Wall clock time and date at job start Sun Mar 29 2020 21:45:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46497 * 109.47501 * 2 1 4 4 C 1.36808 * 125.06182 * 265.02320 * 3 2 1 5 5 C 1.34240 * 109.94702 * 179.97438 * 4 3 2 6 6 C 1.46495 * 107.00101 * 359.97438 * 5 4 3 7 7 C 1.39584 * 133.99464 * 179.97438 * 6 5 4 8 8 C 1.38478 * 119.43561 * 180.02562 * 7 6 5 9 9 N 1.39459 * 119.91417 * 179.97438 * 8 7 6 10 10 C 1.36835 * 120.00014 * 180.02562 * 9 8 7 11 11 H 1.07999 * 120.00140 * 0.02562 * 10 9 8 12 12 C 1.38767 * 119.99710 * 179.97438 * 10 9 8 13 13 N 1.31617 * 119.99683 * 0.27756 * 12 10 9 14 14 Si 1.86800 * 119.99683 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.47035 * 60.00430 * 14 12 10 16 16 H 1.48503 * 109.46845 * 179.97438 * 14 12 10 17 17 H 1.48503 * 109.47237 * 300.00186 * 14 12 10 18 18 C 1.39596 * 120.17815 * 0.27692 * 8 7 6 19 19 C 1.36566 * 120.72848 * 359.45058 * 18 8 7 20 20 C 1.37832 * 125.05821 * 84.99929 * 3 2 1 21 21 H 1.08996 * 109.47083 * 300.00369 * 1 2 3 22 22 H 1.09007 * 109.46573 * 59.99828 * 1 2 3 23 23 H 1.08990 * 109.47439 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47020 * 239.99983 * 2 1 3 25 25 H 1.08999 * 109.46806 * 120.00364 * 2 1 3 26 26 H 1.08000 * 125.02702 * 359.94540 * 4 3 2 27 27 H 1.07999 * 126.50108 * 180.02562 * 5 4 3 28 28 H 1.08000 * 120.28223 * 0.02562 * 7 6 5 29 29 H 0.96999 * 119.99851 * 359.97438 * 9 8 7 30 30 H 0.97001 * 120.00638 * 359.71673 * 13 12 10 31 31 H 1.08002 * 119.63025 * 179.72186 * 18 8 7 32 32 H 1.08002 * 119.91807 * 180.26073 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3720 2.0897 -1.1156 5 6 2.7749 3.3218 -0.7669 6 6 2.6703 3.4100 0.6916 7 6 2.9386 4.4135 1.6240 8 6 2.7263 4.1663 2.9699 9 7 2.9916 5.1616 3.9101 10 6 2.7830 4.9191 5.2405 11 1 2.4134 3.9568 5.5626 12 6 3.0474 5.9093 6.1760 13 7 3.4936 7.0835 5.7831 14 14 2.7620 5.5784 7.9922 15 1 3.6091 4.4389 8.4269 16 1 3.1185 6.7874 8.7775 17 1 1.3321 5.2459 8.2161 18 6 2.2536 2.9214 3.3887 19 6 1.9837 1.9364 2.4821 20 6 2.1897 2.1604 1.1240 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5139 -0.8901 23 1 -0.3634 -1.0275 -0.0005 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 2.3332 1.7133 -2.1271 27 1 3.1115 4.1007 -1.4351 28 1 3.3085 5.3745 1.2985 29 1 3.3246 6.0255 3.6210 30 1 3.6415 7.2554 4.8400 31 1 2.0955 2.7367 4.4410 32 1 1.6144 0.9795 2.8203 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163187599.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:46 Heat of formation + Delta-G solvation = 62.669905 kcal Electronic energy + Delta-G solvation = -15175.070474 eV Core-core repulsion = 12714.957274 eV Total energy + Delta-G solvation = -2460.113200 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.49296 -37.34640 -34.58673 -33.36058 -31.37934 -29.84121 -27.86493 -26.99372 -24.26700 -23.09982 -21.85296 -20.30875 -19.46345 -17.79375 -16.57330 -16.29083 -15.37019 -14.59547 -14.34924 -14.20026 -13.74109 -13.17914 -12.87432 -12.57936 -12.38920 -12.03477 -11.96787 -11.62857 -11.53241 -11.19923 -11.00886 -10.88058 -10.24191 -9.99988 -9.68098 -9.56099 -8.87295 -8.32492 -7.13480 -6.74067 -6.36162 -3.63727 1.97452 2.72795 3.30478 3.34328 3.37314 3.41054 3.50191 4.26903 4.78103 4.78407 5.09618 5.12799 5.18989 5.29823 5.32744 5.49751 5.62128 5.65961 5.85090 6.05747 6.15657 6.32604 6.38385 6.56646 6.74546 6.93155 7.15701 7.41841 7.54989 7.57749 7.66594 7.99575 8.09754 8.17649 8.65512 9.46712 9.49243 10.69411 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.045015 B = 0.005899 C = 0.005305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.866216 B = 4745.379148 C = 5277.164035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.113 3.887 3 N -0.488 5.488 4 C 0.044 3.956 5 C -0.230 4.230 6 C -0.037 4.037 7 C -0.233 4.233 8 C 0.204 3.796 9 N -0.589 5.589 10 C -0.379 4.379 11 H 0.093 0.907 12 C -0.017 4.017 13 N -0.902 5.902 14 Si 1.088 2.912 15 H -0.285 1.285 16 H -0.278 1.278 17 H -0.285 1.285 18 C -0.166 4.166 19 C -0.081 4.081 20 C -0.001 4.001 21 H 0.063 0.937 22 H 0.058 0.942 23 H 0.065 0.935 24 H 0.079 0.921 25 H 0.078 0.922 26 H 0.153 0.847 27 H 0.132 0.868 28 H 0.102 0.898 29 H 0.382 0.618 30 H 0.263 0.737 31 H 0.122 0.878 32 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.714 -11.665 -9.646 15.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.010 4.010 3 N -0.174 5.174 4 C -0.082 4.082 5 C -0.258 4.258 6 C -0.042 4.042 7 C -0.262 4.262 8 C 0.087 3.913 9 N -0.196 5.196 10 C -0.508 4.508 11 H 0.111 0.889 12 C -0.219 4.219 13 N -0.539 5.539 14 Si 0.915 3.085 15 H -0.211 1.211 16 H -0.203 1.203 17 H -0.211 1.211 18 C -0.189 4.189 19 C -0.102 4.102 20 C -0.104 4.104 21 H 0.082 0.918 22 H 0.077 0.923 23 H 0.084 0.916 24 H 0.097 0.903 25 H 0.096 0.904 26 H 0.170 0.830 27 H 0.150 0.850 28 H 0.120 0.880 29 H 0.216 0.784 30 H 0.075 0.925 31 H 0.139 0.861 32 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -3.744 -11.255 -7.752 14.170 hybrid contribution 0.011 -0.362 -1.789 1.826 sum -3.733 -11.617 -9.541 15.489 Atomic orbital electron populations 1.22193 0.95527 1.01992 1.03104 1.21500 0.94706 0.81742 1.03008 1.43644 1.57752 1.11139 1.04861 1.21472 1.03359 0.92820 0.90593 1.21476 1.13383 0.97337 0.93592 1.18692 1.00350 0.92767 0.92346 1.19389 1.17154 0.99274 0.90337 1.17542 0.96032 0.89284 0.88442 1.40868 1.62016 1.11969 1.04759 1.20453 1.45019 1.02801 0.82557 0.88884 1.26410 0.96330 0.92534 1.06648 1.70924 1.42589 1.22206 1.18181 0.83163 0.76578 0.76036 0.72771 1.21114 1.20323 1.21109 1.20151 1.07095 0.92755 0.98935 1.19343 1.02987 0.98494 0.89356 1.17819 1.12522 0.92244 0.87863 0.91819 0.92292 0.91593 0.90287 0.90359 0.82990 0.84977 0.87998 0.78402 0.92532 0.86050 0.88085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.75 10.24 37.16 0.38 -1.37 16 2 C 0.11 1.29 6.72 -4.04 -0.03 1.26 16 3 N -0.49 -7.68 2.78 -114.37 -0.32 -8.00 16 4 C 0.04 0.65 11.27 -16.74 -0.19 0.46 16 5 C -0.23 -3.99 11.08 -37.67 -0.42 -4.40 16 6 C -0.04 -0.77 6.37 -105.14 -0.67 -1.44 16 7 C -0.23 -5.23 9.95 -38.99 -0.39 -5.62 16 8 C 0.20 4.88 6.62 -83.79 -0.55 4.33 16 9 N -0.59 -15.17 5.44 -9.59 -0.05 -15.22 16 10 C -0.38 -10.18 9.55 -15.12 -0.14 -10.32 16 11 H 0.09 2.41 5.66 -52.49 -0.30 2.11 16 12 C -0.02 -0.45 5.50 -17.45 -0.10 -0.55 16 13 N -0.90 -25.88 13.70 55.49 0.76 -25.12 16 14 Si 1.09 23.68 29.92 -169.99 -5.09 18.59 16 15 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 16 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 17 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 18 C -0.17 -3.69 9.23 -39.68 -0.37 -4.05 16 19 C -0.08 -1.57 9.92 -39.83 -0.40 -1.97 16 20 C 0.00 -0.02 6.81 -83.89 -0.57 -0.59 16 21 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 22 H 0.06 0.61 8.14 -51.92 -0.42 0.19 16 23 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 24 H 0.08 0.70 8.12 -51.93 -0.42 0.28 16 25 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 26 H 0.15 1.63 8.06 -52.49 -0.42 1.21 16 27 H 0.13 2.00 8.06 -52.49 -0.42 1.58 16 28 H 0.10 2.18 8.06 -52.49 -0.42 1.76 16 29 H 0.38 9.75 6.72 -40.82 -0.27 9.47 16 30 H 0.26 7.44 6.77 -40.82 -0.28 7.16 16 31 H 0.12 2.67 5.92 -52.49 -0.31 2.36 16 32 H 0.10 1.67 8.06 -52.49 -0.42 1.25 16 LS Contribution 274.40 15.07 4.14 4.14 Total: -1.00 -30.58 274.40 -7.76 -38.34 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: -3.76 Total: 11.54 kcal Atomic # 6 Polarization: -20.82 SS G_CDS: -3.44 Total: -24.26 kcal Atomic # 7 Polarization: -48.73 SS G_CDS: 0.39 Total: -48.34 kcal Atomic # 14 Polarization: 23.68 SS G_CDS: -5.09 Total: 18.59 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -30.58 -7.76 -38.34 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163187599.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.005 kcal (2) G-P(sol) polarization free energy of solvation -30.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.335 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds