Wall clock time and date at job start Sun Mar 29 2020 21:47:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.37094 * 120.00656 * 2 1 4 4 H 1.07999 * 120.00406 * 202.98777 * 3 2 1 5 5 C 1.38952 * 119.99438 * 22.99051 * 3 2 1 6 6 N 1.31410 * 120.00397 * 11.15603 * 5 3 2 7 7 Si 1.86799 * 119.99579 * 191.15139 * 5 3 2 8 8 H 1.48498 * 109.47332 * 0.02562 * 7 5 3 9 9 H 1.48503 * 109.47112 * 120.00112 * 7 5 3 10 10 H 1.48503 * 109.47215 * 240.00162 * 7 5 3 11 11 C 1.34780 * 119.99409 * 180.02562 * 2 1 3 12 12 O 1.21292 * 119.99759 * 179.97438 * 11 2 1 13 13 C 1.50699 * 120.00357 * 359.97438 * 11 2 1 14 14 H 1.08998 * 109.52446 * 59.86901 * 13 11 2 15 15 C 1.53123 * 109.51994 * 299.68577 * 13 11 2 16 16 C 1.53043 * 109.27784 * 182.44194 * 15 13 11 17 17 N 1.46849 * 109.52302 * 59.17653 * 16 15 13 18 18 C 1.46844 * 111.19630 * 298.25867 * 17 16 15 19 19 C 1.53034 * 109.52694 * 61.74290 * 18 17 16 20 20 H 1.09003 * 109.53123 * 60.77752 * 19 18 17 21 21 F 1.39902 * 109.50549 * 180.87431 * 19 18 17 22 22 H 1.08996 * 109.47135 * 272.34006 * 1 2 3 23 23 H 1.09004 * 109.46767 * 32.33715 * 1 2 3 24 24 H 1.08999 * 109.47806 * 152.33292 * 1 2 3 25 25 H 0.96996 * 120.00250 * 180.02562 * 6 5 3 26 26 H 1.09001 * 109.49938 * 302.37881 * 15 13 11 27 27 H 1.08998 * 109.50476 * 62.49846 * 15 13 11 28 28 H 1.08992 * 109.46104 * 179.19271 * 16 15 13 29 29 H 1.08999 * 109.45723 * 299.16348 * 16 15 13 30 30 H 1.00900 * 110.99167 * 174.16497 * 17 16 15 31 31 H 1.09008 * 109.46426 * 301.72611 * 18 17 16 32 32 H 1.09002 * 109.46234 * 181.76069 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1506 1.1872 0.0000 4 1 3.1663 1.2243 -0.3653 5 6 1.5386 2.3428 0.4700 6 7 0.3952 2.2658 1.1130 7 14 2.3416 4.0056 0.1880 8 1 3.6134 3.8214 -0.5562 9 1 1.4272 4.8692 -0.6016 10 1 2.6221 4.6483 1.4970 11 6 2.1388 -1.1673 -0.0005 12 8 3.3517 -1.1674 -0.0010 13 6 1.3852 -2.4724 -0.0005 14 1 0.7562 -2.5298 -0.8888 15 6 0.5109 -2.5583 1.2536 16 6 -0.2048 -3.9108 1.2788 17 7 0.7889 -4.9920 1.2780 18 6 1.6092 -4.9583 0.0605 19 6 2.3791 -3.6371 -0.0012 20 1 3.0346 -3.5566 0.8660 21 9 3.1451 -3.5970 -1.1711 22 1 -0.3633 0.0420 1.0268 23 1 -0.3633 0.8683 -0.5497 24 1 -0.3635 -0.9101 -0.4772 25 1 -0.0322 3.0725 1.4408 26 1 1.1367 -2.4612 2.1408 27 1 -0.2270 -1.7563 1.2385 28 1 -0.8171 -3.9810 2.1778 29 1 -0.8409 -4.0015 0.3983 30 1 0.3449 -5.8911 1.3901 31 1 0.9645 -5.0441 -0.8143 32 1 2.3144 -5.7893 0.0746 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001160584635.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:30 Heat of formation + Delta-G solvation = -98.984334 kcal Electronic energy + Delta-G solvation = -17020.599422 eV Core-core repulsion = 14122.707143 eV Total energy + Delta-G solvation = -2897.892279 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.117 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -48.60092 -40.84624 -38.59023 -36.72997 -34.04453 -32.80455 -31.21432 -28.28249 -27.00152 -25.12552 -23.82882 -21.52933 -20.61531 -18.96615 -18.04523 -17.89691 -16.96481 -16.41298 -16.17733 -15.94789 -15.78435 -15.49685 -14.97395 -14.66957 -14.10238 -14.06599 -13.59169 -13.24749 -13.10142 -12.99471 -12.59447 -12.52420 -12.30908 -12.15115 -11.96509 -11.75139 -11.33654 -11.00818 -10.30507 -9.70767 -9.45451 -8.35579 -6.01438 1.33732 1.38985 1.52858 1.97248 2.25548 2.93559 3.05834 3.12450 3.43877 3.66778 3.76440 3.87038 4.11474 4.20080 4.37351 4.55249 4.56488 4.64862 4.73917 4.81660 4.93556 5.00082 5.07140 5.26687 5.38892 5.42282 5.93865 6.06686 6.45709 6.53547 7.13979 7.42956 7.99475 8.66293 Molecular weight = 230.12amu Principal moments of inertia in cm(-1) A = 0.043117 B = 0.007981 C = 0.007019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.234550 B = 3507.451267 C = 3988.277775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.122 3.878 2 N -0.459 5.459 3 C -0.348 4.348 4 H 0.066 0.934 5 C 0.001 3.999 6 N -0.893 5.893 7 Si 0.989 3.011 8 H -0.278 1.278 9 H -0.263 1.263 10 H -0.273 1.273 11 C 0.437 3.563 12 O -0.632 6.632 13 C -0.116 4.116 14 H 0.104 0.896 15 C -0.112 4.112 16 C 0.064 3.936 17 N -0.692 5.692 18 C 0.050 3.950 19 C 0.112 3.888 20 H 0.068 0.932 21 F -0.223 7.223 22 H 0.057 0.943 23 H 0.050 0.950 24 H 0.066 0.934 25 H 0.275 0.725 26 H 0.052 0.948 27 H 0.092 0.908 28 H 0.104 0.896 29 H 0.053 0.947 30 H 0.368 0.632 31 H 0.057 0.943 32 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.265 -11.599 -0.149 13.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.020 4.020 2 N -0.178 5.178 3 C -0.476 4.476 4 H 0.084 0.916 5 C -0.201 4.201 6 N -0.531 5.531 7 Si 0.812 3.188 8 H -0.203 1.203 9 H -0.187 1.187 10 H -0.199 1.199 11 C 0.226 3.774 12 O -0.520 6.520 13 C -0.137 4.137 14 H 0.122 0.878 15 C -0.150 4.150 16 C -0.064 4.064 17 N -0.326 5.326 18 C -0.081 4.081 19 C 0.075 3.925 20 H 0.086 0.914 21 F -0.204 7.204 22 H 0.076 0.924 23 H 0.069 0.931 24 H 0.085 0.915 25 H 0.084 0.916 26 H 0.071 0.929 27 H 0.110 0.890 28 H 0.122 0.878 29 H 0.072 0.928 30 H 0.190 0.810 31 H 0.075 0.925 32 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -6.398 -11.095 0.284 12.810 hybrid contribution 0.122 0.916 -0.796 1.220 sum -6.275 -10.178 -0.512 11.968 Atomic orbital electron populations 1.21604 0.79208 0.99803 1.01428 1.43794 1.06845 1.04427 1.62689 1.19628 0.99481 0.86091 1.42406 0.91618 1.26052 0.97033 1.02679 0.94383 1.70036 1.17761 1.30504 1.34826 0.84949 0.78235 0.77267 0.78303 1.20277 1.18741 1.19861 1.20900 0.87846 0.86294 0.82317 1.90492 1.16253 1.87974 1.57270 1.21818 0.97887 0.91629 1.02401 0.87795 1.21777 0.98681 0.99879 0.94657 1.21987 0.92653 0.88859 1.02941 1.60026 1.26692 1.08403 1.37523 1.22318 0.97490 0.95334 0.92914 1.21356 0.91216 0.95805 0.84149 0.91416 1.92754 1.78188 1.97558 1.51926 0.92417 0.93141 0.91537 0.91554 0.92914 0.88978 0.87800 0.92834 0.81032 0.92505 0.87981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.35 7.05 127.77 0.90 6.25 16 2 N -0.46 -24.51 3.02 -658.89 -1.99 -26.49 16 3 C -0.35 -20.54 9.28 84.04 0.78 -19.76 16 4 H 0.07 4.21 7.41 -2.91 -0.02 4.18 16 5 C 0.00 0.03 5.12 84.93 0.43 0.47 16 6 N -0.89 -47.13 10.63 21.66 0.23 -46.90 16 7 Si 0.99 43.34 29.57 68.60 2.03 45.37 16 8 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 9 H -0.26 -10.71 7.11 99.48 0.71 -10.01 16 10 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 11 C 0.44 22.67 6.93 87.66 0.61 23.28 16 12 O -0.63 -38.57 15.18 -3.07 -0.05 -38.61 16 13 C -0.12 -4.34 1.56 -11.46 -0.02 -4.36 16 14 H 0.10 3.51 7.40 -2.39 -0.02 3.49 16 15 C -0.11 -3.48 4.98 30.65 0.15 -3.33 16 16 C 0.06 1.35 6.55 86.33 0.57 1.91 16 17 N -0.69 -14.21 6.85 -514.00 -3.52 -17.73 16 18 C 0.05 1.18 6.29 86.33 0.54 1.72 16 19 C 0.11 4.01 2.93 30.64 0.09 4.10 16 20 H 0.07 2.72 8.04 -2.39 -0.02 2.70 16 21 F -0.22 -9.31 16.34 44.97 0.73 -8.58 16 22 H 0.06 2.56 6.54 -2.39 -0.02 2.55 16 23 H 0.05 2.35 7.10 -2.38 -0.02 2.33 16 24 H 0.07 2.32 5.81 -2.39 -0.01 2.31 16 25 H 0.27 13.47 8.31 -92.71 -0.77 12.70 16 26 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 27 H 0.09 2.88 4.68 -2.39 -0.01 2.87 16 28 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.37 5.03 8.90 -89.69 -0.80 4.23 16 31 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16 32 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 Total: -1.00 -72.10 258.48 1.83 -70.27 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: 0.34 Total: 12.41 kcal Atomic # 6 Polarization: 6.22 SS G_CDS: 4.06 Total: 10.28 kcal Atomic # 7 Polarization: -85.85 SS G_CDS: -5.28 Total: -91.13 kcal Atomic # 8 Polarization: -38.57 SS G_CDS: -0.05 Total: -38.61 kcal Atomic # 9 Polarization: -9.31 SS G_CDS: 0.73 Total: -8.58 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Total: -72.10 1.83 -70.27 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160584635.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.719 kcal (2) G-P(sol) polarization free energy of solvation -72.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds