Wall clock time and date at job start Sun Mar 29 2020 21:39:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 C 1.53004 * 109.46873 * 230.28007 * 3 2 1 5 5 C 1.53001 * 109.47048 * 180.02562 * 4 3 2 6 6 N 1.46500 * 109.47148 * 180.02562 * 5 4 3 7 7 C 1.38091 * 119.99929 * 180.02562 * 6 5 4 8 8 N 1.32273 * 119.90269 * 359.97438 * 7 6 5 9 9 C 1.31970 * 121.85991 * 180.02562 * 8 7 6 10 10 C 1.38681 * 121.44918 * 0.02562 * 9 8 7 11 11 C 1.38003 * 119.62986 * 0.02562 * 10 9 8 12 12 C 1.41002 * 118.28151 * 359.97438 * 11 10 9 13 13 C 1.41010 * 120.70993 * 179.97438 * 12 11 10 14 14 H 1.08001 * 120.00348 * 154.87527 * 13 12 11 15 15 C 1.39950 * 119.99870 * 334.87918 * 13 12 11 16 16 N 1.30869 * 119.99765 * 343.99189 * 15 13 12 17 17 Si 1.86798 * 120.00302 * 163.99505 * 15 13 12 18 18 H 1.48499 * 109.46995 * 59.99408 * 17 15 13 19 19 H 1.48494 * 109.47117 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.46815 * 299.99837 * 17 15 13 21 21 H 4.44648 * 5.63400 * 179.97438 * 4 1 2 22 22 H 1.08994 * 109.47243 * 110.27773 * 3 2 1 23 23 H 1.09002 * 109.47316 * 350.28038 * 3 2 1 24 24 H 1.09000 * 109.47220 * 60.00536 * 4 3 2 25 25 H 1.08995 * 109.47190 * 299.99730 * 4 3 2 26 26 H 1.08994 * 109.47238 * 59.99662 * 5 4 3 27 27 H 1.09002 * 109.47145 * 300.00034 * 5 4 3 28 28 H 0.96993 * 120.00121 * 359.97438 * 6 5 4 29 29 H 1.08004 * 119.27622 * 180.27808 * 9 8 7 30 30 H 1.08003 * 120.18755 * 180.02562 * 10 9 8 31 31 H 1.08001 * 120.86108 * 180.02562 * 11 10 9 32 32 H 0.97006 * 119.99883 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1555 0.9227 1.1096 5 6 4.6855 0.9239 1.1092 6 7 5.1734 1.8063 2.1720 7 6 6.5310 1.9689 2.3655 8 7 7.3892 1.3267 1.5905 9 6 8.6941 1.4533 1.7415 10 6 9.2328 2.2692 2.7250 11 6 8.3925 2.9670 3.5685 12 6 7.0008 2.8218 3.3952 13 6 6.0955 3.5104 4.2287 14 1 5.0992 3.7330 3.8763 15 6 6.4882 3.9055 5.5125 16 7 7.5544 3.3810 6.0610 17 14 5.4906 5.1813 6.4433 18 1 4.1032 4.6856 6.6291 19 1 6.1113 5.4232 7.7704 20 1 5.4639 6.4490 5.6703 21 1 -1.0502 0.0000 -0.0003 22 1 3.0092 0.3570 -0.9639 23 1 3.0098 -1.0121 0.1735 24 1 2.7924 0.5663 2.0735 25 1 2.7918 1.9354 0.9361 26 1 5.0484 1.2805 0.1453 27 1 5.0497 -0.0887 1.2825 28 1 4.5429 2.2769 2.7393 29 1 9.3570 0.9127 1.0821 30 1 10.3040 2.3581 2.8302 31 1 8.7906 3.6083 4.3409 32 1 7.8264 3.6546 6.9511 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162439197.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:43 Heat of formation + Delta-G solvation = 54.804462 kcal Electronic energy + Delta-G solvation = -14850.834238 eV Core-core repulsion = 12390.379967 eV Total energy + Delta-G solvation = -2460.454271 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.31214 -37.48356 -35.81725 -35.29709 -32.56609 -32.27624 -30.25260 -27.47061 -26.60792 -23.68847 -22.60600 -22.17212 -19.13375 -18.95039 -18.17557 -17.12706 -16.58113 -16.52436 -15.65904 -15.33113 -14.82123 -14.68872 -14.35157 -13.96789 -13.76296 -13.36845 -13.23180 -13.11216 -12.66223 -12.35228 -12.19031 -12.14611 -11.62628 -11.12805 -11.12083 -10.96636 -10.65223 -9.98712 -9.80167 -8.63620 -8.29954 -6.14846 0.94503 1.23205 1.41016 1.51061 1.56002 1.88353 1.95120 2.22834 2.80364 2.87548 3.53491 3.83121 4.11148 4.19006 4.27323 4.46500 4.65146 4.70705 4.76463 4.83711 4.94332 5.03407 5.20845 5.22701 5.25616 5.29416 5.34956 5.80832 5.92969 6.11598 6.42002 6.73640 6.77395 6.85960 6.91932 7.16266 7.93805 8.39386 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.020377 B = 0.006939 C = 0.005266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.776141 B = 4034.135897 C = 5316.213585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.217 4.217 3 C -0.006 4.006 4 C -0.112 4.112 5 C 0.149 3.851 6 N -0.729 5.729 7 C 0.294 3.706 8 N -0.543 5.543 9 C -0.001 4.001 10 C -0.199 4.199 11 C -0.151 4.151 12 C -0.001 4.001 13 C -0.482 4.482 14 H 0.081 0.919 15 C 0.034 3.966 16 N -0.832 5.832 17 Si 0.981 3.019 18 H -0.258 1.258 19 H -0.273 1.273 20 H -0.263 1.263 21 H 0.245 0.755 22 H 0.099 0.901 23 H 0.097 0.903 24 H 0.066 0.934 25 H 0.069 0.931 26 H 0.048 0.952 27 H 0.044 0.956 28 H 0.404 0.596 29 H 0.150 0.850 30 H 0.120 0.880 31 H 0.110 0.890 32 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.782 -2.323 -5.729 10.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.217 4.217 3 C -0.043 4.043 4 C -0.150 4.150 5 C 0.024 3.976 6 N -0.368 5.368 7 C 0.055 3.945 8 N -0.262 5.262 9 C -0.154 4.154 10 C -0.222 4.222 11 C -0.177 4.177 12 C -0.008 4.008 13 C -0.513 4.513 14 H 0.099 0.901 15 C -0.180 4.180 16 N -0.459 5.459 17 Si 0.802 3.198 18 H -0.182 1.182 19 H -0.197 1.197 20 H -0.187 1.187 21 H 0.262 0.738 22 H 0.117 0.883 23 H 0.115 0.885 24 H 0.085 0.915 25 H 0.088 0.912 26 H 0.066 0.934 27 H 0.062 0.938 28 H 0.241 0.759 29 H 0.168 0.832 30 H 0.138 0.862 31 H 0.128 0.872 32 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -8.908 -3.009 -6.323 11.331 hybrid contribution 0.005 1.182 1.511 1.919 sum -8.903 -1.827 -4.812 10.284 Atomic orbital electron populations 1.25707 0.96885 1.00130 0.99972 1.23584 0.95369 1.01343 1.01404 1.18601 0.84424 1.01333 0.99927 1.21592 0.93460 1.00587 0.99389 1.20981 0.92997 0.93347 0.90244 1.43844 1.01895 1.52625 1.38427 1.18772 0.85984 0.94757 0.94975 1.66679 1.04240 1.26505 1.28775 1.21950 0.90102 1.02934 1.00399 1.21662 0.99703 1.01886 0.98928 1.21391 0.93085 1.02409 1.00831 1.18297 0.94070 0.94455 0.93991 1.19382 0.99958 1.33441 0.98488 0.90052 1.26669 0.96201 0.96943 0.98188 1.69878 1.24195 1.36260 1.15542 0.85264 0.78963 0.78473 0.77091 1.18233 1.19747 1.18715 0.73839 0.88299 0.88484 0.91486 0.91196 0.93372 0.93785 0.75943 0.83231 0.86229 0.87223 0.90387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -4.13 19.25 74.32 1.43 -2.70 16 2 C -0.22 -4.99 13.34 31.12 0.42 -4.57 16 3 C -0.01 -0.13 5.70 28.79 0.16 0.04 16 4 C -0.11 -2.90 5.28 30.60 0.16 -2.74 16 5 C 0.15 4.95 5.68 86.38 0.49 5.44 16 6 N -0.73 -30.43 5.61 -343.65 -1.93 -32.35 16 7 C 0.29 14.71 7.52 134.05 1.01 15.72 16 8 N -0.54 -26.51 9.54 -191.45 -1.83 -28.33 16 9 C 0.00 -0.04 11.17 84.78 0.95 0.91 16 10 C -0.20 -9.48 10.08 22.32 0.22 -9.26 16 11 C -0.15 -8.06 8.79 22.89 0.20 -7.85 16 12 C 0.00 -0.06 5.60 -21.06 -0.12 -0.17 16 13 C -0.48 -24.98 8.52 23.36 0.20 -24.78 16 14 H 0.08 3.93 6.69 -2.91 -0.02 3.91 16 15 C 0.03 1.68 5.20 85.25 0.44 2.12 16 16 N -0.83 -43.36 10.93 21.83 0.24 -43.12 16 17 Si 0.98 37.54 29.59 68.60 2.03 39.57 16 18 H -0.26 -9.46 7.11 99.48 0.71 -8.75 16 19 H -0.27 -10.06 7.11 99.48 0.71 -9.36 16 20 H -0.26 -9.88 7.11 99.48 0.71 -9.18 16 21 H 0.25 2.80 7.80 -4.41 -0.03 2.77 16 22 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 23 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 24 H 0.07 1.76 8.14 -2.39 -0.02 1.75 16 25 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 26 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 27 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 28 H 0.40 16.22 6.67 -92.71 -0.62 15.60 16 29 H 0.15 5.76 8.06 -2.91 -0.02 5.74 16 30 H 0.12 4.92 8.06 -2.91 -0.02 4.89 16 31 H 0.11 6.08 6.25 -2.91 -0.02 6.06 16 32 H 0.29 13.59 8.30 -92.70 -0.77 12.82 16 Total: -1.00 -61.75 283.79 4.58 -57.17 By element: Atomic # 1 Polarization: 34.43 SS G_CDS: 0.50 Total: 34.93 kcal Atomic # 6 Polarization: -33.42 SS G_CDS: 5.57 Total: -27.86 kcal Atomic # 7 Polarization: -100.29 SS G_CDS: -3.51 Total: -103.81 kcal Atomic # 14 Polarization: 37.54 SS G_CDS: 2.03 Total: 39.57 kcal Total: -61.75 4.58 -57.17 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162439197.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.973 kcal (2) G-P(sol) polarization free energy of solvation -61.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.168 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds