Wall clock time and date at job start Sun Mar 29 2020 21:47:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.37099 * 119.99592 * 2 1 4 4 H 1.07991 * 120.00437 * 139.45888 * 3 2 1 5 5 C 1.38958 * 119.99730 * 319.46053 * 3 2 1 6 6 N 1.31407 * 120.00120 * 162.31757 * 5 3 2 7 7 Si 1.86804 * 119.99923 * 342.30976 * 5 3 2 8 8 H 1.48501 * 109.47088 * 88.58417 * 7 5 3 9 9 H 1.48502 * 109.46891 * 208.57901 * 7 5 3 10 10 H 1.48500 * 109.47105 * 328.58220 * 7 5 3 11 11 C 1.34766 * 120.00310 * 179.97438 * 2 1 3 12 12 O 1.21299 * 120.00074 * 184.47366 * 11 2 1 13 13 C 1.50696 * 120.00169 * 4.19797 * 11 2 1 14 14 H 1.08999 * 109.52484 * 327.84864 * 13 11 2 15 15 C 1.53127 * 109.52176 * 87.97361 * 13 11 2 16 16 C 1.53041 * 109.27614 * 177.56247 * 15 13 11 17 17 N 1.46847 * 109.52144 * 300.81689 * 16 15 13 18 18 C 1.46845 * 111.19950 * 61.74690 * 17 16 15 19 19 C 1.53035 * 109.52451 * 298.25714 * 18 17 16 20 20 H 1.09003 * 109.50142 * 299.23658 * 19 18 17 21 21 F 1.39895 * 109.50933 * 179.12112 * 19 18 17 22 22 H 1.08992 * 109.47136 * 264.37510 * 1 2 3 23 23 H 1.08999 * 109.47157 * 24.38207 * 1 2 3 24 24 H 1.09005 * 109.46496 * 144.37781 * 1 2 3 25 25 H 0.96999 * 120.00585 * 179.97438 * 6 5 3 26 26 H 1.08996 * 109.49780 * 297.49651 * 15 13 11 27 27 H 1.08996 * 109.50396 * 57.58194 * 15 13 11 28 28 H 1.08995 * 109.46335 * 60.83203 * 16 15 13 29 29 H 1.08996 * 109.46044 * 180.81896 * 16 15 13 30 30 H 1.00901 * 111.00612 * 297.64630 * 17 16 15 31 31 H 1.09004 * 109.46334 * 58.26948 * 18 17 16 32 32 H 1.08997 * 109.46503 * 178.24916 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1505 1.1874 0.0000 4 1 3.0360 1.2998 0.6079 5 6 1.7057 2.2463 -0.7822 6 7 2.1271 3.4666 -0.5370 7 14 0.5090 1.9350 -2.1824 8 1 -0.8828 2.0138 -1.6707 9 1 0.7066 2.9593 -3.2393 10 1 0.7520 0.5845 -2.7502 11 6 2.1390 -1.1671 0.0005 12 8 3.3492 -1.1686 0.0825 13 6 1.3886 -2.4705 -0.0944 14 1 0.4203 -2.3700 0.3958 15 6 1.1811 -2.8354 -1.5670 16 6 0.4728 -4.1890 -1.6572 17 7 1.2861 -5.2138 -0.9903 18 6 1.4592 -4.9094 0.4357 19 6 2.1969 -3.5773 0.5885 20 1 3.1798 -3.6502 0.1229 21 9 2.3439 -3.2778 1.9471 22 1 -0.3633 -0.1007 1.0226 23 1 -0.3633 0.9360 -0.4242 24 1 -0.3632 -0.8354 -0.5986 25 1 1.8170 4.2058 -1.0833 26 1 0.5698 -2.0720 -2.0483 27 1 2.1480 -2.8959 -2.0667 28 1 -0.4998 -4.1231 -1.1695 29 1 0.3366 -4.4585 -2.7045 30 1 2.1789 -5.3214 -1.4481 31 1 0.4819 -4.8401 0.9136 32 1 2.0393 -5.7019 0.9085 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001160584641.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:37 Heat of formation + Delta-G solvation = -101.521169 kcal Electronic energy + Delta-G solvation = -17094.951855 eV Core-core repulsion = 14196.949571 eV Total energy + Delta-G solvation = -2898.002284 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.117 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -48.70565 -41.03560 -38.84795 -36.82807 -34.29812 -32.90610 -31.30189 -28.31755 -27.35520 -25.05256 -23.83718 -22.05259 -20.65728 -19.15469 -18.21998 -17.60216 -17.27660 -16.76812 -16.61395 -16.33325 -15.54194 -15.51151 -14.92848 -14.68883 -14.28839 -14.18152 -14.00148 -13.52296 -13.26534 -13.17208 -12.85416 -12.75572 -12.28579 -12.13714 -11.87193 -11.84356 -11.48425 -11.09929 -10.53405 -9.75965 -9.49307 -8.55692 -6.26946 1.16064 1.28491 1.42453 1.80932 2.14124 2.56446 2.84346 3.18532 3.38096 3.51738 3.63831 3.77655 4.02536 4.14673 4.23706 4.37207 4.39345 4.50358 4.56968 4.67474 4.71140 4.78269 4.97286 5.00978 5.20736 5.47593 5.90024 5.95917 6.34323 6.47739 6.84901 7.19292 7.75491 8.61665 Molecular weight = 230.12amu Principal moments of inertia in cm(-1) A = 0.037041 B = 0.009283 C = 0.008093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.737104 B = 3015.403604 C = 3459.045611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 N -0.482 5.482 3 C -0.343 4.343 4 H 0.034 0.966 5 C 0.007 3.993 6 N -0.916 5.916 7 Si 0.961 3.039 8 H -0.230 1.230 9 H -0.288 1.288 10 H -0.252 1.252 11 C 0.462 3.538 12 O -0.618 6.618 13 C -0.125 4.125 14 H 0.117 0.883 15 C -0.140 4.140 16 C 0.064 3.936 17 N -0.671 5.671 18 C 0.050 3.950 19 C 0.070 3.930 20 H 0.070 0.930 21 F -0.227 7.227 22 H 0.070 0.930 23 H 0.065 0.935 24 H 0.099 0.901 25 H 0.282 0.718 26 H 0.082 0.918 27 H 0.058 0.942 28 H 0.095 0.905 29 H 0.107 0.893 30 H 0.350 0.650 31 H 0.098 0.902 32 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.295 -16.386 -4.386 19.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 N -0.203 5.203 3 C -0.471 4.471 4 H 0.052 0.948 5 C -0.195 4.195 6 N -0.553 5.553 7 Si 0.783 3.217 8 H -0.155 1.155 9 H -0.215 1.215 10 H -0.176 1.176 11 C 0.252 3.748 12 O -0.503 6.503 13 C -0.146 4.146 14 H 0.135 0.865 15 C -0.180 4.180 16 C -0.066 4.066 17 N -0.299 5.299 18 C -0.080 4.080 19 C 0.031 3.969 20 H 0.088 0.912 21 F -0.208 7.208 22 H 0.089 0.911 23 H 0.083 0.917 24 H 0.117 0.883 25 H 0.091 0.909 26 H 0.101 0.899 27 H 0.077 0.923 28 H 0.114 0.886 29 H 0.125 0.875 30 H 0.168 0.832 31 H 0.116 0.884 32 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -10.252 -16.596 -4.237 19.962 hybrid contribution 1.119 1.828 -0.047 2.144 sum -9.133 -14.768 -4.285 17.885 Atomic orbital electron populations 1.22400 0.80089 1.03399 1.03322 1.43752 1.06067 1.04461 1.66033 1.18651 1.11832 0.89362 1.27285 0.94752 1.26365 1.00031 0.93702 0.99391 1.69851 1.46012 1.00000 1.39486 0.85717 0.79281 0.79082 0.77597 1.15501 1.21505 1.17591 1.21222 0.87724 0.86428 0.79397 1.90519 1.16966 1.88007 1.54769 1.22005 1.00626 0.91305 1.00711 0.86504 1.22288 1.02458 1.01709 0.91535 1.22203 0.97059 0.85745 1.01576 1.60773 1.22160 1.45320 1.01659 1.22620 1.01694 0.92239 0.91492 1.22529 1.00750 0.97214 0.76432 0.91154 1.92762 1.97320 1.94972 1.35742 0.91114 0.91701 0.88306 0.90880 0.89919 0.92312 0.88646 0.87514 0.83170 0.88367 0.87967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.81 8.32 127.77 1.06 2.88 16 2 N -0.48 -23.96 2.54 -658.89 -1.67 -25.63 16 3 C -0.34 -20.97 9.36 84.04 0.79 -20.19 16 4 H 0.03 2.50 7.93 -2.91 -0.02 2.47 16 5 C 0.01 0.39 5.33 84.93 0.45 0.84 16 6 N -0.92 -55.73 13.96 21.67 0.30 -55.43 16 7 Si 0.96 41.06 25.12 68.60 1.72 42.78 16 8 H -0.23 -8.32 6.43 99.48 0.64 -7.68 16 9 H -0.29 -12.29 7.11 99.48 0.71 -11.58 16 10 H -0.25 -10.17 7.11 99.48 0.71 -9.47 16 11 C 0.46 22.21 6.51 87.66 0.57 22.78 16 12 O -0.62 -36.18 15.98 -3.09 -0.05 -36.22 16 13 C -0.12 -4.03 1.54 -11.46 -0.02 -4.05 16 14 H 0.12 3.21 6.68 -2.39 -0.02 3.20 16 15 C -0.14 -3.51 5.21 30.65 0.16 -3.35 16 16 C 0.06 1.04 6.55 86.33 0.57 1.61 16 17 N -0.67 -11.61 6.87 -514.02 -3.53 -15.14 16 18 C 0.05 1.01 6.29 86.33 0.54 1.56 16 19 C 0.07 2.14 3.02 30.65 0.09 2.23 16 20 H 0.07 2.39 7.78 -2.39 -0.02 2.37 16 21 F -0.23 -8.55 16.86 44.97 0.76 -7.79 16 22 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 23 H 0.06 2.46 3.44 -2.39 -0.01 2.45 16 24 H 0.10 2.70 5.76 -2.38 -0.01 2.69 16 25 H 0.28 15.56 8.31 -92.71 -0.77 14.79 16 26 H 0.08 2.04 7.28 -2.39 -0.02 2.03 16 27 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 28 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.35 5.69 8.86 -89.69 -0.79 4.90 16 31 H 0.10 1.77 8.14 -2.38 -0.02 1.75 16 32 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -78.91 259.01 2.02 -76.89 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: 0.28 Total: 16.25 kcal Atomic # 6 Polarization: 0.08 SS G_CDS: 4.22 Total: 4.30 kcal Atomic # 7 Polarization: -91.30 SS G_CDS: -4.90 Total: -96.20 kcal Atomic # 8 Polarization: -36.18 SS G_CDS: -0.05 Total: -36.22 kcal Atomic # 9 Polarization: -8.55 SS G_CDS: 0.76 Total: -7.79 kcal Atomic # 14 Polarization: 41.06 SS G_CDS: 1.72 Total: 42.78 kcal Total: -78.91 2.02 -76.89 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160584641.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.634 kcal (2) G-P(sol) polarization free energy of solvation -78.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds