 C = 3988.277775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.112 3.888 2 N -0.446 5.446 3 C -0.304 4.304 4 H 0.099 0.901 5 C 0.029 3.971 6 N -0.885 5.885 7 Si 0.926 3.074 8 H -0.268 1.268 9 H -0.281 1.281 10 H -0.281 1.281 11 C 0.453 3.547 12 O -0.581 6.581 13 C -0.125 4.125 14 H 0.085 0.915 15 C -0.117 4.117 16 C 0.057 3.943 17 N -0.686 5.686 18 C 0.035 3.965 19 C 0.120 3.880 20 H 0.093 0.907 21 F -0.205 7.205 22 H 0.062 0.938 23 H 0.066 0.934 24 H 0.026 0.974 25 H 0.266 0.734 26 H 0.076 0.924 27 H 0.094 0.906 28 H 0.079 0.921 29 H 0.032 0.968 30 H 0.345 0.655 31 H 0.039 0.961 32 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.217 -10.630 -0.272 11.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.032 4.032 2 N -0.165 5.165 3 C -0.432 4.432 4 H 0.116 0.884 5 C -0.173 4.173 6 N -0.525 5.525 7 Si 0.753 3.247 8 H -0.192 1.192 9 H -0.207 1.207 10 H -0.207 1.207 11 C 0.241 3.759 12 O -0.465 6.465 13 C -0.147 4.147 14 H 0.103 0.897 15 C -0.155 4.155 16 C -0.072 4.072 17 N -0.318 5.318 18 C -0.095 4.095 19 C 0.083 3.917 20 H 0.111 0.889 21 F -0.186 7.186 22 H 0.080 0.920 23 H 0.085 0.915 24 H 0.044 0.956 25 H 0.076 0.924 26 H 0.095 0.905 27 H 0.112 0.888 28 H 0.098 0.902 29 H 0.050 0.950 30 H 0.163 0.837 31 H 0.057 0.943 32 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -4.289 -10.101 0.148 10.975 hybrid contribution -0.534 0.584 -0.801 1.126 sum -4.822 -9.517 -0.654 10.689 Atomic orbital electron populations 1.21620 0.81439 0.98566 1.01545 1.43521 1.05360 1.04666 1.62958 1.19720 0.99784 0.83923 1.39724 0.88372 1.25330 0.96545 1.00037 0.95408 1.69985 1.17551 1.29187 1.35798 0.85860 0.79288 0.81431 0.78125 1.19244 1.20717 1.20742 1.19771 0.87906 0.84463 0.83781 1.90542 1.13755 1.86896 1.55267 1.21822 0.97713 0.94998 1.00185 0.89653 1.21809 0.99489 0.96836 0.97384 1.22033 0.92988 0.91526 1.00700 1.60133 1.26356 1.07108 1.38156 1.22480 0.97174 0.98217 0.91606 1.21152 0.91495 0.93300 0.85797 0.88891 1.92796 1.77434 1.97316 1.51014 0.91978 0.91485 0.95561 0.92373 0.90492 0.88804 0.90211 0.94959 0.83704 0.94263 0.89781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.48 7.05 59.85 0.42 2.90 16 2 N -0.45 -11.61 3.02 -122.19 -0.37 -11.98 16 3 C -0.30 -8.64 9.28 -14.93 -0.14 -8.77 16 4 H 0.10 2.95 7.41 -52.49 -0.39 2.56 16 5 C 0.03 0.78 5.12 -17.47 -0.09 0.70 16 6 N -0.89 -23.55 10.63 55.50 0.59 -22.96 16 7 Si 0.93 21.06 29.57 -169.99 -5.03 16.03 16 8 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 9 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 10 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 11 C 0.45 11.41 6.93 -10.98 -0.08 11.33 16 12 O -0.58 -16.79 15.18 5.55 0.08 -16.71 16 13 C -0.13 -2.39 1.56 -91.65 -0.14 -2.53 16 14 H 0.09 1.54 7.40 -51.93 -0.38 1.15 16 15 C -0.12 -1.92 4.98 -26.65 -0.13 -2.05 16 16 C 0.06 0.70 6.55 -3.83 -0.03 0.68 16 17 N -0.69 -8.31 6.85 -113.82 -0.78 -9.09 16 18 C 0.04 0.47 6.29 -3.84 -0.02 0.45 16 19 C 0.12 2.17 2.93 -26.65 -0.08 2.09 16 20 H 0.09 1.81 8.04 -51.93 -0.42 1.39 16 21 F -0.20 -4.23 16.34 2.25 0.04 -4.19 16 22 H 0.06 1.40 6.54 -51.93 -0.34 1.06 16 23 H 0.07 1.57 7.10 -51.93 -0.37 1.20 16 24 H 0.03 0.48 5.81 -51.93 -0.30 0.18 16 25 H 0.27 6.69 8.31 -40.82 -0.34 6.35 16 26 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 27 H 0.09 1.55 4.68 -51.93 -0.24 1.31 16 28 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.34 3.16 8.90 -39.29 -0.35 2.81 16 31 H 0.04 0.50 8.14 -51.92 -0.42 0.07 16 32 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 LS Contribution 258.48 15.07 3.90 3.90 Total: -1.00 -31.84 258.48 -5.89 -37.74 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -4.04 Total: 2.49 kcal Atomic # 6 Polarization: 5.07 SS G_CDS: -0.29 Total: 4.78 kcal Atomic # 7 Polarization: -43.48 SS G_CDS: -0.56 Total: -44.04 kcal Atomic # 8 Polarization: -16.79 SS G_CDS: 0.08 Total: -16.71 kcal Atomic # 9 Polarization: -4.23 SS G_CDS: 0.04 Total: -4.19 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.03 Total: 16.03 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -31.84 -5.89 -37.74 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160584635.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.448 kcal (2) G-P(sol) polarization free energy of solvation -31.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds