Wall clock time and date at job start Sun Mar 29 2020 21:47:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.37099 * 119.99592 * 2 1 4 4 H 1.07991 * 120.00437 * 139.45888 * 3 2 1 5 5 C 1.38958 * 119.99730 * 319.46053 * 3 2 1 6 6 N 1.31407 * 120.00120 * 162.31757 * 5 3 2 7 7 Si 1.86804 * 119.99923 * 342.30976 * 5 3 2 8 8 H 1.48501 * 109.47088 * 88.58417 * 7 5 3 9 9 H 1.48502 * 109.46891 * 208.57901 * 7 5 3 10 10 H 1.48500 * 109.47105 * 328.58220 * 7 5 3 11 11 C 1.34766 * 120.00310 * 179.97438 * 2 1 3 12 12 O 1.21299 * 120.00074 * 184.47366 * 11 2 1 13 13 C 1.50696 * 120.00169 * 4.19797 * 11 2 1 14 14 H 1.08999 * 109.52484 * 327.84864 * 13 11 2 15 15 C 1.53127 * 109.52176 * 87.97361 * 13 11 2 16 16 C 1.53041 * 109.27614 * 177.56247 * 15 13 11 17 17 N 1.46847 * 109.52144 * 300.81689 * 16 15 13 18 18 C 1.46845 * 111.19950 * 61.74690 * 17 16 15 19 19 C 1.53035 * 109.52451 * 298.25714 * 18 17 16 20 20 H 1.09003 * 109.50142 * 299.23658 * 19 18 17 21 21 F 1.39895 * 109.50933 * 179.12112 * 19 18 17 22 22 H 1.08992 * 109.47136 * 264.37510 * 1 2 3 23 23 H 1.08999 * 109.47157 * 24.38207 * 1 2 3 24 24 H 1.09005 * 109.46496 * 144.37781 * 1 2 3 25 25 H 0.96999 * 120.00585 * 179.97438 * 6 5 3 26 26 H 1.08996 * 109.49780 * 297.49651 * 15 13 11 27 27 H 1.08996 * 109.50396 * 57.58194 * 15 13 11 28 28 H 1.08995 * 109.46335 * 60.83203 * 16 15 13 29 29 H 1.08996 * 109.46044 * 180.81896 * 16 15 13 30 30 H 1.00901 * 111.00612 * 297.64630 * 17 16 15 31 31 H 1.09004 * 109.46334 * 58.26948 * 18 17 16 32 32 H 1.08997 * 109.46503 * 178.24916 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1505 1.1874 0.0000 4 1 3.0360 1.2998 0.6079 5 6 1.7057 2.2463 -0.7822 6 7 2.1271 3.4666 -0.5370 7 14 0.5090 1.9350 -2.1824 8 1 -0.8828 2.0138 -1.6707 9 1 0.7066 2.9593 -3.2393 10 1 0.7520 0.5845 -2.7502 11 6 2.1390 -1.1671 0.0005 12 8 3.3492 -1.1686 0.0825 13 6 1.3886 -2.4705 -0.0944 14 1 0.4203 -2.3700 0.3958 15 6 1.1811 -2.8354 -1.5670 16 6 0.4728 -4.1890 -1.6572 17 7 1.2861 -5.2138 -0.9903 18 6 1.4592 -4.9094 0.4357 19 6 2.1969 -3.5773 0.5885 20 1 3.1798 -3.6502 0.1229 21 9 2.3439 -3.2778 1.9471 22 1 -0.3633 -0.1007 1.0226 23 1 -0.3633 0.9360 -0.4242 24 1 -0.3632 -0.8354 -0.5986 25 1 1.8170 4.2058 -1.0833 26 1 0.5698 -2.0720 -2.0483 27 1 2.1480 -2.8959 -2.0667 28 1 -0.4998 -4.1231 -1.1695 29 1 0.3366 -4.4585 -2.7045 30 1 2.1789 -5.3214 -1.4481 31 1 0.4819 -4.8401 0.9136 32 1 2.0393 -5.7019 0.9085 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001160584641.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:37 Heat of formation + Delta-G solvation = -74.996238 kcal Electronic energy + Delta-G solvation = -17093.801648 eV Core-core repulsion = 14196.949571 eV Total energy + Delta-G solvation = -2896.852077 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.117 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -47.31416 -39.42635 -37.55757 -34.86106 -32.34924 -31.50378 -30.25866 -26.54494 -25.61609 -23.66207 -22.75649 -20.86174 -18.96505 -17.11003 -16.56119 -16.16842 -15.75380 -15.51644 -15.28976 -14.96397 -14.03022 -13.92971 -13.40128 -13.00424 -12.79249 -12.64574 -12.48106 -12.07010 -11.94446 -11.80756 -11.62726 -11.01914 -10.91546 -10.78001 -10.38368 -10.22154 -9.99075 -9.11997 -8.80958 -8.35752 -7.75035 -6.40751 -4.04002 2.96576 3.15243 3.18949 3.59391 4.05057 4.10878 4.23499 4.63490 4.65232 4.82832 4.92945 5.07385 5.20584 5.29951 5.37268 5.51358 5.68876 5.71282 5.78667 5.82728 5.90333 6.01380 6.08794 6.23102 6.31424 6.78320 7.15373 7.52244 8.26666 8.46241 8.91552 9.27112 9.70687 10.71367 Molecular weight = 230.12amu Principal moments of inertia in cm(-1) A = 0.037041 B = 0.009283 C = 0.008093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.737104 B = 3015.403604 C = 3459.045611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 N -0.469 5.469 3 C -0.317 4.317 4 H 0.104 0.896 5 C 0.058 3.942 6 N -0.867 5.867 7 Si 0.885 3.115 8 H -0.273 1.273 9 H -0.288 1.288 10 H -0.265 1.265 11 C 0.474 3.526 12 O -0.561 6.561 13 C -0.135 4.135 14 H 0.093 0.907 15 C -0.144 4.144 16 C 0.055 3.945 17 N -0.678 5.678 18 C 0.035 3.965 19 C 0.077 3.923 20 H 0.089 0.911 21 F -0.206 7.206 22 H 0.052 0.948 23 H 0.071 0.929 24 H 0.053 0.947 25 H 0.274 0.726 26 H 0.079 0.921 27 H 0.073 0.927 28 H 0.077 0.923 29 H 0.082 0.918 30 H 0.344 0.656 31 H 0.084 0.916 32 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.767 -13.945 -2.606 15.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 N -0.191 5.191 3 C -0.444 4.444 4 H 0.122 0.878 5 C -0.147 4.147 6 N -0.504 5.504 7 Si 0.712 3.288 8 H -0.200 1.200 9 H -0.214 1.214 10 H -0.190 1.190 11 C 0.262 3.738 12 O -0.442 6.442 13 C -0.157 4.157 14 H 0.111 0.889 15 C -0.183 4.183 16 C -0.075 4.075 17 N -0.306 5.306 18 C -0.096 4.096 19 C 0.038 3.962 20 H 0.107 0.893 21 F -0.187 7.187 22 H 0.070 0.930 23 H 0.089 0.911 24 H 0.072 0.928 25 H 0.085 0.915 26 H 0.098 0.902 27 H 0.092 0.908 28 H 0.096 0.904 29 H 0.100 0.900 30 H 0.162 0.838 31 H 0.102 0.898 32 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -6.690 -14.136 -2.474 15.834 hybrid contribution -0.117 1.027 -0.690 1.242 sum -6.807 -13.109 -3.165 15.107 Atomic orbital electron populations 1.22143 0.83574 1.01873 1.01085 1.43600 1.03932 1.05626 1.65921 1.19069 1.12361 0.86494 1.26490 0.87818 1.25423 0.97461 0.94841 0.97022 1.69712 1.43863 0.98679 1.38135 0.86919 0.80336 0.78845 0.82656 1.20021 1.21433 1.18990 1.19991 0.87852 0.84471 0.81522 1.90559 1.14039 1.86829 1.52746 1.21965 1.00723 0.95200 0.97840 0.88910 1.22206 1.02520 0.99204 0.94415 1.22129 0.97129 0.88423 0.99801 1.60716 1.21718 1.45925 1.02247 1.22664 1.01524 0.94880 0.90488 1.22215 1.00926 0.95134 0.77925 0.89285 1.92805 1.97198 1.94618 1.34057 0.92984 0.91071 0.92839 0.91536 0.90241 0.90801 0.90436 0.89952 0.83790 0.89791 0.89439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.12 8.32 59.85 0.50 1.62 16 2 N -0.47 -11.60 2.54 -122.19 -0.31 -11.91 16 3 C -0.32 -9.20 9.36 -14.93 -0.14 -9.34 16 4 H 0.10 3.41 7.93 -52.49 -0.42 2.99 16 5 C 0.06 1.62 5.33 -17.47 -0.09 1.53 16 6 N -0.87 -25.43 13.96 55.50 0.77 -24.65 16 7 Si 0.88 20.43 25.12 -169.99 -4.27 16.16 16 8 H -0.27 -5.79 6.43 56.52 0.36 -5.43 16 9 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 10 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 11 C 0.47 11.22 6.51 -10.99 -0.07 11.15 16 12 O -0.56 -15.52 15.98 5.54 0.09 -15.43 16 13 C -0.13 -2.32 1.54 -91.64 -0.14 -2.46 16 14 H 0.09 1.46 6.68 -51.93 -0.35 1.11 16 15 C -0.14 -2.05 5.21 -26.64 -0.14 -2.19 16 16 C 0.05 0.59 6.55 -3.83 -0.03 0.56 16 17 N -0.68 -7.31 6.87 -113.82 -0.78 -8.09 16 18 C 0.04 0.41 6.29 -3.84 -0.02 0.39 16 19 C 0.08 1.22 3.02 -26.65 -0.08 1.14 16 20 H 0.09 1.50 7.78 -51.93 -0.40 1.09 16 21 F -0.21 -3.89 16.86 2.25 0.04 -3.85 16 22 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 23 H 0.07 1.48 3.44 -51.93 -0.18 1.30 16 24 H 0.05 0.87 5.76 -51.93 -0.30 0.57 16 25 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 26 H 0.08 1.17 7.28 -51.93 -0.38 0.79 16 27 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 28 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.34 3.40 8.86 -39.29 -0.35 3.05 16 31 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 32 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 259.01 15.07 3.90 3.90 Total: -1.00 -32.98 259.01 -4.86 -37.83 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: -4.08 Total: 3.63 kcal Atomic # 6 Polarization: 2.63 SS G_CDS: -0.22 Total: 2.41 kcal Atomic # 7 Polarization: -44.33 SS G_CDS: -0.32 Total: -44.65 kcal Atomic # 8 Polarization: -15.52 SS G_CDS: 0.09 Total: -15.43 kcal Atomic # 9 Polarization: -3.89 SS G_CDS: 0.04 Total: -3.85 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -4.27 Total: 16.16 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -32.98 -4.86 -37.83 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160584641.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.165 kcal (2) G-P(sol) polarization free energy of solvation -32.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds