Wall clock time and date at job start Sun Mar 29 2020 21:37:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34241 * 126.50276 * 2 1 4 4 N 1.36811 * 109.95280 * 179.97438 * 3 2 1 5 5 C 1.46499 * 125.06338 * 179.97438 * 4 3 2 6 6 C 1.37836 * 109.87311 * 0.22697 * 4 3 2 7 7 C 1.39186 * 133.33090 * 180.39352 * 6 4 3 8 8 C 1.36569 * 120.15677 * 179.63469 * 7 6 4 9 9 C 1.39588 * 120.73357 * 359.74807 * 8 7 6 10 10 N 1.39460 * 119.91007 * 180.02562 * 9 8 7 11 11 C 1.36833 * 119.99760 * 0.02562 * 10 9 8 12 12 H 1.08006 * 120.00372 * 0.02562 * 11 10 9 13 13 C 1.38762 * 119.99842 * 179.97438 * 11 10 9 14 14 N 1.31612 * 120.00290 * 0.02562 * 13 11 10 15 15 Si 1.86806 * 119.99846 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47322 * 60.00588 * 15 13 11 17 17 H 1.48508 * 109.46790 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47036 * 299.99908 * 15 13 11 19 19 C 1.38475 * 120.18202 * 0.03037 * 9 8 7 20 20 C 1.39587 * 119.43542 * 359.96927 * 19 9 8 21 21 H 1.09000 * 109.46543 * 90.02529 * 1 2 3 22 22 H 1.08993 * 109.47474 * 210.02541 * 1 2 3 23 23 H 1.09001 * 109.46902 * 330.03224 * 1 2 3 24 24 H 1.08009 * 125.02208 * 359.95336 * 3 2 1 25 25 H 1.09002 * 109.47391 * 90.02155 * 5 4 3 26 26 H 1.09001 * 109.46813 * 330.02212 * 5 4 3 27 27 H 1.09004 * 109.47041 * 210.02339 * 5 4 3 28 28 H 1.07998 * 119.92562 * 359.36698 * 7 6 4 29 29 H 1.08004 * 119.63284 * 179.77675 * 8 7 6 30 30 H 0.96998 * 119.99679 * 180.02562 * 10 9 8 31 31 H 0.96997 * 120.00366 * 179.97438 * 14 13 11 32 32 H 1.07994 * 120.28642 * 179.97438 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3055 1.0791 0.0000 4 7 3.6170 0.6894 0.0006 5 6 4.7653 1.5991 0.0002 6 6 3.6969 -0.6867 -0.0042 7 6 4.7629 -1.5815 0.0012 8 6 4.5293 -2.9271 0.0015 9 6 3.2251 -3.4246 0.0017 10 7 3.0062 -4.8019 0.0026 11 6 4.0692 -5.6635 0.0037 12 1 5.0777 -5.2770 0.0044 13 6 3.8515 -7.0339 0.0051 14 7 2.6226 -7.5051 0.0048 15 14 5.3027 -8.2102 0.0074 16 1 6.1271 -7.9769 1.2202 17 1 4.8055 -9.6096 0.0079 18 1 6.1288 -7.9794 -1.2049 19 6 2.1480 -2.5543 0.0010 20 6 2.3784 -1.1776 0.0007 21 1 -0.3632 -0.0005 -1.0277 22 1 -0.3634 -0.8897 0.5142 23 1 -0.3633 0.8903 0.5133 24 1 1.9633 2.1035 -0.0007 25 1 5.0501 1.8251 1.0278 26 1 4.4974 2.5221 -0.5140 27 1 5.6027 1.1269 -0.5135 28 1 5.7774 -1.2110 0.0008 29 1 5.3628 -3.6138 0.0020 30 1 2.1005 -5.1490 0.0023 31 1 2.4703 -8.4630 0.0053 32 1 1.1382 -2.9374 0.0007 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163187806.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:54 Heat of formation + Delta-G solvation = 44.213364 kcal Electronic energy + Delta-G solvation = -15161.549335 eV Core-core repulsion = 12700.635799 eV Total energy + Delta-G solvation = -2460.913536 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.86184 -38.84025 -35.85464 -34.40057 -33.31475 -30.68422 -29.85479 -28.38914 -26.53913 -24.96960 -23.49263 -21.72356 -20.18227 -19.40436 -17.85627 -17.43305 -16.60870 -16.23611 -16.00973 -15.52576 -14.67309 -14.40464 -14.10582 -13.83202 -13.78596 -13.74334 -13.42114 -13.04952 -12.95188 -12.92014 -12.45813 -12.39470 -12.17215 -12.00458 -11.31427 -11.28681 -10.38163 -9.93577 -8.49191 -8.35991 -7.92608 -5.58539 0.47989 1.10451 1.42507 1.53231 1.53756 2.00198 2.25164 2.34367 3.00166 3.48218 3.55443 4.03410 4.08427 4.19435 4.35424 4.58442 4.64204 4.71656 4.76387 4.82216 5.02447 5.05904 5.09929 5.19221 5.26137 5.37840 5.54512 5.72687 5.84578 5.95249 6.10416 6.20184 6.61882 6.80293 6.92655 7.64938 7.78604 8.83861 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.041142 B = 0.006180 C = 0.005394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.404389 B = 4529.956513 C = 5189.913344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C -0.233 4.233 3 C 0.067 3.933 4 N -0.491 5.491 5 C 0.078 3.922 6 C -0.009 4.009 7 C -0.070 4.070 8 C -0.193 4.193 9 C 0.182 3.818 10 N -0.603 5.603 11 C -0.311 4.311 12 H 0.103 0.897 13 C -0.041 4.041 14 N -0.943 5.943 15 Si 0.997 3.003 16 H -0.267 1.267 17 H -0.284 1.284 18 H -0.267 1.267 19 C -0.241 4.241 20 C -0.060 4.060 21 H 0.059 0.941 22 H 0.043 0.957 23 H 0.082 0.918 24 H 0.204 0.796 25 H 0.073 0.927 26 H 0.105 0.895 27 H 0.078 0.922 28 H 0.136 0.864 29 H 0.119 0.881 30 H 0.387 0.613 31 H 0.270 0.730 32 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.702 17.355 -0.084 17.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.242 4.242 3 C -0.060 4.060 4 N -0.176 5.176 5 C -0.062 4.062 6 C -0.114 4.114 7 C -0.091 4.091 8 C -0.216 4.216 9 C 0.068 3.932 10 N -0.212 5.212 11 C -0.440 4.440 12 H 0.120 0.880 13 C -0.237 4.237 14 N -0.585 5.585 15 Si 0.821 3.179 16 H -0.192 1.192 17 H -0.209 1.209 18 H -0.192 1.192 19 C -0.269 4.269 20 C -0.065 4.065 21 H 0.078 0.922 22 H 0.062 0.938 23 H 0.101 0.899 24 H 0.220 0.780 25 H 0.091 0.909 26 H 0.123 0.877 27 H 0.097 0.903 28 H 0.154 0.846 29 H 0.136 0.864 30 H 0.220 0.780 31 H 0.079 0.921 32 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 3.121 17.159 -0.080 17.441 hybrid contribution -0.024 -1.404 0.010 1.404 sum 3.098 15.755 -0.070 16.057 Atomic orbital electron populations 1.19982 0.88836 1.01995 1.01364 1.20526 0.96149 0.90753 1.16733 1.22016 0.81586 0.99714 1.02659 1.43785 1.06673 1.03290 1.63880 1.22085 0.87046 0.93573 1.03512 1.18054 0.94955 0.84040 1.14341 1.19605 0.97058 0.90847 1.01597 1.20226 0.95102 0.95111 1.11124 1.18011 0.94176 0.84089 0.96965 1.40843 1.08028 1.01179 1.71127 1.19932 0.89027 0.87886 1.47203 0.87960 1.26103 1.00295 0.98989 0.98353 1.69820 1.21413 1.14504 1.52725 0.84906 0.77281 0.76595 0.79133 1.19183 1.20913 1.19184 1.19523 0.96079 0.91599 1.19677 1.19070 0.93419 0.92278 1.01773 0.92236 0.93838 0.89903 0.77972 0.90858 0.87661 0.90309 0.84616 0.86363 0.78024 0.92126 0.88635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.71 10.41 71.24 0.74 -0.97 16 2 C -0.23 -7.61 6.32 -18.62 -0.12 -7.73 16 3 C 0.07 1.74 11.20 83.00 0.93 2.67 16 4 N -0.49 -13.78 3.18 -539.06 -1.72 -15.50 16 5 C 0.08 1.34 11.03 127.77 1.41 2.75 16 6 C -0.01 -0.33 6.81 39.03 0.27 -0.07 16 7 C -0.07 -2.64 9.89 22.11 0.22 -2.43 16 8 C -0.19 -8.60 9.23 22.21 0.20 -8.39 16 9 C 0.18 9.05 6.61 38.31 0.25 9.30 16 10 N -0.60 -33.11 5.44 -184.27 -1.00 -34.11 16 11 C -0.31 -17.26 9.55 84.04 0.80 -16.45 16 12 H 0.10 5.36 5.66 -2.91 -0.02 5.34 16 13 C -0.04 -2.24 5.50 84.85 0.47 -1.77 16 14 N -0.94 -55.05 13.05 21.64 0.28 -54.77 16 15 Si 1.00 43.18 29.55 68.60 2.03 45.21 16 16 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 17 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 18 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 19 C -0.24 -11.28 9.95 22.65 0.23 -11.06 16 20 C -0.06 -2.49 6.35 -20.20 -0.13 -2.62 16 21 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 22 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 23 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 24 H 0.20 3.15 8.06 -2.91 -0.02 3.13 16 25 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 26 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.08 1.30 8.10 -2.38 -0.02 1.28 16 28 H 0.14 4.05 8.06 -2.91 -0.02 4.03 16 29 H 0.12 5.22 5.92 -2.91 -0.02 5.20 16 30 H 0.39 22.12 7.89 -92.71 -0.73 21.39 16 31 H 0.27 14.92 8.31 -92.71 -0.77 14.14 16 32 H 0.10 4.44 8.06 -2.91 -0.02 4.42 16 Total: -1.00 -67.92 276.15 5.26 -62.66 By element: Atomic # 1 Polarization: 32.89 SS G_CDS: 0.40 Total: 33.29 kcal Atomic # 6 Polarization: -42.05 SS G_CDS: 5.27 Total: -36.77 kcal Atomic # 7 Polarization: -101.94 SS G_CDS: -2.43 Total: -104.38 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.21 kcal Total: -67.92 5.26 -62.66 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163187806.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.869 kcal (2) G-P(sol) polarization free energy of solvation -67.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.656 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds