Wall clock time and date at job start Sun Mar 29 2020 21:29:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31597 * 1 3 3 Si 1.86802 * 119.99735 * 2 1 4 4 H 1.48503 * 109.46802 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47050 * 299.99690 * 3 2 1 6 6 H 1.48499 * 109.47170 * 60.00069 * 3 2 1 7 7 C 1.38792 * 119.99786 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99830 * 180.02562 * 7 2 1 9 9 N 1.36839 * 120.00413 * 359.97438 * 7 2 1 10 10 C 1.39332 * 120.00134 * 180.02562 * 9 7 2 11 11 C 1.39199 * 120.01508 * 0.02562 * 10 9 7 12 12 C 1.38148 * 120.21494 * 179.97438 * 11 10 9 13 13 C 1.38064 * 120.25172 * 359.97438 * 12 11 10 14 14 C 1.39687 * 120.02362 * 0.02562 * 13 12 11 15 15 C 1.47636 * 120.10484 * 179.97438 * 14 13 12 16 16 N 1.28927 * 124.44635 * 179.97438 * 15 14 13 17 17 C 1.46740 * 112.18310 * 179.86793 * 16 15 14 18 18 C 1.54640 * 105.24135 * 16.36492 * 17 16 15 19 19 C 1.51256 * 124.49447 * 359.97438 * 15 14 13 20 20 C 1.38798 * 120.01409 * 180.25424 * 10 9 7 21 21 H 0.97003 * 119.99912 * 0.02562 * 1 2 3 22 22 H 0.97004 * 119.99948 * 0.02562 * 9 7 2 23 23 H 1.07995 * 119.89197 * 0.02562 * 11 10 9 24 24 H 1.08000 * 119.87749 * 179.97438 * 12 11 10 25 25 H 1.07995 * 119.99179 * 180.02562 * 13 12 11 26 26 H 1.09002 * 110.30793 * 257.39464 * 17 16 15 27 27 H 1.09000 * 110.30232 * 135.33047 * 17 16 15 28 28 H 1.09002 * 111.11670 * 93.64775 * 18 17 16 29 29 H 1.08994 * 111.11926 * 217.78975 * 18 17 16 30 30 H 1.08999 * 110.54829 * 45.37461 * 19 15 14 31 31 H 1.09008 * 110.67058 * 282.62843 * 19 15 14 32 32 H 1.08001 * 120.12801 * 0.02562 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3160 0.0000 0.0000 3 14 2.2499 1.6178 0.0000 4 1 3.7099 1.3464 0.0006 5 1 1.8912 2.3964 -1.2125 6 1 1.8911 2.3965 1.2125 7 6 2.0099 -1.2020 0.0005 8 1 3.0900 -1.2020 0.0010 9 7 1.3257 -2.3871 0.0016 10 6 2.0224 -3.5937 0.0027 11 6 3.4144 -3.5941 0.0032 12 6 4.1093 -4.7880 0.0048 13 6 3.4284 -5.9891 0.0064 14 6 2.0316 -6.0007 0.0059 15 6 1.3017 -7.2840 0.0071 16 7 0.0170 -7.3923 0.0072 17 6 -0.4209 -8.7928 0.0053 18 6 0.8241 -9.6087 0.4243 19 6 1.9619 -8.6449 0.0083 20 6 1.3287 -4.7959 -0.0016 21 1 -0.4850 0.8401 -0.0004 22 1 0.3557 -2.3871 0.0016 23 1 3.9528 -2.6579 0.0032 24 1 5.1893 -4.7820 0.0048 25 1 3.9759 -6.9200 0.0081 26 1 -0.7470 -9.0859 -0.9927 27 1 -1.2276 -8.9378 0.7239 28 1 0.8334 -9.7866 1.4996 29 1 0.8829 -10.5468 -0.1276 30 1 2.7739 -8.6756 0.7347 31 1 2.3304 -8.8947 -0.9867 32 1 0.2487 -4.7986 -0.0062 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163187583.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:29:13 Heat of formation + Delta-G solvation = 41.506762 kcal Electronic energy + Delta-G solvation = -14901.180137 eV Core-core repulsion = 12440.149234 eV Total energy + Delta-G solvation = -2461.030903 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.24884 -37.91946 -34.97254 -31.96126 -31.10085 -29.64708 -28.49778 -27.04131 -24.64522 -22.14915 -21.70142 -20.48622 -18.46407 -17.45080 -16.34233 -15.83218 -15.06836 -14.97761 -14.35843 -14.14470 -13.35650 -12.91641 -12.75435 -12.62842 -12.47008 -12.01094 -11.69819 -11.65731 -11.29790 -11.20739 -10.74232 -10.48362 -10.36620 -10.30981 -9.82830 -9.52244 -9.27846 -8.71170 -7.77086 -6.72148 -6.54582 -3.72325 1.61622 2.56413 3.07401 3.17898 3.21695 3.25598 4.05728 4.44943 4.56994 4.73040 4.86088 4.91138 5.24534 5.31223 5.36511 5.68771 5.70566 5.81483 5.86609 5.89816 6.05452 6.10837 6.21960 6.52367 6.62524 6.85278 6.97988 7.24674 7.38065 7.49019 7.54368 7.73061 8.00732 8.06721 8.77263 9.37376 9.56755 10.62322 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.047656 B = 0.005434 C = 0.004906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.403314 B = 5151.354473 C = 5706.039403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.018 3.982 3 Si 0.931 3.069 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.299 4.299 8 H 0.103 0.897 9 N -0.562 5.562 10 C 0.202 3.798 11 C -0.213 4.213 12 C -0.067 4.067 13 C -0.220 4.220 14 C -0.007 4.007 15 C 0.203 3.797 16 N -0.508 5.508 17 C 0.015 3.985 18 C -0.152 4.152 19 C -0.135 4.135 20 C -0.186 4.186 21 H 0.274 0.726 22 H 0.400 0.600 23 H 0.116 0.884 24 H 0.105 0.895 25 H 0.102 0.898 26 H 0.079 0.921 27 H 0.083 0.917 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.046 -12.529 0.085 13.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.185 4.185 3 Si 0.758 3.242 4 H -0.192 1.192 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.429 4.429 8 H 0.120 0.880 9 N -0.165 5.165 10 C 0.081 3.919 11 C -0.238 4.238 12 C -0.086 4.086 13 C -0.245 4.245 14 C -0.009 4.009 15 C 0.015 3.985 16 N -0.216 5.216 17 C -0.115 4.115 18 C -0.191 4.191 19 C -0.175 4.175 20 C -0.212 4.212 21 H 0.084 0.916 22 H 0.235 0.765 23 H 0.134 0.866 24 H 0.123 0.877 25 H 0.121 0.879 26 H 0.098 0.902 27 H 0.101 0.899 28 H 0.092 0.908 29 H 0.096 0.904 30 H 0.105 0.895 31 H 0.106 0.894 32 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 2.895 -11.592 0.084 11.948 hybrid contribution 0.422 0.127 -0.006 0.441 sum 3.317 -11.465 0.078 11.935 Atomic orbital electron populations 1.69704 1.05986 1.28343 1.48943 1.25296 0.95728 0.99872 0.97613 0.85767 0.79393 0.81067 0.77948 1.19195 1.20612 1.20617 1.19778 0.93067 0.82750 1.47271 0.87953 1.41019 1.08096 1.01880 1.65471 1.17772 0.91703 0.86036 0.96391 1.20546 0.92519 0.97759 1.13000 1.20498 0.98038 0.92098 0.97980 1.20341 0.92161 0.97052 1.14944 1.17653 0.92274 0.88661 1.02299 1.23685 0.90948 0.93544 0.90346 1.73386 1.13984 1.19377 1.14865 1.23255 0.98195 0.88352 1.01691 1.23043 0.95358 0.98842 1.01870 1.22276 0.99549 0.92638 1.03029 1.20444 0.98866 0.90239 1.11667 0.91633 0.76537 0.86649 0.87684 0.87949 0.90245 0.89874 0.90809 0.90390 0.89535 0.89439 0.86715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.28 13.05 55.49 0.72 -23.55 16 2 C 0.02 0.46 5.50 -17.45 -0.10 0.37 16 3 Si 0.93 20.00 29.55 -169.99 -5.02 14.98 16 4 H -0.27 -5.56 7.11 56.52 0.40 -5.15 16 5 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 6 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 7 C -0.30 -7.75 9.55 -15.11 -0.14 -7.89 16 8 H 0.10 2.54 5.67 -52.48 -0.30 2.24 16 9 N -0.56 -14.20 5.43 -9.63 -0.05 -14.25 16 10 C 0.20 4.65 6.61 -83.89 -0.55 4.09 16 11 C -0.21 -4.51 9.30 -39.26 -0.37 -4.88 16 12 C -0.07 -1.22 10.02 -39.68 -0.40 -1.62 16 13 C -0.22 -3.87 9.57 -39.10 -0.37 -4.25 16 14 C -0.01 -0.13 5.87 -105.05 -0.62 -0.75 16 15 C 0.20 3.44 7.03 -79.70 -0.56 2.88 16 16 N -0.51 -8.93 10.94 -53.72 -0.59 -9.52 16 17 C 0.01 0.20 7.81 -3.05 -0.02 0.17 16 18 C -0.15 -1.67 7.26 -24.92 -0.18 -1.85 16 19 C -0.14 -1.70 5.99 -26.66 -0.16 -1.86 16 20 C -0.19 -4.02 9.51 -38.91 -0.37 -4.39 16 21 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 22 H 0.40 10.37 7.90 -40.82 -0.32 10.05 16 23 H 0.12 2.45 5.94 -52.49 -0.31 2.13 16 24 H 0.11 1.60 8.06 -52.49 -0.42 1.17 16 25 H 0.10 1.50 7.17 -52.49 -0.38 1.12 16 26 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.09 0.99 7.79 -51.93 -0.40 0.59 16 31 H 0.09 1.00 8.14 -51.92 -0.42 0.57 16 32 H 0.11 2.53 7.77 -52.49 -0.41 2.12 16 LS Contribution 273.64 15.07 4.12 4.12 Total: -1.00 -27.69 273.64 -8.45 -36.14 By element: Atomic # 1 Polarization: 15.84 SS G_CDS: -3.79 Total: 12.05 kcal Atomic # 6 Polarization: -16.12 SS G_CDS: -3.84 Total: -19.97 kcal Atomic # 7 Polarization: -47.40 SS G_CDS: 0.08 Total: -47.32 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.02 Total: 14.98 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -27.69 -8.45 -36.14 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163187583.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.646 kcal (2) G-P(sol) polarization free energy of solvation -27.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.139 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds